ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart10d02 |
|---|---|
| Clone Library Name | barley_pub |
>YIY4_SCHPO (Q9UUI8) Protein C22F8.04 in chromosome I| Length = 383 Score = 45.4 bits (106), Expect = 1e-04 Identities = 39/153 (25%), Positives = 70/153 (45%) Frame = +3 Query: 129 ALGLSVTSSVAIVICNKYLMSTLKFYFATTLTSWHLLVTFCTLHIAQRLRFFEAKPIDAQ 308 A+ +++ + A+ I N L+ L F A T + F ++H Q LR A + Sbjct: 100 AILVTILNKQALNIINAPLLM-LSFQMAFTSLMVKMYWRFSSVHF-QTLRLASAIQLK-- 155 Query: 309 TVISFGFLNGISIGLLNLCLGFNSVGFYQMTKLAIIPFTMLLETIFLSKKFSQSIKASLM 488 F F+ + I CL F V FYQ+++ ++PFT+LL + L +K + Sbjct: 156 ---KFIFVKILGIVSKTYCLAFVPVSFYQISRGLLLPFTILLSFVLLKQKTRLFPFGGCL 212 Query: 489 VLLLGVGIASVTDLQLNLLGSIIAVLTIAATCV 587 +++LG G + + +G I+ V + T + Sbjct: 213 LVMLGFGFGVRFESHVAPIGIILGVWSSFTTAI 245
>FUCT1_CAEEL (Q968A5) GDP-fucose transporter| Length = 363 Score = 45.1 bits (105), Expect = 2e-04 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 13/151 (8%) Frame = +3 Query: 153 SVAIVICNKYLMSTLKFYFATTLTSWHLLVT-FCTLHIAQRLRF-----FEAKPIDAQT- 311 S+ +V NKYL+S+++ +T + LVT F L +++ + F + PIDA+ Sbjct: 41 SIGLVFLNKYLLSSVQLDAPLFITWYQCLVTVFLCLFLSKTSKAYGLFKFPSMPIDAKIS 100 Query: 312 --VISFGFLNGISIGLLNLCLGFNSVGFYQMTKLAIIPFTMLLETIFLSKKFS-QSIKAS 482 V+ + I NLCL + V FY + + F ++ + L +K S Q+I Sbjct: 101 REVLPLSVVFVAMISFNNLCLKYVGVSFYYVGRSLTTVFNVVCTYLILGQKTSGQAIGCC 160 Query: 483 LMVL---LLGVGIASVTDLQLNLLGSIIAVL 566 +++ LLGV VT L+ G I VL Sbjct: 161 ALIIFGFLLGVDQEGVTG-TLSYTGVIFGVL 190
>YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I| Length = 374 Score = 41.2 bits (95), Expect = 0.002 Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 10/147 (6%) Frame = +3 Query: 153 SVAIVICNKYLMSTLK--FYFATTLTSWHLLVT--FCTLHIAQRLRFFEAKPIDAQTVIS 320 S+ + + NK++ S K F F L+S +LV F L I R+ K + + Sbjct: 64 SLLLSMMNKWIFSESKMDFQFPLFLSSCQMLVQMGFAKLTILAFPRYQPNKKDNFSWLEY 123 Query: 321 F------GFLNGISIGLLNLCLGFNSVGFYQMTKLAIIPFTMLLETIFLSKKFSQSIKAS 482 F + G+ IGL N L ++ FY M + +I+ F IF + F + Sbjct: 124 FYRAGICALVTGLDIGLSNASLETITLSFYTMCRSSILIFVFFFSVIFRIEMFDWILLCI 183 Query: 483 LMVLLLGVGIASVTDLQLNLLGSIIAV 563 +V+ GV + T+ Q L G ++ + Sbjct: 184 TLVISAGVVLMVATETQFVLSGFLLVM 210
>S35C2_MOUSE (Q8VCX2) Solute carrier family 35 member C2 (Ovarian cancer| overexpressed gene 1 protein) Length = 364 Score = 40.0 bits (92), Expect = 0.005 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 10/142 (7%) Frame = +3 Query: 153 SVAIVICNKYLMSTLKFYFATTLTSWHLLVTFCTLHIAQRLRFFEAKPIDAQTVISF--- 323 S+ I NK+L T F+F +T HL V F +++ L + A+ V+S+ Sbjct: 28 SIGITFYNKWL--TKSFHFPLFMTMLHLAVIFLFSALSRAL--VQCSSHKARVVLSWTDY 83 Query: 324 -------GFLNGISIGLLNLCLGFNSVGFYQMTKLAIIPFTMLLETIFLSKKFSQSIKAS 482 + +GL N + +V Y MTK + + F ++ IF ++ ++ Sbjct: 84 LRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLV 143 Query: 483 LMVLLLGVGIASVTDLQLNLLG 548 ++++ G+ + + Q N+ G Sbjct: 144 VLLIAGGLFMFTYKSTQFNVEG 165
