ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart10d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471005.1| Oryza sativa (japonica cultivar-group), predic... 48 0.030
2ref|XM_471003.1| Oryza sativa (japonica cultivar-group), predic... 48 0.030
3emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4,... 48 0.030
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.030
5dbj|AK062396.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.030
6dbj|AK061191.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.030
7emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 48 0.030
8gb|AC007964.3| Homo sapiens BAC clone GS1-179L18 from 7, complet... 44 0.47
9gb|AC152063.5| Mus musculus BAC clone RP23-204I16 from chromosom... 42 1.9
10gb|AC107681.15| Mus musculus chromosome 12, clone RP23-380M24, c... 42 1.9
11emb|CR812469.6| Zebrafish DNA sequence from clone DKEY-286F3 in ... 42 1.9
12emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.9
13emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g... 42 1.9
14emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4,... 42 1.9
15emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4,... 42 1.9
16emb|AJ320506.1|MMU320506 Mus musculus Dlk1 gene for delta-like a... 42 1.9
17emb|CR786568.9| Zebrafish DNA sequence from clone DKEY-251I10 in... 42 1.9
18emb|CR376801.8| Zebrafish DNA sequence from clone CH211-13K18 in... 42 1.9
19dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 42 1.9
20gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 42 1.9
21gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence 42 1.9
22dbj|AK063095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
23emb|AL606481.8| Zebrafish DNA sequence from clone BUSM1-99M4 Con... 42 1.9
24gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 42 1.9
25emb|AL603743.8| Zebrafish DNA sequence from clone RP71-98D8 Cont... 42 1.9
26ref|XM_479697.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.4
27gb|DQ216459.1| Taeniopygia guttata clone 0058P0019B07 RIKEN cDNA... 40 7.4
28gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 7.4
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.4
30gb|AC126937.3| Mus musculus BAC clone RP24-250G8 from chromosome... 40 7.4
31emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chrom... 40 7.4
32gb|AC074336.14| Mus musculus Strain C57BL6/J chromosome 1 BAC, R... 40 7.4
33gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 7.4
34emb|BX530017.13| Zebrafish DNA sequence from clone CH211-242H13 ... 40 7.4
35gb|AC135464.13| Medicago truncatula clone mth2-17k21, complete s... 40 7.4
36gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.4
37emb|BX120000.8| Zebrafish DNA sequence from clone CH211-214C13 i... 40 7.4
38dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
39dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
40gb|AC009118.11| Homo sapiens chromosome 16 clone RP11-481J2, com... 40 7.4
41gb|AC010287.9| Homo sapiens chromosome 16 clone CTA-331F8, compl... 40 7.4
42gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.4
43gb|AC007448.14| Homo sapiens chromosome 17, clone RP11-401F2, co... 40 7.4
44dbj|BS000239.1| Pan troglodytes chromosome 22 clone:PTB-153E07, ... 40 7.4
45gb|AE005126.1| Halobacterium sp. NRC-1 section 157 of 170 of the... 40 7.4
46dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
47dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
48dbj|AK103073.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
49emb|AL845481.5| Zebrafish DNA sequence from clone DKEY-46N18 in ... 40 7.4
50gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 7.4
51emb|CT009658.7| Mouse DNA sequence from clone CH29-505N5 on chro... 40 7.4 
>ref|XM_471005.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 912

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 496 caacgccacggacggcctcgccgcggtcgagatcggcacggtga 539
           |||||||||| || |||||| ||| |||||| ||||||||||||
Sbjct: 423 caacgccacgaacagcctcgtcgccgtcgaggtcggcacggtga 466



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 410 ttcgtcgtcctcctcgacaggt 431
           ||||||||||||||||||||||
Sbjct: 331 ttcgtcgtcctcctcgacaggt 352
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>ref|XM_471003.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 981

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 410 ttcgtcgtcctcctcgacaggttcccgacgct 441
           |||||||||||||||||||| |||||| ||||
Sbjct: 316 ttcgtcgtcctcctcgacagcttcccgccgct 347
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>emb|AL606642.3|OSJN00073 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H06,
              complete sequence
          Length = 143730

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 496    caacgccacggacggcctcgccgcggtcgagatcggcacggtga 539
              |||||||||| || |||||| ||| |||||| ||||||||||||
Sbjct: 115501 caacgccacgaacagcctcgtcgccgtcgaggtcggcacggtga 115458



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 410   ttcgtcgtcctcctcgacaggttcccgacgct 441
             |||||||||||||||||||| |||||| ||||
Sbjct: 91304 ttcgtcgtcctcctcgacagcttcccgccgct 91273



