ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart10c05 |
|---|---|
| Clone Library Name | barley_pub |
>FDH_HORVU (Q9ZRI8) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 377 Score = 259 bits (663), Expect = 2e-69 Identities = 129/136 (94%), Positives = 131/136 (96%) Frame = +3 Query: 96 MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADENPNFVGCVEGALGIRD 275 MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYAD+NPNFVGCVEGALGIRD Sbjct: 1 MAAMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRD 60 Query: 276 WLESKGHHYIVTDD*EGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAG 455 WLESKGHHYIVTDD EG NSELEKHIEDMHVLITTPFHPAYVTAE+IKKAK ELLLTAG Sbjct: 61 WLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAG 120 Query: 456 IGSDHIDLPAAAAARL 503 IGSDHIDLPAAAAA L Sbjct: 121 IGSDHIDLPAAAAAGL 136
>FDH1_ORYSA (Q9SXP2) Formate dehydrogenase 1, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase 1) (FDH 1) Length = 376 Score = 248 bits (633), Expect = 7e-66 Identities = 122/134 (91%), Positives = 128/134 (95%) Frame = +3 Query: 102 AMWRAAARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADENPNFVGCVEGALGIRDWL 281 AMWRAAA L+ RA+GSRAAHTSAGSKKIVGVFY+ GEYAD+NPNFVGCVEGALGIR+WL Sbjct: 2 AMWRAAAGHLLGRALGSRAAHTSAGSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREWL 61 Query: 282 ESKGHHYIVTDD*EGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIG 461 ESKGHHYIVTDD EGLNSELEKHIEDMHVLITTPFHPAYV+AERIKKAKNLELLLTAGIG Sbjct: 62 ESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIG 121 Query: 462 SDHIDLPAAAAARL 503 SDHIDLPAAAAA L Sbjct: 122 SDHIDLPAAAAAGL 135
>FDH2_ORYSA (Q67U69) Formate dehydrogenase 2, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase 2) (FDH 2) Length = 378 Score = 225 bits (573), Expect = 6e-59 Identities = 112/136 (82%), Positives = 121/136 (88%), Gaps = 2/136 (1%) Frame = +3 Query: 102 AMWRA--AARQLVDRAVGSRAAHTSAGSKKIVGVFYQAGEYADENPNFVGCVEGALGIRD 275 AMWRA AA QL+ RA+ S AA TSAGSKK+VGVFY+ GEYAD+NPNFVGCV+ ALGIR Sbjct: 2 AMWRAPSAAGQLLGRALASTAAQTSAGSKKVVGVFYKGGEYADKNPNFVGCVDSALGIRG 61 Query: 276 WLESKGHHYIVTDD*EGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAG 455 WLESKGH YIVTDD EG+N ELEKHIED HVLITTPFHPAY+TAERIKKAKNLELLLTAG Sbjct: 62 WLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAG 121 Query: 456 IGSDHIDLPAAAAARL 503 +GSDHIDLPAAAAA L Sbjct: 122 VGSDHIDLPAAAAAGL 137
>FDH_ARATH (Q9S7E4) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 384 Score = 187 bits (474), Expect = 2e-47 Identities = 92/113 (81%), Positives = 101/113 (89%) Frame = +3 Query: 165 TSAGSKKIVGVFYQAGEYADENPNFVGCVEGALGIRDWLESKGHHYIVTDD*EGLNSELE 344 +S SKKIVGVFY+A EYA +NPNF+GCVE ALGIRDWLES+GH YIVTDD EG + ELE Sbjct: 31 SSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELE 90 Query: 345 KHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAARL 503 KHI D+HVLI+TPFHPAYVTAERIKKAKNL+LLLTAGIGSDHIDL AAAAA L Sbjct: 91 KHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGL 143
