ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart10d03 |
|---|---|
| Clone Library Name | barley_pub |
>CSKI2_MOUSE (Q8VHK1) Caskin-2| Length = 1201 Score = 34.3 bits (77), Expect = 0.23 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -1 Query: 360 ASRVGNPPAPARQTSTLLGSSRNPSGNDCPGPKRSAAG 247 A R G PP P ++ S++ GS+ PS + GPK A G Sbjct: 860 ARRKGPPPPPPKRLSSVSGSTEPPSLDGTSGPKEGATG 897
>CSKI2_HUMAN (Q8WXE0) Caskin-2| Length = 1202 Score = 32.0 bits (71), Expect = 1.1 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -1 Query: 360 ASRVGNPPAPARQTSTLLGSSRNPSGND-CPGPKRSAAG 247 A R G PP P ++ S++ G S P D PGPK A G Sbjct: 863 ARRKGPPPPPPKRLSSVSGPSPEPPPLDGSPGPKEGATG 901
>WHRN_MOUSE (Q80VW5) Whirlin| Length = 906 Score = 32.0 bits (71), Expect = 1.1 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Frame = -1 Query: 495 GTAPVVESLEPRRPKGLLSVGNLSRRTTNETGGAELSTVKLVLKDASRVGNPPAP---AR 325 GT+ V S R L G ++ +TN + VK +D + PP P A+ Sbjct: 534 GTSTTVSSA--RNTLDLEGTGETTQGSTNALPDVSVDDVKSPSEDLPGIKPPPPPPPLAQ 591 Query: 324 QTSTLLGSSRNPSGNDCPGPKRSAA 250 LLG R P G + P P SAA Sbjct: 592 GHDRLLGQPRKP-GREDPAPLSSAA 615
>CISY_HUMAN (O75390) Citrate synthase, mitochondrial precursor (EC 2.3.3.1)| Length = 466 Score = 30.8 bits (68), Expect = 2.6 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 10/84 (11%) Frame = +2 Query: 233 TSIIMPAALLFGPGQSFPEGFLLLPKRVD---------VWRAGAGGLPTRE-ASFNTSFT 382 TS++ P + G S PE LLPK W G +PT E S+ + Sbjct: 82 TSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTEEQVSWLSKEW 141 Query: 383 VESSAPPVSFVVLLDRFPTLNNPL 454 + +A P V +LD FPT +P+ Sbjct: 142 AKRAALPSHVVTMLDNFPTNLHPM 165
>CISY_PIG (P00889) Citrate synthase, mitochondrial precursor (EC 2.3.3.1)| Length = 464 Score = 30.8 bits (68), Expect = 2.6 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 10/84 (11%) Frame = +2 Query: 233 TSIIMPAALLFGPGQSFPEGFLLLPKRVD---------VWRAGAGGLPTRE-ASFNTSFT 382 TS++ P + G S PE +LPK W G +PT E S+ + Sbjct: 82 TSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEW 141 Query: 383 VESSAPPVSFVVLLDRFPTLNNPL 454 + +A P V +LD FPT +P+ Sbjct: 142 AKRAALPSHVVTMLDNFPTNLHPM 165
>YMX6_YEAST (Q04279) Hypothetical 105.9 kDa protein in ADH3-RCA1 intergenic| region Length = 960 Score = 30.4 bits (67), Expect = 3.3 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = -1 Query: 492 TAPVVESLEPRRPKGLLSVGNLSRRTTNETGGAELSTVKLVLKDASRVGNPPAPARQT-- 319 TAP +E +P S+G L + N++ + T + + + P AP R + Sbjct: 7 TAPEMEQADPTAVAAAASIGKLLMKKGNQSDNEQRPTYRSA--SMTNLRKPSAPKRMSSI 64 Query: 318 STLLGSSRNPSGNDCPG 268 S++ SR G PG Sbjct: 65 SSISSESRRSDGKGRPG 81
>CISY_MOUSE (Q9CZU6) Citrate synthase, mitochondrial precursor (EC 2.3.3.1)| Length = 464 Score = 30.4 bits (67), Expect = 3.3 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 10/84 (11%) Frame = +2 Query: 233 TSIIMPAALLFGPGQSFPEGFLLLPKRVD---------VWRAGAGGLPTRE-ASFNTSFT 382 TS++ P + G S PE +LPK W G +PT E S+ + Sbjct: 82 TSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQMPTEEQVSWLSREW 141 Query: 383 VESSAPPVSFVVLLDRFPTLNNPL 454 + +A P V +LD FPT +P+ Sbjct: 142 AKRAALPSHVVTMLDNFPTNLHPM 165
>ARVC_MOUSE (P98203) Armadillo repeat protein deleted in velo-cardio-facial| syndrome homolog Length = 962 Score = 30.4 bits (67), Expect = 3.3 Identities = 20/79 (25%), Positives = 33/79 (41%) Frame = -1 Query: 543 DLTVPISTAARPSVALGTAPVVESLEPRRPKGLLSVGNLSRRTTNETGGAELSTVKLVLK 364 D T+P+ + T V+ ++ P G +V RRT + S +L+ Sbjct: 870 DSTLPLVDKSLDGEKSNTRDVIP-MDTLGPDGYATVDRRERRTLGSDSTGDTSEKELLRP 928 Query: 363 DASRVGNPPAPARQTSTLL 307 D R PP P+R + L+ Sbjct: 929 DPGRKAPPPGPSRPSVRLV 947