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 410    ttcgtcgtcctcctcgacaggt 431
              ||||||||||||||||||||||
Sbjct: 115593 ttcgtcgtcctcctcgacaggt 115572
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 496    caacgccacggacggcctcgccgcggtcgagatcggcacggtga 539
              |||||||||| || |||||| ||| |||||| ||||||||||||
Sbjct: 584534 caacgccacgaacagcctcgtcgccgtcgaggtcggcacggtga 584491



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 410    ttcgtcgtcctcctcgacaggttcccgacgct 441
              |||||||||||||||||||| |||||| ||||
Sbjct: 560337 ttcgtcgtcctcctcgacagcttcccgccgct 560306



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 410    ttcgtcgtcctcctcgacaggt 431
              ||||||||||||||||||||||
Sbjct: 584626 ttcgtcgtcctcctcgacaggt 584605



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 76       acccaaagaaaccataggctg 96
                |||||||||||||||||||||
Sbjct: 33657545 acccaaagaaaccataggctg 33657565
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>dbj|AK062396.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-D08, full
           insert sequence
          Length = 1092

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 496 caacgccacggacggcctcgccgcggtcgagatcggcacggtga 539
           |||||||||| || |||||| ||| |||||| ||||||||||||
Sbjct: 462 caacgccacgaacagcctcgtcgccgtcgaggtcggcacggtga 505



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 410 ttcgtcgtcctcctcgacaggt 431
           ||||||||||||||||||||||
Sbjct: 370 ttcgtcgtcctcctcgacaggt 391
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>dbj|AK061191.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-F07, full
           insert sequence
          Length = 1346

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 410 ttcgtcgtcctcctcgacaggttcccgacgct 441
           |||||||||||||||||||| |||||| ||||
Sbjct: 391 ttcgtcgtcctcctcgacagcttcccgccgct 422
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>emb|AL442118.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0201G08, complete
             sequence
          Length = 121821

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 496   caacgccacggacggcctcgccgcggtcgagatcggcacggtga 539
             |||||||||| || |||||| ||| |||||| ||||||||||||
Sbjct: 59729 caacgccacgaacagcctcgtcgccgtcgaggtcggcacggtga 59686



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 410   ttcgtcgtcctcctcgacaggttcccgacgct 441
             |||||||||||||||||||| |||||| ||||
Sbjct: 35705 ttcgtcgtcctcctcgacagcttcccgccgct 35674



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 410   ttcgtcgtcctcctcgacaggt 431
             ||||||||||||||||||||||
Sbjct: 59821 ttcgtcgtcctcctcgacaggt 59800
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>gb|AC007964.3| Homo sapiens BAC clone GS1-179L18 from 7, complete sequence
          Length = 154706

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 12    cacacacaaatacacaacagacatac 37
             ||||||||||||||||||| ||||||
Sbjct: 97721 cacacacaaatacacaacacacatac 97746
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>gb|AC152063.5| Mus musculus BAC clone RP23-204I16 from chromosome 12, complete sequence
          Length = 209416

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 2      ataccccaatcacacacaaatacacaacagaca 34
              |||||||||||||||||| | ||| ||||||||
Sbjct: 167464 ataccccaatcacacacagacacagaacagaca 167432
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>gb|AC107681.15| Mus musculus chromosome 12, clone RP23-380M24, complete sequence
          Length = 186496

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 2     ataccccaatcacacacaaatacacaacagaca 34
             |||||||||||||||||| | ||| ||||||||
Sbjct: 41281 ataccccaatcacacacagacacagaacagaca 41249
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>emb|CR812469.6| Zebrafish DNA sequence from clone DKEY-286F3 in linkage group 5,
             complete sequence
          Length = 162086

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 12    cacacacaaatacacaacagacata 36
             ||||||||||||||||||| |||||
Sbjct: 86219 cacacacaaatacacaacacacata 86195
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 141    tcatggtggcgccggcggccg 161
              |||||||||||||||||||||
Sbjct: 149446 tcatggtggcgccggcggccg 149466
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>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 141    tcatggtggcgccggcggccg 161
              |||||||||||||||||||||
Sbjct: 305230 tcatggtggcgccggcggccg 305250
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>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23,
             complete sequence
          Length = 149353

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    acccaaagaaaccataggctg 96
             |||||||||||||||||||||
Sbjct: 88605 acccaaagaaaccataggctg 88625
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>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02,
            complete sequence
          Length = 153623

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 76   acccaaagaaaccataggctg 96
            |||||||||||||||||||||
Sbjct: 7988 acccaaagaaaccataggctg 8008
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>emb|AJ320506.1|MMU320506 Mus musculus Dlk1 gene for delta-like and Gtl2 gene
          Length = 111805

