ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart10d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 72 2e-12
214KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 60 6e-09
3PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 48 3e-05
4PDLI7_RAT (Q9Z1Z9) PDZ and LIM domain protein 7 (LIM mineralizat... 34 0.38
5HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly... 34 0.38
6PDLI7_MOUSE (Q3TJD7) PDZ and LIM domain protein 7 (LIM mineraliz... 33 0.65
7YG49_SCHPO (O60184) Protein C23E6.09 in chromosome II 31 3.2
8HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated... 30 7.2
9AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein 30 7.2
10UPPP_STAES (Q8CTJ6) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Un... 29 9.4
11UPPP_STAEQ (Q5HR54) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Un... 29 9.4

>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 36/83 (43%), Positives = 47/83 (56%)
 Frame = +1

Query: 211 CSINTLKLGVCANVLNLLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXXMRANILGIKLN 390
           C I+ LKL VCA VL L+K  +G+P  EQ                    ++AN+LGI LN
Sbjct: 48  CPIDALKLKVCAKVLGLVK--VGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLN 105

Query: 391 VPIDLTLLLNQCGKKCPANFTCP 459
           VP+ L  +LN CG+ CP +FTCP
Sbjct: 106 VPLSLNFILNNCGRICPEDFTCP 128



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>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = +1

Query: 211 CSINTLKLGVCANVLNLL-KLKIGVPANEQXXXXXXXXXXXXXXXXXXXXMRANILGIKL 387
           C  + LKLGVCA+VLNL+  + IG P                        ++ANILG  L
Sbjct: 54  CPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNL 113

Query: 388 NVPIDLTLLLNQCGKKCPANFTC 456
           N+PI L+L+LN CGK+ P  F C
Sbjct: 114 NLPIALSLVLNNCGKQVPNGFEC 136



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>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +1

Query: 208 SCSINTLKLGVCANVLN-LLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXXMRANILGIK 384
           +C I+ LKLG C +VL  L+ + IG  A +                     +R  +L I 
Sbjct: 260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNIN 319

Query: 385 LNVPIDLTLLLNQCGKKCPANFTCP 459
           + +PI L +L++ CGK  P +F CP
Sbjct: 320 IILPIALQVLIDDCGKYPPKDFKCP 344



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>PDLI7_RAT (Q9Z1Z9) PDZ and LIM domain protein 7 (LIM mineralization protein)|
           (LMP) (Protein enigma)
          Length = 457

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 21/48 (43%), Positives = 26/48 (54%)
 Frame = +3

Query: 138 SLLPTSRPHPADPPTAGAAYRRGQLLDQHVEAGCVRQRVEPAEA*DWR 281
           SL  T+RP  A PPT  A  + GQLL Q V     ++ +E  E  DWR
Sbjct: 111 SLNKTARPFGAPPPTDSALSQNGQLLRQLVPDASKQRLMENTE--DWR 156



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>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)|
          Length = 80

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +1

Query: 373 LGIKLNVPIDLTLLLNQCGKKCPANFTCP 459
           LGI LN+  +L L+LN CG+  P+N TCP
Sbjct: 51  LGI-LNLNRNLQLILNSCGRSYPSNATCP 78



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>PDLI7_MOUSE (Q3TJD7) PDZ and LIM domain protein 7 (LIM mineralization protein)|
           (LMP) (Protein enigma)
          Length = 457

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +3

Query: 138 SLLPTSRPHPADPPTAGAAYRRGQLLDQHVEAGCVRQRVEPAEA*DWR 281
           SL  T+RP  A PPT     + GQLL Q V     ++ +E  E  DWR
Sbjct: 111 SLNKTARPFGAPPPTDSTLRQNGQLLRQPVPDASKQRLMEDTE--DWR 156



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>YG49_SCHPO (O60184) Protein C23E6.09 in chromosome II|
          Length = 1102

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 366 QHPRHQAQRPHRPDPPTQPV-RQEVPRQLH 452
           Q  + Q Q+P +P PP QP+ +Q+  RQLH
Sbjct: 177 QPQQQQHQQPQQPQPPQQPLQQQQQQRQLH 206



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>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 4 (Hyperpolarization-activated
           cation channel 4) (HAC-4)
          Length = 1175

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/25 (68%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +3

Query: 126 AGLRSLLPT--SRPHPADPPTAGAA 194
           AGL SLLPT  S P P  P TAGAA
Sbjct: 867 AGLGSLLPTAGSPPAPTPPTTAGAA 891



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>AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein|
          Length = 1259

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 372 PRHQAQRPHRPDPPTQPVRQEVP 440
           P+ Q QRP RP  PTQ + Q +P
Sbjct: 354 PQPQVQRPPRPQSPTQLLHQNLP 376



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>UPPP_STAES (Q8CTJ6) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 290

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 396 HRPDPPTQPVRQEVPRQLHLSHVIL 470
           H+P+P T   R+  PR+L+L HV++
Sbjct: 81  HKPEPSTSGDRRSKPRRLNLIHVLV 105



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>UPPP_STAEQ (Q5HR54) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 290

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 396 HRPDPPTQPVRQEVPRQLHLSHVIL 470
           H+P+P T   R+  PR+L+L HV++
Sbjct: 81  HKPEPSTSGDRRSKPRRLNLIHVLV 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,451,966
Number of Sequences: 219361
Number of extensions: 1074611
Number of successful extensions: 3531
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3509
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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