>IF2_BURPS (Q63TP8) Translation initiation factor IF-2| Length = 975 Score = 30.4 bits (67), Expect = 3.3 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Frame = -3 Query: 385 HREARVEGRLACR*PA------GAGAPDVDPLGEQQKPLGKRLPGPEEERCRHDDGRVRG 224 H+ A+ G A PA GA AP P G++ K G G +++ + + RG Sbjct: 298 HKPAKPAGEAAAARPAAKKPASGAPAPAAAPAGDRTKKPGTGKSGWQDDAAKRRGIKTRG 357 Query: 223 DPQALGRGGVEDG 185 D GGV+ G Sbjct: 358 D----SSGGVDRG 366
>IF2_BURP1 (Q3JSY9) Translation initiation factor IF-2| Length = 975 Score = 30.4 bits (67), Expect = 3.3 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Frame = -3 Query: 385 HREARVEGRLACR*PA------GAGAPDVDPLGEQQKPLGKRLPGPEEERCRHDDGRVRG 224 H+ A+ G A PA GA AP P G++ K G G +++ + + RG Sbjct: 298 HKPAKPAGEAAAARPAAKKPASGAPAPAAAPAGDRTKKPGTGKSGWQDDAAKRRGIKTRG 357 Query: 223 DPQALGRGGVEDG 185 D GGV+ G Sbjct: 358 D----SSGGVDRG 366
>IF2_BURMA (Q62KK9) Translation initiation factor IF-2| Length = 975 Score = 30.4 bits (67), Expect = 3.3 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Frame = -3 Query: 385 HREARVEGRLACR*PA------GAGAPDVDPLGEQQKPLGKRLPGPEEERCRHDDGRVRG 224 H+ A+ G A PA GA AP P G++ K G G +++ + + RG Sbjct: 298 HKPAKPAGEAAAARPAAKKPASGAPAPAAAPAGDRTKKPGTGKSGWQDDAAKRRGIKTRG 357 Query: 223 DPQALGRGGVEDG 185 D GGV+ G Sbjct: 358 D----SSGGVDRG 366
>MILK1_HUMAN (Q8N3F8) Molecule interacting with Rab13 (MIRab13) (MICAL-like| protein 1) Length = 863 Score = 30.0 bits (66), Expect = 4.4 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 3/86 (3%) Frame = -1 Query: 531 PISTAARPSVALGTAPVVESLEPRR-PKGLLSVGNLSRRTTNETGGAELSTVKLVLKDAS 355 P + +A P +AL + + S P P LSV +LS + ++T GAEL V K +S Sbjct: 480 PRAPSASP-LALHASRLSHSEPPSATPSPALSVESLSSESASQTAGAELLEPPAVPKSSS 538 Query: 354 R--VGNPPAPARQTSTLLGSSRNPSG 283 V P P S SS SG Sbjct: 539 EPAVHAPGTPGNPVSLSTNSSLASSG 564
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 29.6 bits (65), Expect = 5.7 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%) Frame = -1 Query: 447 LLSVGNLSRRTTNETGGAELSTVKLVLKDASRVGNPPAPARQTSTLLGSSRNPSGNDCPG 268 L S+ R + +GG +L V+ + + P A S LLG+ P G PG Sbjct: 2109 LNSMDQYGGRHGSGSGGPDL--VQYQPQHGPGLSAPQGLAPLRSGLLGNPTYPEGQPSPG 2166 Query: 267 ------PKRSAAGMMMDVFVATHRLSVVVALKTGKLWDSTSAAAGATMIVAAHSSTRARA 106 P S A + + +T V G ++ + + AT+ + T A Sbjct: 2167 NLAQYGPAASQATAVRQLLPST----ATVRAADGMIYSTINTPIAATLPI-----TTQPA 2217 Query: 105 AILQPMVSLGMF 70 ++L+PMV GM+ Sbjct: 2218 SVLRPMVRGGMY 2229
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 29.3 bits (64), Expect = 7.5 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -1 Query: 360 ASRVGNPPAPARQTSTLLGSSRNPSGNDCPGPKR 259 A R G PP A SR+PSG+ P P+R Sbjct: 801 APRSGGPPRKAGSVDNRSPLSRSPSGSRSPSPRR 834
>PGCB_RAT (P55068) Brevican core protein precursor (Brain-enriched| hyaluronan-binding protein) (BEHAB protein) [Contains: Brevican core protein isoform 1; Brevican core protein isoform 2] Length = 883 Score = 29.3 bits (64), Expect = 7.5 Identities = 21/54 (38%), Positives = 26/54 (48%) Frame = -1 Query: 540 LTVPISTAARPSVALGTAPVVESLEPRRPKGLLSVGNLSRRTTNETGGAELSTV 379 L V S + RP G P VE+L+P L S + +R ETG ELS V Sbjct: 501 LQVGASPSPRPPRVHG--PTVETLQPPGEGSLTSTPDGAREVGGETGSPELSGV 552
