ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart10c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC ... 132 1e-30
2YB4E_SCHPO (O14359) Hypothetical protein C30D10.14 in chromosome II 68 2e-11
3YAE9_YEAST (P39721) Protein YAL049C 67 4e-11
4DLHH_AQUAE (O67802) Putative carboxymethylenebutenolidase (EC 3.... 40 0.005
5DLHH_METEX (P71505) Putative carboxymethylenebutenolidase precur... 34 0.27
6DLHH_AZOBR (Q43914) Putative carboxymethylenebutenolidase (EC 3.... 32 1.4
7SYV_BRUSU (Q8G0Y3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 32 1.4
8SYV_BRUME (Q8YGX8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 32 1.4
9SYV_RHILO (Q98LB1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 31 3.0
10PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM ... 31 3.0
11CEND3_HUMAN (Q8WWN8) Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GA... 30 6.7
12SMC5_SCHPO (O13710) Structural maintenance of chromosome 5 (DNA ... 29 8.8
13SALA_BACSU (P50863) Protein mrp homolog salA 29 8.8

>E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-)|
          Length = 303

 Score =  132 bits (331), Expect = 1e-30
 Identities = 76/149 (51%), Positives = 98/149 (65%), Gaps = 5/149 (3%)
 Frame = +1

Query: 151 ATPQCCADPPTLNPAGGE----GKVV-DSFGGITAYVSGARESKAAVVLISDVFGFEAPN 315
           A  QC  +PP  +  G +    G+VV D  GG+ AYVSGA  S  AVVL SDVFG+EAP 
Sbjct: 25  AHSQCLDNPPDRSIHGRQLAEAGEVVHDLPGGLRAYVSGAASSSRAVVLASDVFGYEAPL 84

Query: 316 LRKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKEHAPGKAFEEAKPVIAALKE 495
           LR+I DKVA +GY VVVPDFL GD Y+ +   +    WL+ H+P KA E+AKP+ AALK+
Sbjct: 85  LRQIVDKVAKAGYFVVVPDFLKGD-YLDDK--KNFTEWLEAHSPVKAAEDAKPLFAALKK 141

Query: 496 QGVSTVGAAGYCWGAKVVAELAKANEIHA 582
           +G S V   GYCWG K+  E+ K +++ A
Sbjct: 142 EGKS-VAVGGYCWGGKLSVEVGKTSDVKA 169



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>YB4E_SCHPO (O14359) Hypothetical protein C30D10.14 in chromosome II|
          Length = 249

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
 Frame = +1

Query: 202 EGKVVDSFGGITAYVSGARESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVPDFLH 381
           +GK +++FGG+T YV G+  +   ++   D+FG  +  +++ ADK+A  G+ V +PDFL 
Sbjct: 21  KGKEIENFGGLTTYVVGSTSNTRVLIGFMDIFGL-SDQIKEGADKLADDGFTVYLPDFLE 79

Query: 382 GDPY--------VPENADRPIQVWLKEHAPGKAFEEAKPVIAALK-EQGVS-TVGAAGYC 531
           G P          PE+       +    +P   + +   V+ A++   G + T+G  G+C
Sbjct: 80  GKPLPVTALPPKTPEDQKLCNDFFSTRISPNLHWPKLAKVVEAVRANHGPNVTIGTYGFC 139

Query: 532 WGAKVV 549
           WGAKV+
Sbjct: 140 WGAKVL 145



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>YAE9_YEAST (P39721) Protein YAL049C|
          Length = 246

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
 Frame = +1

Query: 229 GITAYVSGARESKAAVVLI-SDVFGFEAPNLRKIADKVASSGYLVVVPDFLHGDPYVPEN 405
           G+  Y +G+   K  V++I +DV+G +  N+   ADK AS+GY+V VPD L GD     +
Sbjct: 29  GLDTYAAGSTSPKEKVIVILTDVYGNKFNNVLLTADKFASAGYMVFVPDILFGDAI---S 85

Query: 406 ADRPI--QVWLKEHAPGKAFEEAKPVIAALK-EQGVSTVGAAGYCWGAKVVAE 555
           +D+PI    W + H+P    +     +  LK E     +G  GYC+GAK   +
Sbjct: 86  SDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPKFIGVVGYCFGAKFAVQ 138



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>DLHH_AQUAE (O67802) Putative carboxymethylenebutenolidase (EC 3.1.1.45)|
           (Dienelactone hydrolase) (DLH)
          Length = 231

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
 Frame = +1

Query: 232 ITAYVSGARESKAAVVLISDVFGFEAP--NLRKIADKVASSGYLVVVPDFLHGDPYV--P 399
           +  Y++  + +  AV++  + +G E+P  N+++I DK+A  G++   PDF  G  Y   P
Sbjct: 14  VRGYIATPKWAGPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQ-YADNP 72

Query: 400 ENADRPIQVWLKEHAP--GKAFEEAKPVIAALKEQGVSTVGAAGYCWGAKVVAELA 561
           ++A + +    ++      + F+ +   +   +      VG  G+C G  +    A
Sbjct: 73  DDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFA 128



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>DLHH_METEX (P71505) Putative carboxymethylenebutenolidase precursor (EC|
           3.1.1.45) (Dienelactone hydrolase) (DLH)
          Length = 291

