ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart10c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475899.1| Oryza sativa (japonica cultivar-group), predic... 391 e-105
2dbj|AK102111.1| Oryza sativa (japonica cultivar-group) cDNA clon... 391 e-105
3dbj|AK062090.1| Oryza sativa (japonica cultivar-group) cDNA clon... 391 e-105
4gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome... 96 2e-16
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
6ref|NM_188724.1| Oryza sativa (japonica cultivar-group), predic... 44 0.54
7emb|BX908736.10| Zebrafish DNA sequence from clone CH211-229C8 i... 44 0.54
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
9dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
10dbj|AK098860.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.54
11dbj|AK067756.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.54
12ref|NM_191140.1| Oryza sativa (japonica cultivar-group), predic... 42 2.1
13gb|DQ151606.1| Corylus avellana clone 28 microsatellite CAC-C028... 42 2.1
14gb|AC092691.3| Homo sapiens 3q BAC RP11-768G7 (Roswell Park Canc... 42 2.1
15dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16dbj|AK110766.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
17emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 2.1
18dbj|AB034913.1| Mycobacterium gastri MB19 formaldehyde-fixing op... 42 2.1
19ref|NM_185475.2| Oryza sativa (japonica cultivar-group), mRNA 40 8.4
20gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 8.4
21gb|AC022775.16| Mus musculus chromosome 15, clone RP23-71O17, co... 40 8.4
22ref|XM_421381.1| PREDICTED: Gallus gallus similar to hypothetica... 40 8.4
23gb|AC160550.6| Mus musculus chromosome 15, clone RP23-284G10, co... 40 8.4
24gb|AC164957.2| Mus musculus BAC clone RP23-480L9 from chromosome... 40 8.4
25emb|AL049825.18|HSJ662B22 Human DNA sequence from clone RP4-662B... 40 8.4
26emb|BX927127.9| Zebrafish DNA sequence from clone DKEY-172K9 in ... 40 8.4
27dbj|AK127262.1| Homo sapiens cDNA FLJ45329 fis, clone BRHIP30071... 40 8.4
28emb|CR594443.1| full-length cDNA clone CS0DI037YB13 of Placenta ... 40 8.4
29dbj|AB226660.1| Aspergillus oryzae cDNA, contig sequence: AoEST3522 40 8.4
30dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 8.4
31gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Par... 40 8.4
32gb|AC091899.2| Homo sapiens chromosome 5 clone RP11-158D20, comp... 40 8.4
33ref|XM_932477.1| PREDICTED: Homo sapiens similar to Proprotein c... 40 8.4
34gb|AC026796.5| Homo sapiens chromosome 5 clone CTD-2292M14, comp... 40 8.4
35ref|NM_070625.3| Caenorhabditis elegans Y116A8C.26 (Y116A8C.26) ... 40 8.4
36dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
37gb|AF057710.1|AF057710 Homo sapiens clone ICRFP700K1680Q06 lymph... 40 8.4
38gb|AF057709.1|AF057709 Homo sapiens clone ICRFP700B2221Q06 lymph... 40 8.4
39dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
40dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
41emb|BX640723.1|HSM806796 Homo sapiens mRNA; cDNA DKFZp686B01212 ... 40 8.4
42dbj|AK106449.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.4
43gb|AC013417.4|AC013417 Homo sapiens 12q22-103.4-106.5 BAC RP11-3... 40 8.4
44emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 8.4
45emb|BX323070.7| Zebrafish DNA sequence from clone DKEY-45H7 in l... 40 8.4
46emb|AL117204.1|CEY116A8C Caenorhabditis elegans YAC Y116A8C, com... 40 8.4
47gb|AC005562.1|AC005562 Homo sapiens chromosome 17, clone hRPK.27... 40 8.4
48dbj|AP000936.7| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.4
49dbj|AP000892.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 8.4
50gb|AY746355.1| Phaeodactylum tricornutum delta-6-elongase (elo6)... 40 8.4
51dbj|AK112792.1| Ciona intestinalis cDNA, clone:cilv015p09, full ... 40 8.4
52gb|DQ304632.1| Triticum urartu clone Tel/Sp52R unknown sequence 40 8.4
53emb|AL953842.8| Zebrafish DNA sequence from clone DKEY-33I11, co... 40 8.4
54gb|U73638.1|U73638 Human Chromosome 11 Cosmid cSRL16b6, complete... 40 8.4
55emb|AL672231.7| Mouse DNA sequence from clone RP23-54C14 on chro... 40 8.4
56dbj|AP005018.1| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.4 
>ref|XM_475899.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1581