>S35C2_HUMAN (Q9NQQ7) Solute carrier family 35 member C2 (Ovarian cancer| overexpressed gene 1 protein) Length = 365 Score = 39.7 bits (91), Expect = 0.007 Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 10/142 (7%) Frame = +3 Query: 153 SVAIVICNKYLMSTLKFYFATTLTSWHLLVTFCTLHIAQRLRFFEAKPIDAQTVISFG-- 326 S+ I NK+L T F+F +T HL V F +++ L + A+ V+S+ Sbjct: 28 SIGITFYNKWL--TKSFHFPLFMTMLHLAVIFLFSALSRAL--VQCSSHRARVVLSWADY 83 Query: 327 --------FLNGISIGLLNLCLGFNSVGFYQMTKLAIIPFTMLLETIFLSKKFSQSIKAS 482 + +GL N + +V Y MTK + + F ++ IF ++ ++ Sbjct: 84 LRRVAPTALATALDVGLSNWSFLYVTVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLV 143 Query: 483 LMVLLLGVGIASVTDLQLNLLG 548 ++++ G+ + + Q N+ G Sbjct: 144 VLLIAGGLFMFTYKSTQFNVEG 165
>YAGC_SCHPO (Q09875) Hypothetical protein C12G12.12 in chromosome I| Length = 324 Score = 36.2 bits (82), Expect = 0.072 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Frame = +3 Query: 351 LLNLCLGFNSVGFYQMTKLAIIPFTMLLETIFLSKKFSQSIKASLMVLLLGVGI----AS 518 L+N+ L + S YQMT+ ++I F L T L + Q SL ++LGV I S Sbjct: 91 LMNVGLLYTSASIYQMTRGSLIIFVALFATTLLKRTIGQLQWLSLSFVVLGVAIVGYSGS 150 Query: 519 VTDLQLNLLGSIIAVL 566 + + N + I AVL Sbjct: 151 SSSIGSNPILGITAVL 166
>FUCT1_HUMAN (Q96A29) GDP-fucose transporter 1 (Solute carrier family 35 member| C1) Length = 364 Score = 34.7 bits (78), Expect = 0.21 Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 15/171 (8%) Frame = +3 Query: 120 VAGALGLSVTSSVAIVICNKYLMSTLKFYFATTL--TSWHLLVTFCTLHIAQRLRF---- 281 +A + L +S+++V NKYL+ + T + T + LVT L Sbjct: 41 IALVVSLYWVTSISMVFLNKYLLDSPSLRLDTPIFVTFYQCLVTTLLCKGLSALAACCPG 100 Query: 282 ---FEAKPIDAQTVISFGFLNGISIGLL---NLCLGFNSVGFYQMTKLAIIPFTMLLETI 443 F + +D + S L+ + IG++ NLCL + V FY + + F +LL + Sbjct: 101 AVDFPSLRLDLRVARSVLPLSVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVFNVLLSYL 160 Query: 444 FLSKKFSQSIKASLMVLLLGVGIA---SVTDLQLNLLGSIIAVLTIAATCV 587 L + S + +++ G + + L+ LG++ VL A+ CV Sbjct: 161 LLKQTTSFYALLTCGIIIGGFWLGVDQEGAEGTLSWLGTVFGVL--ASLCV 209
>YMD8_YEAST (Q03697) Hypothetical 49.6 kDa protein in CAT2-AMD1 intergenic| region Length = 442 Score = 34.3 bits (77), Expect = 0.27 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 9/90 (10%) Frame = +3 Query: 345 IGLLNLCLGFNSVGFYQMTKLAIIPFTMLLETIFLSKKFSQSIKASLMVLLLGVGI---- 512 IGL N+ + + Y + K + I F +L IF +KF + S++++ +GV + Sbjct: 95 IGLSNVSFQYVPLTIYTIIKSSSIAFVLLFGCIFKLEKFHWKLALSVIIMFVGVALMVFK 154 Query: 513 -----ASVTDLQLNLLGSIIAVLTIAATCV 587 ++ D L + GS L +A++C+ Sbjct: 155 PSDSTSTKNDQALVIFGSF---LVLASSCL 181