>FDH_SOLTU (Q07511) Formate dehydrogenase, mitochondrial precursor (EC| 1.2.1.2) (NAD-dependent formate dehydrogenase) (FDH) Length = 381 Score = 186 bits (472), Expect = 3e-47 Identities = 95/140 (67%), Positives = 111/140 (79%), Gaps = 2/140 (1%) Frame = +3 Query: 90 VSMAAMWRAAARQLVDRA--VGSRAAHTSAGSKKIVGVFYQAGEYADENPNFVGCVEGAL 263 ++M+ + AAR + + V +R S G KKIVGVFY+A EYA+ NPNF+GC E AL Sbjct: 1 MAMSRVASTAARAITSPSSLVFTRELQASPGPKKIVGVFYKANEYAEMNPNFLGCAENAL 60 Query: 264 GIRDWLESKGHHYIVTDD*EGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELL 443 GIR+WLESKGH YIVT D EG + ELEKHI D+HVLI+TPFHPAYVTAERIKKAKNL+LL Sbjct: 61 GIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLL 120 Query: 444 LTAGIGSDHIDLPAAAAARL 503 LTAGIGSDH+DL AAAAA L Sbjct: 121 LTAGIGSDHVDLKAAAAAGL 140
>FDH_PICAN (P33677) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 361 Score = 130 bits (326), Expect = 3e-30 Identities = 61/99 (61%), Positives = 74/99 (74%) Frame = +3 Query: 183 KIVGVFYQAGEYADENPNFVGCVEGALGIRDWLESKGHHYIVTDD*EGLNSELEKHIEDM 362 K+V V Y AG++A + GC E ALGIRDWLE +GH +VT D EG NS LEK+I D Sbjct: 1 KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDA 60 Query: 363 HVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDL 479 V+I+TPFHPAY+T ERI KAK L+LL+ AG+GSDHIDL Sbjct: 61 DVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSDHIDL 99
>FDH_NEUCR (Q07103) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 375 Score = 118 bits (295), Expect = 1e-26 Identities = 51/102 (50%), Positives = 73/102 (71%) Frame = +3 Query: 183 KIVGVFYQAGEYADENPNFVGCVEGALGIRDWLESKGHHYIVTDD*EGLNSELEKHIEDM 362 K++ V Y G++ +E P +G ++ LG+R WLE +GH + T D +G NS +K +ED Sbjct: 3 KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDA 62 Query: 363 HVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAA 488 ++ITTPFHP Y+TAER+ +AK L+L +TAGIGSDH+DL AA Sbjct: 63 EIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSDHVDLNAA 104
>FDH_EMENI (Q03134) Probable formate dehydrogenase (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase) (FDH) Length = 377 Score = 117 bits (293), Expect = 2e-26 Identities = 53/98 (54%), Positives = 68/98 (69%) Frame = +3 Query: 195 VFYQAGEYADENPNFVGCVEGALGIRDWLESKGHHYIVTDD*EGLNSELEKHIEDMHVLI 374 V Y G +A + P +G E LGIR W+E +GH + T D +G NS +K + D V+I Sbjct: 2 VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVII 61 Query: 375 TTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAA 488 TTPFHP Y+TAER+ KAKNL+L +TAGIGSDH+DL AA Sbjct: 62 TTPFHPGYLTAERLAKAKNLKLAVTAGIGSDHVDLDAA 99
>FDH2_YEAST (Q08987) Formate dehydrogenase 2 (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase 2) Length = 376 Score = 98.6 bits (244), Expect = 8e-21 Identities = 44/103 (42%), Positives = 73/103 (70%), Gaps = 1/103 (0%) Frame = +3 Query: 183 KIVGVFYQAGEYADENPNFVGCVEGALGIRDWLESKGHHYIVTDD*EGL-NSELEKHIED 359 K++ V Y+ G++A+E +GC+E LGIR+++E +G+ + T D + S +++ ++D Sbjct: 5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKD 64 Query: 360 MHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAA 488 ++ITTPF PAY++ RI +A NL+L +TAG+GSDH+DL AA Sbjct: 65 AEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAA 107
>FDH1_YEAST (Q08911) Formate dehydrogenase 1 (EC 1.2.1.2) (NAD-dependent| formate dehydrogenase 1) Length = 376 Score = 98.6 bits (244), Expect = 8e-21 Identities = 44/103 (42%), Positives = 73/103 (70%), Gaps = 1/103 (0%) Frame = +3 Query: 183 KIVGVFYQAGEYADENPNFVGCVEGALGIRDWLESKGHHYIVTDD*EGL-NSELEKHIED 359 K++ V Y+ G++A+E +GC+E LGIR+++E +G+ + T D + S +++ ++D Sbjct: 5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKD 64 Query: 360 MHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAA 488 ++ITTPF PAY++ RI +A NL+L +TAG+GSDH+DL AA Sbjct: 65 AEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAA 107