 Score =  391 bits (197), Expect = e-105
 Identities = 478/571 (83%), Gaps = 3/571 (0%)
 Strand = Plus / Plus

                                                                       
Query: 40  ccggcgagctggaagccgtgttccgtgcggcggccgacttcgcctcctacccaggagtgc 99
           |||||||| |||||||  || |||| ||||| || || ||||| ||||||||||||| ||
Sbjct: 23  ccggcgagatggaagcgatgctccgggcggcagcggagttcgcgtcctacccaggagcgc 82

                                                                       
Query: 100 atggcgaggacgcagtgaggcagttcctggagcagttccctcttcatgacctgctaggtg 159
           |||| || ||| | |||||||||||||||||||| | |||||| |   | ||| ||||||
Sbjct: 83  atggtgatgacaccgtgaggcagttcctggagcaataccctctgcccaagctgttaggtg 142

                                                                       
Query: 160 cgttgcagagtcagggagccgagcctgagacggttgaaactgttgcagcttgcttggaca 219
           | ||||||||| |||  |  |  |||| || || ||||||| |||| || ||||||||||
Sbjct: 143 cattgcagagtgaggctgatgtacctgggatggatgaaactattgccgcatgcttggaca 202

                                                                       
Query: 220 aagtattttcgtccagatatggagcttcacttctgcccagctatgctgcatttattgaag 279
           |||||||||| || ||||||||||| ||| ||||||| ||||||| |||||||||| |||
Sbjct: 203 aagtattttcttcgagatatggagcatcatttctgccaagctatggtgcatttattcaag 262

                                                                       
Query: 280 ctgggttgctcacaaacctaaacaatatcagacaactggcctgcaaagcggtggtacatc 339
           |||| |||||  |||||   || |||| ||||||||| ||||||||||| ||| ||||||
Sbjct: 263 ctggattgcttgcaaactcgaagaataccagacaactagcctgcaaagctgtgatacatc 322

                                                                       
Query: 340 ttcttgacaaggctgaagatagtgatgttgccgtggacacatttgtacagcacaatctgt 399
           ||||||| ||||||| |||||||| |||||  |||||||||||||| ||||||||||| |
Sbjct: 323 ttcttgataaggctggagatagtgctgttgttgtggacacatttgttcagcacaatctat 382

                                                                       
Query: 400 accctcttctgatcaactgcttgattgagggagacgaagagatctcagcaattgttttgg 459
           | ||||||||||| || || || | ||||||||| || ||||| |||||||||  | |||
Sbjct: 383 atcctcttctgatgaattgtttaactgagggagatgaggagatttcagcaatttctctgg 442

                                                                       
Query: 460 atgccataaagcgtctagcagaaattcctaaagggaccgatatcatatttccaccagatg 519
           ||| |||||| ||| ||||| ||||||||||||| |  || ||||||||||||||| |||
Sbjct: 443 atggcataaaacgtttagcacaaattcctaaaggcattgagatcatatttccaccaaatg 502

                                                                       
Query: 520 ggcaaggat---tgcaactcaacaaagtggcagcccagtcatcctcaatggcacgaattc 576
           | ||||| |   |||||||| ||||||||||||| |||||||| || |||||||||||||
Sbjct: 503 gtcaagggtctgtgcaactccacaaagtggcagctcagtcatcgtccatggcacgaattc 562

                                          
Query: 577 gcattctatctttgatagctaagctctttgc 607
           ||||||||||  |||||||||||||||||||
Sbjct: 563 gcattctatcactgatagctaagctctttgc 593
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>dbj|AK102111.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084F06, full
           insert sequence
          Length = 1907

 Score =  391 bits (197), Expect = e-105
 Identities = 478/571 (83%), Gaps = 3/571 (0%)
 Strand = Plus / Plus

                                                                       
Query: 40  ccggcgagctggaagccgtgttccgtgcggcggccgacttcgcctcctacccaggagtgc 99
           |||||||| |||||||  || |||| ||||| || || ||||| ||||||||||||| ||
Sbjct: 141 ccggcgagatggaagcgatgctccgggcggcagcggagttcgcgtcctacccaggagcgc 200