>BPAEA_HUMAN (O94833) Bullous pemphigoid antigen 1, isoforms 6/9/10| (Trabeculin-beta) (Bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 5171 Score = 33.9 bits (76), Expect = 0.36 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Frame = -1 Query: 497 EEDHEGSFNALAELLAQKDG-LQEHGEWYNGQLGHLVEAN*VEAKAKVEEANGDPVEKPK 321 ++D +GS ALAE++ + L+E+GE + + L+E EAK K E+ N + K Sbjct: 1278 QKDMQGSAQALAEVVKNTENFLKENGEKLSQEDKALIEQKLNEAKIKCEQLNLKAEQSKK 1337 Query: 320 GDDSLRVNWLRLEEAQTLRYVKRAE 246 D + ++ EE + + VK+ E Sbjct: 1338 ELDKVVTTAIK-EETEKVAAVKQLE 1361
>SP2E_BACSU (P37475) Stage II sporulation protein E (EC 3.1.3.16)| Length = 827 Score = 33.9 bits (76), Expect = 0.36 Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 10/100 (10%) Frame = +3 Query: 312 VISFGFLNGISIG-----LLNLCLGFNSVG-FYQMTKLAIIPFTMLLETIFLSKKFSQS- 470 V+SF F+ G SIG + L LG ++G YQM+ LA F+ LL + K + + Sbjct: 227 VLSFSFIGGASIGCTVGVVTGLILGLANIGNLYQMSLLA---FSGLLGGLLKEGKKAGAA 283 Query: 471 ---IKASLMVLLLGVGIASVTDLQLNLLGSIIAVLTIAAT 581 I SL++ L G G A L L S+IAV T Sbjct: 284 IGLIVGSLLISLYGEGSAG---LMTTLYESLIAVCLFLLT 320
>YOL7_CAEEL (Q02334) Hypothetical protein ZK370.7 in chromosome III| Length = 355 Score = 32.3 bits (72), Expect = 1.0 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 8/89 (8%) Frame = +3 Query: 345 IGLLNLCLGFNSVGFYQMTKLAIIPFTMLLETIFLSKKFSQSIKASLMVLLLGVGIASVT 524 +GL NL G YQ+T + T +FL +KFS ++ +L+ GV + Sbjct: 139 VGLSNL-----DAGLYQVTTQLKVVSTAFFMMLFLGRKFSTRRWMAITLLMFGVAFVQMN 193 Query: 525 DLQLNLLGS--------IIAVLTIAATCV 587 ++ + + I+ + + ATCV Sbjct: 194 NVSASEANTKRETAENYIVGLSAVLATCV 222
>RAD5_NEUCR (Q7S1P9) DNA repair protein rad-5 (EC 3.6.1.-)| Length = 1222 Score = 32.3 bits (72), Expect = 1.0 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = -1 Query: 356 EEANGDPV--EKPKGDDSLRVNWLRLEEAQTLRYVKRAEGDQQVPAC-QCRREVELKGAH 186 E N P+ E+P D ++ W + L Y+K +VP C QCR + ++ Sbjct: 956 EAVNECPICAEEPMIDQAVTGCWHSACKKCLLDYIKHQTDRNEVPRCFQCREHINIRDIF 1015 Query: 185 EVLVADDN 162 EV+ DD+ Sbjct: 1016 EVIRHDDD 1023
>ATP6_CANPA (Q03671) ATP synthase a chain precursor (EC 3.6.3.14) (ATPase| protein 6) (ATP synthase subunit 6) Length = 246 Score = 31.6 bits (70), Expect = 1.8 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 14/111 (12%) Frame = +3 Query: 297 IDAQTVISFGFLNGISIGLLNLCLGFNSVGFYQM-----TKLAIIPFTMLLETI-FLSKK 458 I AQ V F + IG + L L + GF+ + T LA++P +L+E + + S+ Sbjct: 108 ISAQLVAVVSFSLTLWIGNVVLGLYLHGWGFFALFVPSGTPLALVPVLVLIEALSYASRA 167 Query: 459 FSQSIK-------ASLMVLLLGVGIASVTDLQ-LNLLGSIIAVLTIAATCV 587 S ++ L++L+LG I S+ L + II +L + A + Sbjct: 168 ISLGLRLGANILSGHLLMLILGSLIISLMSSSFLGFVSGIIPILAVVAITI 218