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
 Frame = +1

Query: 199 GEGKVVDSFGGITAYVSGARESKA--AVVLISDVFGFEAPNLRKIADKVASSGYLVVVPD 372
           GE K+    G I AY +   E      ++++ ++FG    +++ +  ++A  GY  + P+
Sbjct: 54  GEVKIPMQDGVIPAYRAMPAEGGPFPTILVVQEIFGVHE-HIKDVCRRLAKLGYFALAPE 112

Query: 373 FL--HGDPYVPENADRPIQVWLKEHAPGKAFEEAKPVIAALKEQG---VSTVGAAGYCWG 537
                GD     +  + +   + +    +   +    +A  K  G    + +G  G+CWG
Sbjct: 113 LYARQGDVSTLTDIQQIVSEVVSKVPDDQVMSDLDAAVAFAKGTGKADTARLGITGFCWG 172

Query: 538 AKV 546
            ++
Sbjct: 173 GRI 175



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>DLHH_AZOBR (Q43914) Putative carboxymethylenebutenolidase (EC 3.1.1.45)|
           (Dienelactone hydrolase) (DLH)
          Length = 231

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +1

Query: 190 PAGGEGKVVDSFGGITAYVSGARESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVP 369
           PAG +G    SF    A  +G   +   VV I ++FG     +R + D  A+ G+L V P
Sbjct: 7   PAGDDG----SFSAYVAKPAGGGPAPGLVV-IQEIFGVNQV-MRDLCDAFAAQGWLAVCP 60

Query: 370 D-FLHGDPYVPENADRPIQVWLKEHAPGKAFEEAK 471
           D F   +P V +  D+  + W +  A     ++ K
Sbjct: 61  DLFWRQEPGV-QITDKTQEEWNRAFALMNGMDQDK 94



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>SYV_BRUSU (Q8G0Y3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 910

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 23/79 (29%), Positives = 40/79 (50%)
 Frame = +1

Query: 259 ESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKE 438
           E KA +V +  +  F A   ++I + +   GYL  + D  H  P+  +    PI+ +L +
Sbjct: 328 ELKALIVELDGMDRFAAR--KRIVELMDERGYLEKIDDHTHAVPH-GDRGGVPIEPYLTD 384

Query: 439 HAPGKAFEEAKPVIAALKE 495
                A E AKP +AA+++
Sbjct: 385 QWYVNAGELAKPAMAAVRD 403



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>SYV_BRUME (Q8YGX8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 910

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 23/79 (29%), Positives = 40/79 (50%)
 Frame = +1

Query: 259 ESKAAVVLISDVFGFEAPNLRKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKE 438
           E KA +V +  +  F A   ++I + +   GYL  + D  H  P+  +    PI+ +L +
Sbjct: 328 ELKALIVELDGMDRFAAR--KRIVELMDERGYLEKIDDHTHAVPH-GDRGGVPIEPYLTD 384

Query: 439 HAPGKAFEEAKPVIAALKE 495
                A E AKP +AA+++
Sbjct: 385 QWYVNAGELAKPAMAAVRD 403



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>SYV_RHILO (Q98LB1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 927

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 319 RKIADKVASSGYLVVVPDFLHGDPYVPENADRPIQVWLKEHAPGKAFEEAKPVIAALKE 495
           +KI + +   G+L  V    H  P+  +    PI+ +L E     A E AKP IA+++E
Sbjct: 345 KKIVELMEEGGFLEKVEPHRHAVPH-GDRGGVPIEPFLTEQWYANAAELAKPAIASVRE 402



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>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
            membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 22/70 (31%), Positives = 27/70 (38%)
 Frame = +1

Query: 142  GRMATPQCCADPPTLNPAGGEGKVVDSFGGITAYVSGARESKAAVVLISDVFGFEAPNLR 321
            G  AT      P +  PA G    V SFG  T+   GA    A+    S VFG   P+  
Sbjct: 1018 GLKATASAFGAPASSQPAFGGSTAVFSFGAATSSGFGATTQTASSGSSSSVFGSTTPSPF 1077

Query: 322  KIADKVASSG 351
                  A +G
Sbjct: 1078 TFGGSAAPAG 1087



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>CEND3_HUMAN (Q8WWN8) Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin repeat|
            and pleckstrin homology domain-containing protein 3)
          Length = 1544

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 93   SYPSQPQSPGTSGLGTRQDGYP 158
            S PS PQSP  +GL T+  G+P
Sbjct: 1507 SQPSSPQSPSPTGLPTQTPGFP 1528



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>SMC5_SCHPO (O13710) Structural maintenance of chromosome 5 (DNA repair protein|
           spr18) (SMC partner of rad18)
          Length = 1065

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 436 PLTTLVLVCRRFQVHMDPHVRNLAPQLNIQTKRLYRLSSSDSALQT 299
           P   LV +C   ++H  P  +   P  ++     +RL++ D  L+T
Sbjct: 541 PEVVLVALCHMLKIHQIPIAKRELPPASVNALNNFRLANGDPVLKT 586



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>SALA_BACSU (P50863) Protein mrp homolog salA|
          Length = 352

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 175 PPTLNPAGGEGKVVDSFGGITAYVSGARESKAAVVLISDVFGFEAPNLRKIADKVASSG 351
           P  L  A G+G V  S   +   +S AR  K   ++ +D++GF  P++  I  +    G
Sbjct: 106 PVFLAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMGITVRPTIEG 164


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,641,376
Number of Sequences: 219361
Number of extensions: 1119539
Number of successful extensions: 3886
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3881
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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