                                                                       
Query: 100 atggcgaggacgcagtgaggcagttcctggagcagttccctcttcatgacctgctaggtg 159
           |||| || ||| | |||||||||||||||||||| | |||||| |   | ||| ||||||
Sbjct: 201 atggtgatgacaccgtgaggcagttcctggagcaataccctctgcccaagctgttaggtg 260

                                                                       
Query: 160 cgttgcagagtcagggagccgagcctgagacggttgaaactgttgcagcttgcttggaca 219
           | ||||||||| |||  |  |  |||| || || ||||||| |||| || ||||||||||
Sbjct: 261 cattgcagagtgaggctgatgtacctgggatggatgaaactattgccgcatgcttggaca 320

                                                                       
Query: 220 aagtattttcgtccagatatggagcttcacttctgcccagctatgctgcatttattgaag 279
           |||||||||| || ||||||||||| ||| ||||||| ||||||| |||||||||| |||
Sbjct: 321 aagtattttcttcgagatatggagcatcatttctgccaagctatggtgcatttattcaag 380

                                                                       
Query: 280 ctgggttgctcacaaacctaaacaatatcagacaactggcctgcaaagcggtggtacatc 339
           |||| |||||  |||||   || |||| ||||||||| ||||||||||| ||| ||||||
Sbjct: 381 ctggattgcttgcaaactcgaagaataccagacaactagcctgcaaagctgtgatacatc 440

                                                                       
Query: 340 ttcttgacaaggctgaagatagtgatgttgccgtggacacatttgtacagcacaatctgt 399
           ||||||| ||||||| |||||||| |||||  |||||||||||||| ||||||||||| |
Sbjct: 441 ttcttgataaggctggagatagtgctgttgttgtggacacatttgttcagcacaatctat 500

                                                                       
Query: 400 accctcttctgatcaactgcttgattgagggagacgaagagatctcagcaattgttttgg 459
           | ||||||||||| || || || | ||||||||| || ||||| |||||||||  | |||
Sbjct: 501 atcctcttctgatgaattgtttaactgagggagatgaggagatttcagcaatttctctgg 560

                                                                       
Query: 460 atgccataaagcgtctagcagaaattcctaaagggaccgatatcatatttccaccagatg 519
           ||| |||||| ||| ||||| ||||||||||||| |  || ||||||||||||||| |||
Sbjct: 561 atggcataaaacgtttagcacaaattcctaaaggcattgagatcatatttccaccaaatg 620

                                                                       
Query: 520 ggcaaggat---tgcaactcaacaaagtggcagcccagtcatcctcaatggcacgaattc 576
           | ||||| |   |||||||| ||||||||||||| |||||||| || |||||||||||||
Sbjct: 621 gtcaagggtctgtgcaactccacaaagtggcagctcagtcatcgtccatggcacgaattc 680

                                          
Query: 577 gcattctatctttgatagctaagctctttgc 607
           ||||||||||  |||||||||||||||||||
Sbjct: 681 gcattctatcactgatagctaagctctttgc 711
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>dbj|AK062090.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-G10, full
           insert sequence
          Length = 1872

 Score =  391 bits (197), Expect = e-105
 Identities = 478/571 (83%), Gaps = 3/571 (0%)
 Strand = Plus / Plus

                                                                       
Query: 40  ccggcgagctggaagccgtgttccgtgcggcggccgacttcgcctcctacccaggagtgc 99
           |||||||| |||||||  || |||| ||||| || || ||||| ||||||||||||| ||
Sbjct: 106 ccggcgagatggaagcgatgctccgggcggcagcggagttcgcgtcctacccaggagcgc 165

                                                                       
Query: 100 atggcgaggacgcagtgaggcagttcctggagcagttccctcttcatgacctgctaggtg 159
           |||| || ||| | |||||||||||||||||||| | |||||| |   | ||| ||||||
Sbjct: 166 atggtgatgacaccgtgaggcagttcctggagcaataccctctgcccaagctgttaggtg 225

                                                                       
Query: 160 cgttgcagagtcagggagccgagcctgagacggttgaaactgttgcagcttgcttggaca 219
           | ||||||||| |||  |  |  |||| || || ||||||| |||| || ||||||||||
Sbjct: 226 cattgcagagtgaggctgatgtacctgggatggatgaaactattgccgcatgcttggaca 285

                                                                       
Query: 220 aagtattttcgtccagatatggagcttcacttctgcccagctatgctgcatttattgaag 279
           |||||||||| || ||||||||||| ||| ||||||| ||||||| |||||||||| |||
Sbjct: 286 aagtattttcttcgagatatggagcatcatttctgccaagctatggtgcatttattcaag 345