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 2     ataccccaatcacacacaaatacacaacagaca 34
             |||||||||||||||||| | ||| ||||||||
Sbjct: 75625 ataccccaatcacacacagacacagaacagaca 75657
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>emb|CR786568.9| Zebrafish DNA sequence from clone DKEY-251I10 in linkage group 5,
             complete sequence
          Length = 134388

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 8     caatcacacacaaatacacaa 28
             |||||||||||||||||||||
Sbjct: 19770 caatcacacacaaatacacaa 19790
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>emb|CR376801.8| Zebrafish DNA sequence from clone CH211-13K18 in linkage group 10,
             complete sequence
          Length = 199715

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    cacacaaatacacaacagaca 34
             |||||||||||||||||||||
Sbjct: 24200 cacacaaatacacaacagaca 24180
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 322    ctggcgcgccggcgccggcgg 342
              |||||||||||||||||||||
Sbjct: 823080 ctggcgcgccggcgccggcgg 823100



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    gccggcggccgcggacgtgg 170
              ||||||||||||||||||||
Sbjct: 607888 gccggcggccgcggacgtgg 607907
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 492    tgcccaacgccacggacggcc 512
              |||||||||||||||||||||
Sbjct: 347236 tgcccaacgccacggacggcc 347256
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>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence
          Length = 181577

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    acccaaagaaaccataggctg 96
             |||||||||||||||||||||
Sbjct: 88705 acccaaagaaaccataggctg 88725
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>dbj|AK063095.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-B06, full
           insert sequence
          Length = 597

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 76  acccaaagaaaccataggctg 96
           |||||||||||||||||||||
Sbjct: 429 acccaaagaaaccataggctg 449
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>emb|AL606481.8| Zebrafish DNA sequence from clone BUSM1-99M4 Contains a novel gene
            for a protein with an immunoglobulin domain, complete
            sequence
          Length = 104752

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 14   cacacaaatacacaacagaca 34
            |||||||||||||||||||||
Sbjct: 6671 cacacaaatacacaacagaca 6691
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 322    ctggcgcgccggcgccggcgg 342
              |||||||||||||||||||||
Sbjct: 854777 ctggcgcgccggcgccggcgg 854797



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    gccggcggccgcggacgtgg 170
              ||||||||||||||||||||
Sbjct: 619909 gccggcggccgcggacgtgg 619928
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>emb|AL603743.8| Zebrafish DNA sequence from clone RP71-98D8 Contains the putative
            novel retrotransposon GYPSYDR2, the putative transposon
            TC1DR1 similar to C. elegans transposons and four CpG
            islands, complete sequence
          Length = 100214

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 14   cacacaaatacacaacagaca 34
            |||||||||||||||||||||
Sbjct: 7627 cacacaaatacacaacagaca 7607
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>ref|XM_479697.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 675

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 ggcgcgccggcgccggcggg 343
           ||||||||||||||||||||
Sbjct: 407 ggcgcgccggcgccggcggg 388
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>gb|DQ216459.1| Taeniopygia guttata clone 0058P0019B07 RIKEN cDNA 5730469M10
           variant 2-like mRNA, complete sequence
          Length = 1248

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 ggtggcgccggcggccgcgg 164
           ||||||||||||||||||||
Sbjct: 4   ggtggcgccggcggccgcgg 23
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 515    gccgcggtcgagatcggcacggtg 538
              ||||||| ||||||||||||||||
Sbjct: 839857 gccgcggccgagatcggcacggtg 839880
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 58       gctgcaacctgcaaacatac 77
                ||||||||||||||||||||
Sbjct: 12264514 gctgcaacctgcaaacatac 12264495
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>gb|AC126937.3| Mus musculus BAC clone RP24-250G8 from chromosome 17, complete sequence
          Length = 150579

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ctgctgctccccaagagggt 315
             ||||||||||||||||||||
Sbjct: 55534 ctgctgctccccaagagggt 55553
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>emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chromosome 17, complete
              sequence
          Length = 226856

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    ctgctgctccccaagagggt 315
              ||||||||||||||||||||
Sbjct: 215022 ctgctgctccccaagagggt 215003
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>gb|AC074336.14| Mus musculus Strain C57BL6/J chromosome 1 BAC, RP23-366C17, Complete
              Sequence, complete sequence
          Length = 217768

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     aacatacccaaagaaaccat 90
              ||||||||||||||||||||
Sbjct: 129383 aacatacccaaagaaaccat 129402
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 135     ccacgatcatggtggcgccg 154
               ||||||||||||||||||||
Sbjct: 6811977 ccacgatcatggtggcgccg 6811996
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>emb|BX530017.13| Zebrafish DNA sequence from clone CH211-242H13 in linkage group 6,
             complete sequence
          Length = 164713