>HCFC1_HUMAN (P51610) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory| protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain Length = 2035 Score = 29.3 bits (64), Expect = 7.5 Identities = 43/182 (23%), Positives = 61/182 (33%), Gaps = 36/182 (19%) Frame = -1 Query: 528 ISTAA--RPSVALGT---APVVESLEPRRPKGLLSVGNLSRRT----------------T 412 +STAA R SV G APV ESL+ P ++V L T Sbjct: 1237 VSTAAMTRSSVGAGEPRMAPVCESLQGGSPSTTVTVTALEALLCPSATVTQVCSNPPCET 1296 Query: 411 NETGGAELSTVKLVLKDASRVGNPPAPARQTSTL---------------LGSSRNPSGND 277 +ETG +T NPP +T T G + P+G Sbjct: 1297 HETGTTNTATTSNAGSAQRVCSNPPCETHETGTTHTATTATSNGGTGQPEGGQQPPAGRP 1356 Query: 276 CPGPKRSAAGMMMDVFVATHRLSVVVALKTGKLWDSTSAAAGATMIVAAHSSTRARAAIL 97 C + ++ G M V V AL + +G + A + +A A+L Sbjct: 1357 CETHQTTSTGTTMSVSVG--------ALLPDATSSHRTVESGLEVAAAPSVTPQAGTALL 1408 Query: 96 QP 91 P Sbjct: 1409 AP 1410
>ARVC_HUMAN (O00192) Armadillo repeat protein deleted in velo-cardio-facial| syndrome Length = 962 Score = 29.3 bits (64), Expect = 7.5 Identities = 20/79 (25%), Positives = 33/79 (41%) Frame = -1 Query: 543 DLTVPISTAARPSVALGTAPVVESLEPRRPKGLLSVGNLSRRTTNETGGAELSTVKLVLK 364 D T+P+ + G+ V+ ++ P G +V RR + E S + + Sbjct: 870 DSTLPLVDKSLEGEKTGSRDVIP-MDALGPDGYSTVDRRERRPRGASSAGEASEKEPLKL 928 Query: 363 DASRVGNPPAPARQTSTLL 307 D SR PP P+R L+ Sbjct: 929 DPSRKAPPPGPSRPAVRLV 947
>ATG2_YEAST (P53855) Autophagy-related protein 2 (Sporulation-specific protein| 72) Length = 1592 Score = 28.9 bits (63), Expect = 9.7 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Frame = +2 Query: 305 PKRVDVWRAGAGGLPTREASFNTSFTVESSAPPVSFVVL--LDRFPTLNNPLGLRGSNDS 478 PK+VD AG + + FT++ S + VVL L+ F LNN L + D Sbjct: 1279 PKKVDY----AGLRSGQTSELMNFFTLDGSKIILKSVVLYGLNGFDELNNKLKAIWTPDI 1334 Query: 479 TTGAVPNATDGLAAV 523 T +P +GLA V Sbjct: 1335 TKKQLPGVLEGLAPV 1349
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 28.9 bits (63), Expect = 9.7 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 16/98 (16%) Frame = -1 Query: 519 AARPSVALGTAPVVESLEPRRPK-----------GLLSVGNLSRRTTN-ETGGAEL---- 388 A A A V +SL P +PK G+L G+ S T ++ A L Sbjct: 44 ATEEQTASAKAAVEKSLNPNKPKTQPQQSQEITQGVLGSGSSSSSTRGGDSAAAPLDPPK 103 Query: 387 STVKLVLKDASRVGNPPAPARQTSTLLGSSRNPSGNDC 274 ST L +VG R ST G+ R P ++C Sbjct: 104 STATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHEC 141
>WBS14_HUMAN (Q9NP71) Williams-Beuren syndrome chromosome region 14 protein (WS| basic-helix-loop-helix leucine zipper protein) (WS-bHLH) (Mlx interactor) (MLX-interacting protein-like) Length = 852 Score = 28.9 bits (63), Expect = 9.7 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -1 Query: 342 PPAPARQTSTLLGSSRNPSGNDCPGPKRSAAGMMMD 235 PPA + T L G SR + N CPGP S+A + D Sbjct: 341 PPASSAMTH-LSGHSRLQARNSCPGPLDSSAFLSSD 375
>V33P_ADE05 (P24940) 33 kDa phosphoprotein| Length = 229 Score = 28.9 bits (63), Expect = 9.7 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = -1 Query: 273 PGPKRSAAGMMMDVFVATHRLSVVVALKTGKLWDSTSAAAGATMIVAAHSSTRARA 106 P P++SA G M A + + + WD+T A T AA ++ A A Sbjct: 66 PAPQKSATGSSMATTSAPQAPPALPVRRPNRRWDTTGTRAAHTAPAAAAAAATAAA 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,862,933 Number of Sequences: 219361 Number of extensions: 1197352 Number of successful extensions: 5235 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4732 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5162 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