                                                                       
Query: 280 ctgggttgctcacaaacctaaacaatatcagacaactggcctgcaaagcggtggtacatc 339
           |||| |||||  |||||   || |||| ||||||||| ||||||||||| ||| ||||||
Sbjct: 346 ctggattgcttgcaaactcgaagaataccagacaactagcctgcaaagctgtgatacatc 405

                                                                       
Query: 340 ttcttgacaaggctgaagatagtgatgttgccgtggacacatttgtacagcacaatctgt 399
           ||||||| ||||||| |||||||| |||||  |||||||||||||| ||||||||||| |
Sbjct: 406 ttcttgataaggctggagatagtgctgttgttgtggacacatttgttcagcacaatctat 465

                                                                       
Query: 400 accctcttctgatcaactgcttgattgagggagacgaagagatctcagcaattgttttgg 459
           | ||||||||||| || || || | ||||||||| || ||||| |||||||||  | |||
Sbjct: 466 atcctcttctgatgaattgtttaactgagggagatgaggagatttcagcaatttctctgg 525

                                                                       
Query: 460 atgccataaagcgtctagcagaaattcctaaagggaccgatatcatatttccaccagatg 519
           ||| |||||| ||| ||||| ||||||||||||| |  || ||||||||||||||| |||
Sbjct: 526 atggcataaaacgtttagcacaaattcctaaaggcattgagatcatatttccaccaaatg 585

                                                                       
Query: 520 ggcaaggat---tgcaactcaacaaagtggcagcccagtcatcctcaatggcacgaattc 576
           | ||||| |   |||||||| ||||||||||||| |||||||| || |||||||||||||
Sbjct: 586 gtcaagggtctgtgcaactccacaaagtggcagctcagtcatcgtccatggcacgaattc 645

                                          
Query: 577 gcattctatctttgatagctaagctctttgc 607
           ||||||||||  |||||||||||||||||||
Sbjct: 646 gcattctatcactgatagctaagctctttgc 676
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>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03,
             complete sequence
          Length = 144601

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                         
Query: 329   ggtggtacatcttcttgacaaggctgaagatagtgatgttgccgtggacacatttgtaca 388
             |||| ||||||||||||| ||||||| |||||||| |||||  |||||||||||||| ||
Sbjct: 89587 ggtgatacatcttcttgataaggctggagatagtgctgttgttgtggacacatttgttca 89646

                                     
Query: 389   gcacaatctgtaccctcttctgat 412
             ||||||||| || |||||||||||
Sbjct: 89647 gcacaatctatatcctcttctgat 89670



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                         
Query: 194   tgaaactgttgcagcttgcttggacaaagtattttcgtccagatatggagcttcacttct 253
             ||||||| |||| || |||||||||||||||||||| || ||||||||||| ||| ||||
Sbjct: 89158 tgaaactattgccgcatgcttggacaaagtattttcttcgagatatggagcatcatttct 89217

                        
Query: 254   gcccagctatg 264
             ||| |||||||
Sbjct: 89218 gccaagctatg 89228



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                       
Query: 566   ggcacgaattcgcattctatctttgatagctaagctctttgc 607
             |||||||||||||||||||||  |||||||||||||||||||
Sbjct: 90126 ggcacgaattcgcattctatcactgatagctaagctctttgc 90167



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 54/62 (87%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                         
Query: 501   atcatatttccaccagatgggcaaggat---tgcaactcaacaaagtggcagcccagtca 557
             ||||||||||||||| |||| ||||| |   |||||||| ||||||||||||| ||||||
Sbjct: 89954 atcatatttccaccaaatggtcaagggtctgtgcaactccacaaagtggcagctcagtca 90013

               
Query: 558   tc 559
             ||
Sbjct: 90014 tc 90015



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 438   gagatctcagcaattgttttggatgccataaagcgtctagcagaaattcctaaagg 493
             ||||| |||||||||  | |||||| |||||| ||| ||||| |||||||||||||
Sbjct: 89800 gagatttcagcaatttctctggatggcataaaacgtttagcacaaattcctaaagg 89855



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 91    caggagtgcatggcgaggacgcagtgaggcagttcctggagcagttccctct 142
             |||||| |||||| || ||| | |||||||||||||||||||| | ||||||
Sbjct: 88885 caggagcgcatggtgatgacaccgtgaggcagttcctggagcaataccctct 88936