>FDH_PSESR (P33160) Formate dehydrogenase (EC 1.2.1.2) (NAD-dependent formate| dehydrogenase) (FDH) Length = 400 Score = 96.3 bits (238), Expect = 4e-20 Identities = 47/83 (56%), Positives = 61/83 (73%) Frame = +3 Query: 240 VGCVEGALGIRDWLESKGHHYIVTDD*EGLNSELEKHIEDMHVLITTPFHPAYVTAERIK 419 +G V G LG+R +LES GH +VT D +G +S E+ + D V+I+ PF PAY+T ERI Sbjct: 50 LGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIA 109 Query: 420 KAKNLELLLTAGIGSDHIDLPAA 488 KAKNL+L LTAGIGSDH+DL +A Sbjct: 110 KAKNLKLALTAGIGSDHVDLQSA 132
>SERA_ARCFU (O29445) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 527 Score = 33.1 bits (74), Expect = 0.44 Identities = 16/30 (53%), Positives = 23/30 (76%) Frame = +3 Query: 399 VTAERIKKAKNLELLLTAGIGSDHIDLPAA 488 V AE I+ AKNL+++ AG+G D+ID+ AA Sbjct: 53 VDAEVIQAAKNLKIIGRAGVGVDNIDINAA 82
>AKSF_METJA (Q58991) Threo-isocitrate dehydrogenase [NAD] (EC 1.1.1.-)| Length = 347 Score = 31.2 bits (69), Expect = 1.7 Identities = 38/122 (31%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Frame = +3 Query: 135 DRAVGSRAAHTSAGSKKIVGVFYQAGEYA-DENPNFVGCVEGA--LGIRDWL------ES 287 D A+ R T GS++I+ + EYA N V C+ A L I D L E Sbjct: 144 DTAIAERVI-TRKGSERIIRFAF---EYAIKNNRKKVSCIHKANVLRITDGLFLEVFNEI 199 Query: 288 KGHHYIVTDD*--EGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIG 461 K H+ I DD + L KH E V++TT ++ E L L +A IG Sbjct: 200 KKHYNIEADDYLVDSTAMNLIKHPEKFDVIVTTNMFGDILSDEASALIGGLGLAPSANIG 259 Query: 462 SD 467 D Sbjct: 260 DD 261
>E2AK3_DROME (Q9NIV1) Eukaryotic translation initiation factor 2-alpha kinase| precursor (EC 2.7.11.1) (PRKR-like endoplasmic reticulum kinase) (PERK) (PEK) (DmPEK) Length = 1162 Score = 30.8 bits (68), Expect = 2.2 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 3/100 (3%) Frame = +3 Query: 192 GVFYQAGE---YADENPNFVGCVEGALGIRDWLESKGHHYIVTDD*EGLNSELEKHIEDM 362 G Q GE Y DEN F + L +++ G ++ T D G ++ Sbjct: 436 GAVAQGGELVPYDDEN--FAVAAQSVLNASEFVNGNGFYFYTTGDLNGPQECSTQNNPTD 493 Query: 363 HVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLP 482 IT P P T+E + N + G D ID P Sbjct: 494 LPAITAPTSPTNATSEGTEATGNHSVNDDLGFSLDDIDAP 533
>SERA_RAT (O08651) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH)| Length = 532 Score = 29.3 bits (64), Expect = 6.3 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +3 Query: 336 ELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAA 488 EL ++D LI VTA+ I A+ L+++ AG G D++DL AA Sbjct: 39 ELIAELQDCEGLIVRS--ATKVTADVINAAEKLQVVGRAGTGVDNVDLEAA 87
>SERA_PONPY (Q5R7M2) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH)| Length = 532 Score = 29.3 bits (64), Expect = 6.3 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +3 Query: 336 ELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAA 488 EL ++D LI VTA+ I A+ L+++ AG G D++DL AA Sbjct: 39 ELIAELQDCEGLIVRS--ATKVTADVINAAEKLQVVGRAGTGVDNVDLEAA 87
>SERA_MOUSE (Q61753) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH)| (A10) Length = 532 Score = 29.3 bits (64), Expect = 6.3 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +3 Query: 336 ELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAA 488 EL ++D LI VTA+ I A+ L+++ AG G D++DL AA Sbjct: 39 ELIAELQDCEGLIVRS--ATKVTADVINAAEKLQVVGRAGTGVDNVDLEAA 87