>MDTL_SALPA (Q5PKV6) Multidrug resistance protein mdtL| Length = 395 Score = 31.6 bits (70), Expect = 1.8 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Frame = +3 Query: 297 IDAQTVISFGFLNGISI-GLLNLCLGFNSVGFYQMTKLAIIPFTMLLETIFLSKKFSQSI 473 + A +S N +++ GL+ +C GF SVGF A+ PF++ + +Q Sbjct: 281 LTAGVTLSLAHTNTVTLFGLMLICAGF-SVGFGVAMSQALGPFSLRAGVASSTLGIAQVC 339 Query: 474 KASLMVLLLGV-GIASVTDLQLNLLG-SIIAVLTI 572 +SL + L + GI+++ L L+G SI+++L I Sbjct: 340 GSSLWIWLAAILGISAMNMLIGILIGCSIVSILLI 374
>CLPB_AQUAE (O67588) Chaperone clpB| Length = 1006 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/87 (26%), Positives = 46/87 (52%) Frame = -1 Query: 497 EEDHEGSFNALAELLAQKDGLQEHGEWYNGQLGHLVEAN*VEAKAKVEEANGDPVEKPKG 318 E + +G + A+L +K L++ + G++G VEA E K K+EE + E + Sbjct: 561 EANLKGDYEKEAQLKIEKAKLEKEKQELLGKVGG-VEAKIAELKKKIEELDEKIKEAAEK 619 Query: 317 DDSLRVNWLRLEEAQTLRYVKRAEGDQ 237 D + L++E+A+ + +K+ E ++ Sbjct: 620 GDYEKEAELKIEKAKLEKELKKLEQEK 646
>TLCB_RICPR (Q9ZDF2) ADP,ATP carrier protein 2 (ADP/ATP translocase 2)| Length = 507 Score = 31.2 bits (69), Expect = 2.3 Identities = 19/65 (29%), Positives = 34/65 (52%) Frame = +3 Query: 390 YQMTKLAIIPFTMLLETIFLSKKFSQSIKASLMVLLLGVGIASVTDLQLNLLGSIIAVLT 569 Y++TK IP T+L+ I L++ +SIK S +V L+ + S L + ++ V+ Sbjct: 29 YELTKF--IPMTLLMFFILLNQNLVRSIKDSFVVTLISSEVLSFIKLWGEMPMGVLFVIL 86 Query: 570 IAATC 584 + C Sbjct: 87 YSKLC 91
>O51F1_HUMAN (Q8NH61) Olfactory receptor 51F2| Length = 330 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 162 IVICNKYLMSTLKFYFATTLTSWHLLVTFCTLHIAQRLRFFEAKPIDAQTVIS-FGFLNG 338 +V+C + L + +YF + L++ L ++ CTL + +FEA+ I+ I+ FL+G Sbjct: 50 VVLCERSLHKPM-YYFLSMLSATDLSLSLCTLSTTLGVFWFEAREINLNACIAQMFFLHG 108 Query: 339 IS 344 + Sbjct: 109 FT 110
>UBF1A_XENLA (P25979) Nucleolar transcription factor 1-A (Upstream binding| factor 1-A) (UBF-1-A) (xUBF-1) Length = 677 Score = 30.4 bits (67), Expect = 4.0 Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Frame = -1 Query: 569 SEHCDDRAKEIELEIGDRCDANPQEEDHEGSFNALAE--LLAQKDGLQEHGEWYNGQLGH 396 ++ C+ R K+ E+E+ ++ P+EE LAE ++ + G Q + + Sbjct: 344 NKKCEQRKKDYEVELMRFLESLPEEEQQR----VLAEEKMVRSRSG-QADKKKAADERAK 398 Query: 395 LVEAN*VEAKAKVEEANGDPVEKPKGD-----DSLRVNWLRLEEAQTLRYVKRAEGDQQ 234 L E + + GD + + K D S+ WL +E+ + + ++K+A DQ+ Sbjct: 399 LPETPKTAEEIWQQSVIGDYLARFKNDRAKALKSMEGTWLNMEKKEKIMWIKKAAEDQK 457