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                         
Query: 267   gcatttattgaagctgggttgctcacaaacctaaacaatatcagacaactggcctgcaaa 326
             ||||||||| ||||||| |||||  |||||   || |||| ||||||||| |||||||||
Sbjct: 89425 gcatttattcaagctggattgcttgcaaactcgaagaataccagacaactagcctgcaaa 89484

               
Query: 327   gc 328
             ||
Sbjct: 89485 gc 89486
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                            
Query: 329      ggtggtacatcttcttgacaaggctgaagatagtgatgttgccgtggacacatttgtaca 388
                |||| ||||||||||||| ||||||| |||||||| |||||  |||||||||||||| ||
Sbjct: 27493457 ggtgatacatcttcttgataaggctggagatagtgctgttgttgtggacacatttgttca 27493516

                                        
Query: 389      gcacaatctgtaccctcttctgat 412
                ||||||||| || |||||||||||
Sbjct: 27493517 gcacaatctatatcctcttctgat 27493540



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                            
Query: 194      tgaaactgttgcagcttgcttggacaaagtattttcgtccagatatggagcttcacttct 253
                ||||||| |||| || |||||||||||||||||||| || ||||||||||| ||| ||||
Sbjct: 27493028 tgaaactattgccgcatgcttggacaaagtattttcttcgagatatggagcatcatttct 27493087

                           
Query: 254      gcccagctatg 264
                ||| |||||||
Sbjct: 27493088 gccaagctatg 27493098



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                          
Query: 566      ggcacgaattcgcattctatctttgatagctaagctctttgc 607
                |||||||||||||||||||||  |||||||||||||||||||
Sbjct: 27493996 ggcacgaattcgcattctatcactgatagctaagctctttgc 27494037



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 54/62 (87%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                            
Query: 501      atcatatttccaccagatgggcaaggat---tgcaactcaacaaagtggcagcccagtca 557
                ||||||||||||||| |||| ||||| |   |||||||| ||||||||||||| ||||||
Sbjct: 27493824 atcatatttccaccaaatggtcaagggtctgtgcaactccacaaagtggcagctcagtca 27493883

                  
Query: 558      tc 559
                ||
Sbjct: 27493884 tc 27493885



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 438      gagatctcagcaattgttttggatgccataaagcgtctagcagaaattcctaaagg 493
                ||||| |||||||||  | |||||| |||||| ||| ||||| |||||||||||||
Sbjct: 27493670 gagatttcagcaatttctctggatggcataaaacgtttagcacaaattcctaaagg 27493725



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                    
Query: 91       caggagtgcatggcgaggacgcagtgaggcagttcctggagcagttccctct 142
                |||||| |||||| || ||| | |||||||||||||||||||| | ||||||
Sbjct: 27492755 caggagcgcatggtgatgacaccgtgaggcagttcctggagcaataccctct 27492806



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                            
Query: 267      gcatttattgaagctgggttgctcacaaacctaaacaatatcagacaactggcctgcaaa 326
                ||||||||| ||||||| |||||  |||||   || |||| ||||||||| |||||||||
Sbjct: 27493295 gcatttattcaagctggattgcttgcaaactcgaagaataccagacaactagcctgcaaa 27493354

                  
Query: 327      gc 328
                ||
Sbjct: 27493355 gc 27493356
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>ref|NM_188724.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2559

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 29  ggagatggacgccggcgagctg 50
           ||||||||||||||||||||||
Sbjct: 822 ggagatggacgccggcgagctg 843
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>emb|BX908736.10| Zebrafish DNA sequence from clone CH211-229C8 in linkage group 18,
              complete sequence
          Length = 159047

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 249    cttctgcccagctatgctgcatttat 274
              ||||||| ||||||||||||||||||
Sbjct: 123370 cttctgctcagctatgctgcatttat 123345
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 29      ggagatggacgccggcgagctg 50
               ||||||||||||||||||||||
Sbjct: 7866591 ggagatggacgccggcgagctg 7866570



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 39       gccggcgagctggaagccgtg 59
                |||||||||||||||||||||
Sbjct: 30913925 gccggcgagctggaagccgtg 30913945
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>dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1066G12
          Length = 136263

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 29    ggagatggacgccggcgagctg 50
             ||||||||||||||||||||||
Sbjct: 61537 ggagatggacgccggcgagctg 61516
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>dbj|AK098860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N23, full
           insert sequence
          Length = 2372

