Clone Name | bart10d05 |
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Clone Library Name | barley_pub |
>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific| protein ZRP3) Length = 129 Score = 71.6 bits (174), Expect = 2e-12 Identities = 36/83 (43%), Positives = 47/83 (56%) Frame = +1 Query: 211 CSINTLKLGVCANVLNLLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXXMRANILGIKLN 390 C I+ LKL VCA VL L+K +G+P EQ ++AN+LGI LN Sbjct: 48 CPIDALKLKVCAKVLGLVK--VGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLN 105 Query: 391 VPIDLTLLLNQCGKKCPANFTCP 459 VP+ L +LN CG+ CP +FTCP Sbjct: 106 VPLSLNFILNNCGRICPEDFTCP 128
>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor| Length = 137 Score = 59.7 bits (143), Expect = 6e-09 Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 1/83 (1%) Frame = +1 Query: 211 CSINTLKLGVCANVLNLL-KLKIGVPANEQXXXXXXXXXXXXXXXXXXXXMRANILGIKL 387 C + LKLGVCA+VLNL+ + IG P ++ANILG L Sbjct: 54 CPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNL 113 Query: 388 NVPIDLTLLLNQCGKKCPANFTC 456 N+PI L+L+LN CGK+ P F C Sbjct: 114 NLPIALSLVLNNCGKQVPNGFEC 136
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 47.8 bits (112), Expect = 3e-05 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Frame = +1 Query: 208 SCSINTLKLGVCANVLN-LLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXXMRANILGIK 384 +C I+ LKLG C +VL L+ + IG A + +R +L I Sbjct: 260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNIN 319 Query: 385 LNVPIDLTLLLNQCGKKCPANFTCP 459 + +PI L +L++ CGK P +F CP Sbjct: 320 IILPIALQVLIDDCGKYPPKDFKCP 344
>PDLI7_RAT (Q9Z1Z9) PDZ and LIM domain protein 7 (LIM mineralization protein)| (LMP) (Protein enigma) Length = 457 Score = 33.9 bits (76), Expect = 0.38 Identities = 21/48 (43%), Positives = 26/48 (54%) Frame = +3 Query: 138 SLLPTSRPHPADPPTAGAAYRRGQLLDQHVEAGCVRQRVEPAEA*DWR 281 SL T+RP A PPT A + GQLL Q V ++ +E E DWR Sbjct: 111 SLNKTARPFGAPPPTDSALSQNGQLLRQLVPDASKQRLMENTE--DWR 156
>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)| Length = 80 Score = 33.9 bits (76), Expect = 0.38 Identities = 16/29 (55%), Positives = 21/29 (72%) Frame = +1 Query: 373 LGIKLNVPIDLTLLLNQCGKKCPANFTCP 459 LGI LN+ +L L+LN CG+ P+N TCP Sbjct: 51 LGI-LNLNRNLQLILNSCGRSYPSNATCP 78
>PDLI7_MOUSE (Q3TJD7) PDZ and LIM domain protein 7 (LIM mineralization protein)| (LMP) (Protein enigma) Length = 457 Score = 33.1 bits (74), Expect = 0.65 Identities = 20/48 (41%), Positives = 25/48 (52%) Frame = +3 Query: 138 SLLPTSRPHPADPPTAGAAYRRGQLLDQHVEAGCVRQRVEPAEA*DWR 281 SL T+RP A PPT + GQLL Q V ++ +E E DWR Sbjct: 111 SLNKTARPFGAPPPTDSTLRQNGQLLRQPVPDASKQRLMEDTE--DWR 156
>YG49_SCHPO (O60184) Protein C23E6.09 in chromosome II| Length = 1102 Score = 30.8 bits (68), Expect = 3.2 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = +3 Query: 366 QHPRHQAQRPHRPDPPTQPV-RQEVPRQLH 452 Q + Q Q+P +P PP QP+ +Q+ RQLH Sbjct: 177 QPQQQQHQQPQQPQPPQQPLQQQQQQRQLH 206
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/25 (68%), Positives = 17/25 (68%), Gaps = 2/25 (8%) Frame = +3 Query: 126 AGLRSLLPT--SRPHPADPPTAGAA 194 AGL SLLPT S P P P TAGAA Sbjct: 867 AGLGSLLPTAGSPPAPTPPTTAGAA 891
>AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein| Length = 1259 Score = 29.6 bits (65), Expect = 7.2 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3 Query: 372 PRHQAQRPHRPDPPTQPVRQEVP 440 P+ Q QRP RP PTQ + Q +P Sbjct: 354 PQPQVQRPPRPQSPTQLLHQNLP 376
>UPPP_STAES (Q8CTJ6) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl| pyrophosphate phosphatase) (Bacitracin resistance protein) Length = 290 Score = 29.3 bits (64), Expect = 9.4 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 396 HRPDPPTQPVRQEVPRQLHLSHVIL 470 H+P+P T R+ PR+L+L HV++ Sbjct: 81 HKPEPSTSGDRRSKPRRLNLIHVLV 105
>UPPP_STAEQ (Q5HR54) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl| pyrophosphate phosphatase) (Bacitracin resistance protein) Length = 290 Score = 29.3 bits (64), Expect = 9.4 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +3 Query: 396 HRPDPPTQPVRQEVPRQLHLSHVIL 470 H+P+P T R+ PR+L+L HV++ Sbjct: 81 HKPEPSTSGDRRSKPRRLNLIHVLV 105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,451,966 Number of Sequences: 219361 Number of extensions: 1074611 Number of successful extensions: 3531 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3283 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3509 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)