>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 384    ctcgccgccgcccagggcgccgc 406
              |||||||||||||||||||||||
Sbjct: 269213 ctcgccgccgcccagggcgccgc 269191

>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14
          Length = 344321

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 384    ctcgccgccgcccagggcgccgc 406
              |||||||||||||||||||||||
Sbjct: 214875 ctcgccgccgcccagggcgccgc 214853

>ref|NM_194966.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0050E08.12), mRNA
          Length = 300

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 370 tcgtcgcgaatcgcctcgccgccgc 394
           |||||||||| ||||||||||||||
Sbjct: 247 tcgtcgcgaaccgcctcgccgccgc 223

>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0094K23, complete sequence
          Length = 167482

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 518   gcgcgacgccgacgccatggtggataacgctag 550
             |||||||||||||||||||| ||| ||| ||||
Sbjct: 40547 gcgcgacgccgacgccatgggggaaaaccctag 40579

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 382    gcctcgccgccgcccagggcg 402
              |||||||||||||||||||||
Sbjct: 275312 gcctcgccgccgcccagggcg 275292

>gb|AC098696.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050E08,
              complete sequence
          Length = 180499

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 370    tcgtcgcgaatcgcctcgccgccgc 394
              |||||||||| ||||||||||||||
Sbjct: 105842 tcgtcgcgaaccgcctcgccgccgc 105866

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 370     tcgtcgcgaatcgcctcgccgccgc 394
               |||||||||| ||||||||||||||
Sbjct: 3824046 tcgtcgcgaaccgcctcgccgccgc 3824070

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 518      gcgcgacgccgacgccatggtggataacgctag 550
                |||||||||||||||||||| ||| ||| ||||
Sbjct: 19445140 gcgcgacgccgacgccatgggggaaaaccctag 19445172

>dbj|AK106007.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A08, full
           insert sequence
          Length = 1437

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 518 gcgcgacgccgacgccatggtggataacgctag 550
           |||||||||||||||||||| ||| ||| ||||
Sbjct: 60  gcgcgacgccgacgccatgggggaaaaccctag 28

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 370     tcgtcgcgaatcgcctcgccgccgc 394
               |||||||||| ||||||||||||||
Sbjct: 3823967 tcgtcgcgaaccgcctcgccgccgc 3823991

>gb|AC007772.6| Drosophila melanogaster clone BACR19P12, complete sequence
          Length = 186607

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   cggccaggaggaggctcccc 446
             ||||||||||||||||||||
Sbjct: 48205 cggccaggaggaggctcccc 48186

>ref|XM_483607.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 792

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 355 gcgcggaggcgggcttcgtc 374
           ||||||||||||||||||||
Sbjct: 752 gcgcggaggcgggcttcgtc 733

>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete
             sequence
          Length = 141691

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   gatcgcgcgcgacgccgacg 531
             ||||||||||||||||||||
Sbjct: 62092 gatcgcgcgcgacgccgacg 62111



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   gatcgcgcgcgacgccgacg 531
             ||||||||||||||||||||
Sbjct: 23604 gatcgcgcgcgacgccgacg 23623

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 512      gatcgcgcgcgacgccgacg 531
                ||||||||||||||||||||
Sbjct: 24686545 gatcgcgcgcgacgccgacg 24686564



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 512      gatcgcgcgcgacgccgacg 531
                ||||||||||||||||||||
Sbjct: 24647418 gatcgcgcgcgacgccgacg 24647437



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 191      ggagatggggcggccgccgt 210
                ||||||||||||||||||||
Sbjct: 10337253 ggagatggggcggccgccgt 10337234

>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 91      ggctatgcgcggcgcatcgt 110
               ||||||||||||||||||||
Sbjct: 3097422 ggctatgcgcggcgcatcgt 3097403

>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone
             OSJNBb0036D03, from chromosome 3, complete sequence
          Length = 125800

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   ggagatggggcggccgccgt 210
             ||||||||||||||||||||
Sbjct: 50719 ggagatggggcggccgccgt 50700

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 92      gctatgcgcggcgcatcgtc 111
               ||||||||||||||||||||
Sbjct: 3645188 gctatgcgcggcgcatcgtc 3645169

>gb|AE005880.1| Caulobacter crescentus CB15 section 206 of 359 of the complete genome
          Length = 10163

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 512  gatcgcgcgcgacgccgacgccat 535
            ||||||||||||||||| ||||||
Sbjct: 8343 gatcgcgcgcgacgccggcgccat 8320

>gb|AE011981.1| Xanthomonas axonopodis pv. citri str. 306,  section 359 of 469 of
           the complete genome
          Length = 10288

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 92  gctatgcgcggcgcatcgtc 111
           ||||||||||||||||||||
Sbjct: 448 gctatgcgcggcgcatcgtc 429

>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 136470

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 512    gatcgcgcgcgacgccgacg 531
              ||||||||||||||||||||
Sbjct: 117856 gatcgcgcgcgacgccgacg 117875



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   gatcgcgcgcgacgccgacg 531
             ||||||||||||||||||||
Sbjct: 79464 gatcgcgcgcgacgccgacg 79483

>gb|AC099021.1| Drosophila melanogaster, chromosome 2R, region 53E-54X, BAC clone
             BACR03E17, complete sequence
          Length = 160338

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 515   cgcgcgcgacgccgacgcca 534
             ||||||||||||||||||||
Sbjct: 37530 cgcgcgcgacgccgacgcca 37511