>SPO15_SCHPO (Q10411) Sporulation-specific protein 15| Length = 1957 Score = 30.4 bits (67), Expect = 4.0 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = -1 Query: 362 KVEEANGDPVEKPKGDDSLRVNWLRLEEAQTLRYVKRAEGDQQVPACQCRREVE-LKGAH 186 K+EE+N ++K + DSL N L+E LR + A ++ A R ++ LKG H Sbjct: 669 KLEESNKSLIKKQEDVDSLEKNIQTLKE--DLRKSEEALRFSKLEAKNLREVIDNLKGKH 726 Query: 185 EVLVADDN 162 E L A N Sbjct: 727 ETLEAQRN 734
>SYY_ANADE (Q2IPT7) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 420 Score = 29.6 bits (65), Expect = 6.7 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 521 DRCDANPQEEDHEGSFNALAELLAQKDGLQEHG 423 +RC+ D G+ A AEL+++KDG HG Sbjct: 182 ERCELQMGGSDQWGNITAGAELVSRKDGASVHG 214
>HSK1_SCHPO (P50582) Cell cycle serine/threonine-protein kinase hsk1 (EC| 2.7.11.1) (Minichromosome maintenance protein kinase) (Cdc7-related kinase) Length = 507 Score = 29.6 bits (65), Expect = 6.7 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Frame = -1 Query: 257 KRAEGDQQVPACQCRREVELKGAHEVLVADDN--GY*RRD----REAQRAGDAHLGAPAV 96 +R +G QQ +C+C + AH+ +A + GY + D + A RAG AP V Sbjct: 240 ERYDGRQQSHSCRCTNSNAAELAHDFSIAQETSLGYIKNDTRPSKRANRAGTRGFRAPEV 299
>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) (Androgen r Length = 2696 Score = 29.6 bits (65), Expect = 6.7 Identities = 18/61 (29%), Positives = 33/61 (54%) Frame = -2 Query: 388 KPTELKPRQRLRRPMEIPLRNPKEMTVCASIGFASKKRRRCAM*SVQKVTSKCQLVSVVA 209 +P ++RLR+P + L +E FA KK+++ V KV+S+C+ S++A Sbjct: 1264 EPAVRSEKKRLRKPSKWLLEYTEEYDQI----FAPKKKQKKVQEQVHKVSSRCEEESLLA 1319 Query: 208 K 206 + Sbjct: 1320 R 1320
>NFM_CHICK (P16053) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) Length = 857 Score = 29.6 bits (65), Expect = 6.7 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 7/91 (7%) Frame = -1 Query: 572 DSEHCDDRAKEIELE---IGDRCDANPQEEDHEGSFNALAELLAQKDGLQEHG----EWY 414 + E +++A+E +E + ++ EE+ + A E A+ D +E G E Sbjct: 482 EEEQEEEKAEEEAVEEEAVSEKAAEQAAEEEEKEEEEAEEEEAAKSDAAEEGGSKKEEIE 541 Query: 413 NGQLGHLVEAN*VEAKAKVEEANGDPVEKPK 321 + G E EAK K EEA G VEK K Sbjct: 542 EKEEGEEAEEEEAEAKGKAEEA-GAKVEKVK 571
>ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)| Length = 1687 Score = 29.3 bits (64), Expect = 8.8 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -2 Query: 382 TELKPRQRLRRPMEIPLRNPKEMTVCASIGFASKKRR 272 T L+ Q+ R P P R P+ C GF K+ R Sbjct: 1148 TALRLHQKRRHPTAAPARGPRPHLQCGDCGFTCKQSR 1184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,155,459 Number of Sequences: 219361 Number of extensions: 1113220 Number of successful extensions: 3910 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3815 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3904 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