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 29  ggagatggacgccggcgagctg 50
           ||||||||||||||||||||||
Sbjct: 121 ggagatggacgccggcgagctg 142
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>dbj|AK067756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116N03, full
           insert sequence
          Length = 2460

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 29  ggagatggacgccggcgagctg 50
           ||||||||||||||||||||||
Sbjct: 185 ggagatggacgccggcgagctg 206
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>ref|NM_191140.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1578

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 39   gccggcgagctggaagccgtg 59
            |||||||||||||||||||||
Sbjct: 1155 gccggcgagctggaagccgtg 1175
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>gb|DQ151606.1| Corylus avellana clone 28 microsatellite CAC-C028 sequence
          Length = 440

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 1   agcagcagcagcagatggatg 21
           |||||||||||||||||||||
Sbjct: 204 agcagcagcagcagatggatg 224
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>gb|AC092691.3| Homo sapiens 3q BAC RP11-768G7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 170215

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 352  ctgaagatagtgatgttgccg 372
            |||||||||||||||||||||
Sbjct: 6918 ctgaagatagtgatgttgccg 6898
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>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0638D12
          Length = 161277

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 39     gccggcgagctggaagccgtg 59
              |||||||||||||||||||||
Sbjct: 114292 gccggcgagctggaagccgtg 114312
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>dbj|AK110766.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-A06, full
           insert sequence
          Length = 1466

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 39  gccggcgagctggaagccgtg 59
           |||||||||||||||||||||
Sbjct: 940 gccggcgagctggaagccgtg 960
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 21     gccgcggcggagatggacgccggcg 45
              ||||||||||||||||| |||||||
Sbjct: 827096 gccgcggcggagatggaggccggcg 827072
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>dbj|AB034913.1| Mycobacterium gastri MB19 formaldehyde-fixing operon genes (orf1,
            rmpR, rmpB, rmpA, rmpD), partial and complete cds
          Length = 4199

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 33   atggacgccggcgagctggaagccg 57
            ||||||||||||||||| |||||||
Sbjct: 2704 atggacgccggcgagctcgaagccg 2728
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>ref|NM_185475.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3084

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   gtgcatggcgaggacgcagt 115
            ||||||||||||||||||||
Sbjct: 2048 gtgcatggcgaggacgcagt 2029
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 38      cgccggcgagctggaagccg 57
               ||||||||||||||||||||
Sbjct: 2607834 cgccggcgagctggaagccg 2607815
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>gb|AC022775.16| Mus musculus chromosome 15, clone RP23-71O17, complete sequence
          Length = 223532

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     cagcagcagcagatggatgc 22
             ||||||||||||||||||||
Sbjct: 56455 cagcagcagcagatggatgc 56436
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>ref|XM_421381.1| PREDICTED: Gallus gallus similar to hypothetical protein
           DKFZp566J091 (LOC423474), mRNA
          Length = 668

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   agcagcagcagcagatggat 20
           ||||||||||||||||||||
Sbjct: 503 agcagcagcagcagatggat 522
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>gb|AC160550.6| Mus musculus chromosome 15, clone RP23-284G10, complete sequence
          Length = 232182

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      cagcagcagcagatggatgc 22
              ||||||||||||||||||||
Sbjct: 224398 cagcagcagcagatggatgc 224379
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>gb|AC164957.2| Mus musculus BAC clone RP23-480L9 from chromosome 17, complete sequence
          Length = 183439

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     agcagcagcagcagatggat 20
             ||||||||||||||||||||
Sbjct: 86124 agcagcagcagcagatggat 86105
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>emb|AL049825.18|HSJ662B22 Human DNA sequence from clone RP4-662B22 on chromosome 1p12-13.3
             Contains the 3' end of the NGFB gene for nerve growth
             factor (beta polypeptide) and the 5' end of a novel gene,
             complete sequence
          Length = 116521

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   gcgtctagcagaaattccta 489
             ||||||||||||||||||||
Sbjct: 42219 gcgtctagcagaaattccta 42200
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>emb|BX927127.9| Zebrafish DNA sequence from clone DKEY-172K9 in linkage group 18,
             complete sequence
          Length = 121656

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 257   cagctatgctgcatttattgaagc 280
             ||||||||||||||||||| ||||
Sbjct: 34420 cagctatgctgcatttattaaagc 34397
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>dbj|AK127262.1| Homo sapiens cDNA FLJ45329 fis, clone BRHIP3007183, highly  similar
            to Proprotein convertase subtilisin/kexin type 7
            precursor (EC 3.4.21.-)
          Length = 5027