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 512    gatcgcgcgcgacgccgacgccatggtg 539
              ||||| |||||||| |||||||||||||
Sbjct: 568464 gatcgtgcgcgacgtcgacgccatggtg 568491

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 355      gcgcggaggcgggcttcgtc 374
                ||||||||||||||||||||
Sbjct: 27215966 gcgcggaggcgggcttcgtc 27215985

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 512      gatcgcgcgcgacgccgacg 531
                ||||||||||||||||||||
Sbjct: 24603375 gatcgcgcgcgacgccgacg 24603394



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 512      gatcgcgcgcgacgccgacg 531
                ||||||||||||||||||||
Sbjct: 24564887 gatcgcgcgcgacgccgacg 24564906



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 191      ggagatggggcggccgccgt 210
                ||||||||||||||||||||
Sbjct: 10335354 ggagatggggcggccgccgt 10335335

>gb|AC007771.7|AC007771 Drosophila melanogaster, chromosome 3R, region 92E-92F, BAC clone
              BACR26M03, complete sequence
          Length = 197071

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    cggccaggaggaggctcccc 446
              ||||||||||||||||||||
Sbjct: 173955 cggccaggaggaggctcccc 173936

>ref|XM_343554.2| PREDICTED: Rattus norvegicus cyclin M4 (predicted)
           (Cnnm4_predicted), mRNA
          Length = 1502

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 422 cagcgcggccaggaggaggc 441
           ||||||||||||||||||||
Sbjct: 177 cagcgcggccaggaggaggc 158

>gb|AF220951.1|AF220951 Streptomyces antibioticus 8,8a-deoxyoleandolide synthase 1 (oleAI) and
             8,8a-deoxyoleandolide synthase 2 (oleAII) genes, complete
             cds
          Length = 24568

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 216   ccgatgaaccaaccgccgcgcatc 239
             ||||||| ||||||||||||||||
Sbjct: 18667 ccgatgacccaaccgccgcgcatc 18644



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 216   ccgatgaaccaaccgccgcgcatc 239
             ||||||| ||||||||||||||||
Sbjct: 13978 ccgatgacccaaccgccgcgcatc 13955



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 216  ccgatgaaccaaccgccgcgcatc 239
            ||||||| ||||||||||||||||
Sbjct: 9028 ccgatgacccaaccgccgcgcatc 9005



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 216  ccgatgaaccaaccgccgcgcatc 239
            ||||||| ||||||||||||||||
Sbjct: 4543 ccgatgacccaaccgccgcgcatc 4520

>dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1521_G02
          Length = 117964

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 355    gcgcggaggcgggcttcgtc 374
              ||||||||||||||||||||
Sbjct: 116999 gcgcggaggcgggcttcgtc 117018

>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0623F08
          Length = 154540

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   gcgcggaggcgggcttcgtc 374
             ||||||||||||||||||||
Sbjct: 39169 gcgcggaggcgggcttcgtc 39188

>gb|AE003732.3| Drosophila melanogaster chromosome 3R, section 70 of 118 of the
             complete sequence
          Length = 224529

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 427   cggccaggaggaggctcccc 446
             ||||||||||||||||||||
Sbjct: 10229 cggccaggaggaggctcccc 10210

>gb|AE003805.3| Drosophila melanogaster chromosome 2R, section 45 of 73 of the complete
             sequence
          Length = 272948

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 515   cgcgcgcgacgccgacgcca 534
             ||||||||||||||||||||
Sbjct: 51378 cgcgcgcgacgccgacgcca 51359

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 92      gctatgcgcggcgcatcgtc 111
               ||||||||||||||||||||
Sbjct: 3642614 gctatgcgcggcgcatcgtc 3642595

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   tcgcgcgcgacgccgacgcc 533
             ||||||||||||||||||||
Sbjct: 89631 tcgcgcgcgacgccgacgcc 89650

>gb|AC004341.1|AC004341 Drosophila melanogaster DNA sequence (P1 DS02473 (D239)), complete
             sequence
          Length = 61964

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 515   cgcgcgcgacgccgacgcca 534
             ||||||||||||||||||||
Sbjct: 42273 cgcgcgcgacgccgacgcca 42254

>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     gaatcgcctcgccgccgccc 396
               ||||||||||||||||||||
Sbjct: 3515755 gaatcgcctcgccgccgccc 3515774

>gb|L09654.1|STMPKS3ORF Streptomyces antibioticus polyketide synthase gene, complete cds of
            ORF3 subunit including module 5 and module 6
          Length = 11480

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 216  ccgatgaaccaaccgccgcgcatc 239
            ||||||| ||||||||||||||||
Sbjct: 6648 ccgatgacccaaccgccgcgcatc 6625



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 216  ccgatgaaccaaccgccgcgcatc 239
            ||||||| ||||||||||||||||
Sbjct: 1701 ccgatgacccaaccgccgcgcatc 1678

>dbj|D88362.1| Arthrobacter globiformis genes for glucodextranase and
            endodextranase, complete cds
          Length = 8516

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 381  cgcctcgccgccgcccaggg 400
            ||||||||||||||||||||
Sbjct: 6412 cgcctcgccgccgcccaggg 6393


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,721,016
Number of Sequences: 3902068
Number of extensions: 2721016
Number of successful extensions: 64407
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62829
Number of HSP's gapped (non-prelim): 1578
length of query: 554
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 531
effective length of database: 17,143,297,704
effective search space: 9103091080824
effective search space used: 9103091080824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)