>SERA_MACFA (Q60HD7) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH)| Length = 532 Score = 29.3 bits (64), Expect = 6.3 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +3 Query: 336 ELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAA 488 EL ++D LI VTA+ I A+ L+++ AG G D++DL AA Sbjct: 39 ELIAELQDCEGLIVRS--ATKVTADVINAAEKLQVVGRAGTGVDNVDLEAA 87
>SERA_HUMAN (O43175) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH)| Length = 532 Score = 29.3 bits (64), Expect = 6.3 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +3 Query: 336 ELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAA 488 EL ++D LI VTA+ I A+ L+++ AG G D++DL AA Sbjct: 39 ELIAELQDCEGLIVRS--ATKVTADVINAAEKLQVVGRAGTGVDNVDLEAA 87
>SERA_SYNY3 (P73821) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 554 Score = 29.3 bits (64), Expect = 6.3 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +3 Query: 399 VTAERIKKAKNLELLLTAGIGSDHIDLPAA 488 VT + I+ L+++ AG+G D+ID+PAA Sbjct: 81 VTEKIIQAGSQLKIIGRAGVGVDNIDVPAA 110
>HIS8_XANCP (P58892) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 362 Score = 29.3 bits (64), Expect = 6.3 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +3 Query: 366 VLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAARL 503 V++T P Y R++ A +E+ L G H D+PA A L Sbjct: 102 VVVTPPVFGMYAVCARLQSAPLVEVPLVDGADGLHADVPAIVQAAL 147
>HIS8_XANC8 (Q4UU41) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 362 Score = 29.3 bits (64), Expect = 6.3 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +3 Query: 366 VLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAARL 503 V++T P Y R++ A +E+ L G H D+PA A L Sbjct: 102 VVVTPPVFGMYAVCARLQNAPLVEVPLVDGADGLHADVPAIVQAAL 147
>HIS8_XANAC (P58891) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 363 Score = 29.3 bits (64), Expect = 6.3 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = +3 Query: 366 VLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAARL 503 VL+T P Y R++ A +++ L G H D+PA A L Sbjct: 102 VLVTPPVFGMYAVCARLQNAPLVDVPLVDGPDGFHADIPAIVAMAL 147
>ARCB_HAEIN (P44578) Aerobic respiration control sensor protein arcB homolog| (EC 2.7.13.3) Length = 325 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +3 Query: 294 HHYIVTDD*EGLNSELEKHIEDMHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGS 464 +H+IV D G++ E +KHI +M+ + + + + +KNL L+ G S Sbjct: 269 YHFIVKDTGMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMGRGFNS 325
>SYI_THET8 (P56690) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1043 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -2 Query: 262 RAPSTQPTKLGFSSAYSPAW*NTPTIFLLPADVCAALDP 146 R P +P KLG A W TP + LP +V AA+ P Sbjct: 208 RFPLKEPKKLGLEKASLLIWTTTP--WTLPGNVAAAVHP 244
>SYI_THET2 (Q72JR6) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1043 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -2 Query: 262 RAPSTQPTKLGFSSAYSPAW*NTPTIFLLPADVCAALDP 146 R P +P KLG A W TP + LP +V AA+ P Sbjct: 208 RFPLKEPKKLGLEKASLLIWTTTP--WTLPGNVAAAVHP 244 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,093,192 Number of Sequences: 219361 Number of extensions: 1188234 Number of successful extensions: 3859 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3766 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3854 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