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 107  ggacgcagtgaggcagttcctggagcag 134
            |||| ||||||||||| |||||||||||
Sbjct: 2808 ggacacagtgaggcagctcctggagcag 2835
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>emb|CR594443.1| full-length cDNA clone CS0DI037YB13 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 762

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 107 ggacgcagtgaggcagttcctggagcag 134
           |||| ||||||||||| |||||||||||
Sbjct: 628 ggacacagtgaggcagctcctggagcag 601
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>dbj|AB226660.1| Aspergillus oryzae cDNA, contig sequence: AoEST3522
          Length = 847

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 26  ggcggagatggacgccggcg 45
           ||||||||||||||||||||
Sbjct: 798 ggcggagatggacgccggcg 817
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      ggcggagatggacgccggcg 45
               ||||||||||||||||||||
Sbjct: 1220276 ggcggagatggacgccggcg 1220257
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>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 171236

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   taaacaatatcagacaactg 317
             ||||||||||||||||||||
Sbjct: 44369 taaacaatatcagacaactg 44350
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>gb|AC091899.2| Homo sapiens chromosome 5 clone RP11-158D20, complete sequence
          Length = 139253

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   gagcttcacttctgcccagc 260
             ||||||||||||||||||||
Sbjct: 29709 gagcttcacttctgcccagc 29690
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>ref|XM_932477.1| PREDICTED: Homo sapiens similar to Proprotein convertase
           subtilisin/kexin type 7 precursor (Proprotein convertase
           PC7) (Subtilisin/kexin-like protease PC7) (Prohormone
           convertase PC7) (PC8) (hPC8) (Lymphoma proprotein
           convertase), transcript variant 5 (LOC653303), mRNA
          Length = 1229

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 107 ggacgcagtgaggcagttcctggagcag 134
           |||| ||||||||||| |||||||||||
Sbjct: 260 ggacacagtgaggcagctcctggagcag 287
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>gb|AC026796.5| Homo sapiens chromosome 5 clone CTD-2292M14, complete sequence
          Length = 151019

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   gagcttcacttctgcccagc 260
             ||||||||||||||||||||
Sbjct: 19706 gagcttcacttctgcccagc 19725
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>ref|NM_070625.3| Caenorhabditis elegans Y116A8C.26 (Y116A8C.26) mRNA, complete cds
          Length = 2903

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 45  gagctggaagccgtgttccg 64
           ||||||||||||||||||||
Sbjct: 963 gagctggaagccgtgttccg 982
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 96      gtgcatggcgaggacgcagt 115
               ||||||||||||||||||||
Sbjct: 1465537 gtgcatggcgaggacgcagt 1465556
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>gb|AF057710.1|AF057710 Homo sapiens clone ICRFP700K1680Q06 lymphoma pro-protein convertase
            (LPC) gene, partial cds
          Length = 3921

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 107  ggacgcagtgaggcagttcctggagcag 134
            |||| ||||||||||| |||||||||||
Sbjct: 1707 ggacacagtgaggcagctcctggagcag 1734
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>gb|AF057709.1|AF057709 Homo sapiens clone ICRFP700B2221Q06 lymphoma pro-protein convertase
            (LPC) duplicate gene, duplicated exons 13-17, and
            platelet activating factor acetylhydrolase, alpha2
            subunit (PAF-AH1A2) gene, exon 1
          Length = 9820

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 107  ggacgcagtgaggcagttcctggagcag 134
            |||| ||||||||||| |||||||||||
Sbjct: 1717 ggacacagtgaggcagctcctggagcag 1744
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>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0038F22
          Length = 101666

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    gtgcatggcgaggacgcagt 115
             ||||||||||||||||||||
Sbjct: 72823 gtgcatggcgaggacgcagt 72842
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>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0425F02
          Length = 176979

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     gtgcatggcgaggacgcagt 115
              ||||||||||||||||||||
Sbjct: 174076 gtgcatggcgaggacgcagt 174095
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>emb|BX640723.1|HSM806796 Homo sapiens mRNA; cDNA DKFZp686B01212 (from clone DKFZp686B01212)
          Length = 2516

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 107  ggacgcagtgaggcagttcctggagcag 134
            |||| ||||||||||| |||||||||||
Sbjct: 2327 ggacacagtgaggcagctcctggagcag 2300
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>dbj|AK106449.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E10, full
            insert sequence
          Length = 3083