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    tcacacacaaatacacaacagaca 34
             ||||||||| ||||||||||||||
Sbjct: 81688 tcacacacacatacacaacagaca 81665
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>gb|AC135464.13| Medicago truncatula clone mth2-17k21, complete sequence
          Length = 105376

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     aataccccaatcacacacaaatac 24
             ||||||||||||| ||||||||||
Sbjct: 96915 aataccccaatcaaacacaaatac 96892
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 512     ctcgccgcggtcgagatcgg 531
               ||||||||||||||||||||
Sbjct: 1917775 ctcgccgcggtcgagatcgg 1917756
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>emb|BX120000.8| Zebrafish DNA sequence from clone CH211-214C13 in linkage group 17,
             complete sequence
          Length = 214728

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    tcacacacaaatacacaacagaca 34
             ||||||||| ||||||||||||||
Sbjct: 59318 tcacacacacatacacaacagaca 59295
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    ggcgcgccggcgccggcggg 343
              ||||||||||||||||||||
Sbjct: 316138 ggcgcgccggcgccggcggg 316157
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 58       gctgcaacctgcaaacatac 77
                ||||||||||||||||||||
Sbjct: 12261277 gctgcaacctgcaaacatac 12261258
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>gb|AC009118.11| Homo sapiens chromosome 16 clone RP11-481J2, complete sequence
          Length = 187988

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    aagcagataagctgcaacctgcaa 71
             ||||||| ||||||||||||||||
Sbjct: 23853 aagcagaaaagctgcaacctgcaa 23830
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>gb|AC010287.9| Homo sapiens chromosome 16 clone CTA-331F8, complete sequence
          Length = 198949

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    aagcagataagctgcaacctgcaa 71
             ||||||| ||||||||||||||||
Sbjct: 19344 aagcagaaaagctgcaacctgcaa 19367
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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    gctgcaacctgcaaacatac 77
             ||||||||||||||||||||
Sbjct: 34047 gctgcaacctgcaaacatac 34028
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>gb|AC007448.14| Homo sapiens chromosome 17, clone RP11-401F2, complete sequence
          Length = 195558

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 55     taagctgcaacctgcaaacatacc 78
              ||||||||||||| ||||||||||
Sbjct: 166025 taagctgcaaccttcaaacatacc 166002
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>dbj|BS000239.1| Pan troglodytes chromosome 22 clone:PTB-153E07, map 22, complete
             sequences
          Length = 209016

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 10    atcacacacaaatacacaacagacatac 37
             |||||||||||| |||| ||||||||||
Sbjct: 43746 atcacacacaaacacaccacagacatac 43719
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>gb|AE005126.1| Halobacterium sp. NRC-1 section 157 of 170 of the complete genome
          Length = 10575

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 149  gcgccggcggccgcggacgtggag 172
            |||||| |||||||||||||||||
Sbjct: 2088 gcgccgacggccgcggacgtggag 2065
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>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0450B04
          Length = 153268

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   ggcgcgccggcgccggcggg 343
             ||||||||||||||||||||
Sbjct: 25652 ggcgcgccggcgccggcggg 25671
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>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1300_E01
          Length = 103022

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   ggcgcgccggcgccggcggg 343
             ||||||||||||||||||||
Sbjct: 82564 ggcgcgccggcgccggcggg 82583
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>dbj|AK103073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118C07, full
            insert sequence
          Length = 2233

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 58   gctgcaacctgcaaacatac 77
            ||||||||||||||||||||
Sbjct: 2111 gctgcaacctgcaaacatac 2092
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>emb|AL845481.5| Zebrafish DNA sequence from clone DKEY-46N18 in linkage group 17,
             complete sequence
          Length = 237313

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    tcacacacaaatacacaacagaca 34
             ||||||||| ||||||||||||||
Sbjct: 86792 tcacacacacatacacaacagaca 86815
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 513    tcgccgcggtcgagatcggc 532
              ||||||||||||||||||||
Sbjct: 662494 tcgccgcggtcgagatcggc 662513
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>emb|CT009658.7| Mouse DNA sequence from clone CH29-505N5 on chromosome 17, complete
             sequence
          Length = 190153

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   ctgctgctccccaagagggt 315
             ||||||||||||||||||||
Sbjct: 85208 ctgctgctccccaagagggt 85189


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,730,142
Number of Sequences: 3902068
Number of extensions: 3730142
Number of successful extensions: 105258
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104010
Number of HSP's gapped (non-prelim): 1248
length of query: 543
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 520
effective length of database: 17,143,297,704
effective search space: 8914514806080
effective search space used: 8914514806080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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