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   gtgcatggcgaggacgcagt 115
            ||||||||||||||||||||
Sbjct: 2048 gtgcatggcgaggacgcagt 2029
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>gb|AC013417.4|AC013417 Homo sapiens 12q22-103.4-106.5 BAC RP11-397H6 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 114049

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   taaacaatatcagacaactg 317
             ||||||||||||||||||||
Sbjct: 99061 taaacaatatcagacaactg 99042
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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     gcggcggccgacttcgcctc 85
              ||||||||||||||||||||
Sbjct: 904610 gcggcggccgacttcgcctc 904591
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>emb|BX323070.7| Zebrafish DNA sequence from clone DKEY-45H7 in linkage group 18,
             complete sequence
          Length = 103856

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 257   cagctatgctgcatttattgaagc 280
             ||||||||||||||||||| ||||
Sbjct: 11371 cagctatgctgcatttattaaagc 11348
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>emb|AL117204.1|CEY116A8C Caenorhabditis elegans YAC Y116A8C, complete sequence
          Length = 260341

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     gagctggaagccgtgttccg 64
              ||||||||||||||||||||
Sbjct: 185460 gagctggaagccgtgttccg 185441
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>gb|AC005562.1|AC005562 Homo sapiens chromosome 17, clone hRPK.271_K_11, complete sequence
          Length = 199182

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   tcagggagccgagcctgaga 189
             ||||||||||||||||||||
Sbjct: 74481 tcagggagccgagcctgaga 74500
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>dbj|AP000936.7| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-823O21, complete
              sequence
          Length = 219017

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 107    ggacgcagtgaggcagttcctggagcag 134
              |||| ||||||||||| |||||||||||
Sbjct: 216656 ggacacagtgaggcagctcctggagcag 216683
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>dbj|AP000892.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-94B1, complete
            sequence
          Length = 149843

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 107  ggacgcagtgaggcagttcctggagcag 134
            |||| ||||||||||| |||||||||||
Sbjct: 5776 ggacacagtgaggcagctcctggagcag 5749
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>gb|AY746355.1| Phaeodactylum tricornutum delta-6-elongase (elo6) mRNA, complete
           cds
          Length = 993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 506 atttccaccagatgggcaaggatt 529
           |||||||||| |||||||||||||
Sbjct: 742 atttccaccaaatgggcaaggatt 719
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>dbj|AK112792.1| Ciona intestinalis cDNA, clone:cilv015p09, full insert sequence
          Length = 2780

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 197 aactgttgcagcttgcttggacaa 220
           ||||||||||| ||||||||||||
Sbjct: 966 aactgttgcagattgcttggacaa 989
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>gb|DQ304632.1| Triticum urartu clone Tel/Sp52R unknown sequence
          Length = 535

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   gcagcagcagcagatggatg 21
           ||||||||||||||||||||
Sbjct: 291 gcagcagcagcagatggatg 310
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>emb|AL953842.8| Zebrafish DNA sequence from clone DKEY-33I11, complete sequence
          Length = 225654

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     agcagcagcagcagatggat 20
             ||||||||||||||||||||
Sbjct: 72186 agcagcagcagcagatggat 72205
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>gb|U73638.1|U73638 Human Chromosome 11 Cosmid cSRL16b6, complete sequence
          Length = 34352

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 107   ggacgcagtgaggcagttcctggagcag 134
             |||| ||||||||||| |||||||||||
Sbjct: 18660 ggacacagtgaggcagctcctggagcag 18687
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>emb|AL672231.7| Mouse DNA sequence from clone RP23-54C14 on chromosome X, complete
             sequence
          Length = 109110

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 511   caccagatgggcaaggattg 530
             ||||||||||||||||||||
Sbjct: 51183 caccagatgggcaaggattg 51164
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>dbj|AP005018.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-109L13,
           complete sequences
          Length = 67000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 107 ggacgcagtgaggcagttcctggagcag 134
           |||| ||||||||||| |||||||||||
Sbjct: 551 ggacacagtgaggcagctcctggagcag 578


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,570,182
Number of Sequences: 3902068
Number of extensions: 5570182
Number of successful extensions: 249365
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 248705
Number of HSP's gapped (non-prelim): 655
length of query: 616
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 593
effective length of database: 17,143,297,704
effective search space: 10165975538472
effective search space used: 10165975538472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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