ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart10a09 |
|---|---|
| Clone Library Name | barley_pub |
>P100_HCMVA (P08318) Large structural phosphoprotein (pp150) (150 kDa matrix| phosphoprotein) (Basic phosphoprotein) (BPP) (Tegument protein UL32) Length = 1048 Score = 32.0 bits (71), Expect = 0.90 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Frame = -3 Query: 444 PGVPCNGKNPGSISGAKRTTSNFG-----TSLHPPSG*ASSETHPPTPSA 310 P VP +G PG +SG+ R S T+++PPS A S P A Sbjct: 916 PSVPVSGSAPGRLSGSSRAASTTPTYPAVTTVYPPSSTAKSSVSNAPPVA 965
>VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = -3 Query: 468 GSTSQQTQPGVPCNGKNPGSISGAKRTTSNFGTSLHPPSG*ASSETHPPTPSADG 304 G+TSQ + PG PG ++ K T TS PSG +T PT ++ G Sbjct: 704 GTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSG---QKTAVPTVTSTG 755
>VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = -3 Query: 468 GSTSQQTQPGVPCNGKNPGSISGAKRTTSNFGTSLHPPSG*ASSETHPPTPSADG 304 G+TSQ + PG PG ++ K T TS PSG +T PT ++ G Sbjct: 704 GTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSG---QKTAVPTVTSTG 755
>TIP60_DROME (Q960X4) Histone acetyltransferase Tip60 (EC 2.3.1.48)| Length = 541 Score = 31.6 bits (70), Expect = 1.2 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = -3 Query: 474 IIGSTSQQTQPGVPCNGKNPGSISGAKRTTSNFGTSLHPPSG*ASSETHPPTPSADG 304 + GS S+ T P P G+++ +T + S+ PP+G +S P TPS+ G Sbjct: 106 LAGSVSRPTSPQHP----GSGALAAIPQTPTGASGSVPPPAGIPNSVAPPGTPSSGG 158
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 31.6 bits (70), Expect = 1.2 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = -3 Query: 468 GSTSQQTQPGVPCNGKNPGSISGAKRTTSNFGTSLHPPSG*ASSETHPPTPSADG 304 G+TSQ + PG PG ++ K T TS PSG +T PT ++ G Sbjct: 725 GTTSQASGPGNSSTSTKPGEVNVTKGTPPQNATSPQAPSG---QKTAVPTVTSTG 776
>MOK1_SCHPO (Q9USK8) Cell wall alpha-1,3-glucan synthase mok1 (EC 2.4.1.183)| Length = 2410 Score = 31.2 bits (69), Expect = 1.5 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +3 Query: 237 GLTLLRRAEEKGALCLDGSAPGYHLQRGSGGGSRSWLIH 353 G+ LL +E+G LD SA Y R + +R+W IH Sbjct: 490 GIPLLYYGDEQGMYVLDNSANNYLYGRQAMNSARAWYIH 528
>VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21| Length = 985 Score = 30.8 bits (68), Expect = 2.0 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -3 Query: 459 SQQTQPGVPCNGKNPGSISGAKRTTSNFGTSLHPPSG*ASSETHPPTP 316 S T PGVP + P + ++T N +SL P+G A + PP P Sbjct: 508 SAVTTPGVPPSANLPSASGRPQQTGGNSVSSLPTPTGEALPDGAPPPP 555
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%) Frame = +3 Query: 315 RGSGGGSRSWLI----HLEGGGWCRNLKSCASR 401 RGS GG+R WL HL+ GG+ +LK SR Sbjct: 113 RGSRGGTRGWLPSHEGHLDDGGYTPDLKMSYSR 145
>Y215_ADE02 (P03291) Hypothetical protein F-215| Length = 215 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = -2 Query: 376 RHQPPPSKWMSQLRDPPPDPLCRWYPGALPS 284 RHQP P +S P PDP R P P+ Sbjct: 185 RHQPAPGNQVSPGPSPRPDPAMRGKPAGAPA 215
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 29.6 bits (65), Expect = 4.4 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 9/65 (13%) Frame = -3 Query: 468 GSTSQQTQPGV-----PCNGKN----PGSISGAKRTTSNFGTSLHPPSG*ASSETHPPTP 316 G T Q +PG P G + P + G T GTS P G +S +H PT Sbjct: 568 GGTVQTPEPGTSQPMPPSMGTSTSHQPATPGGGTAQTPEAGTSQPMPPGMGTSTSHQPTT 627 Query: 315 SADGT 301 GT Sbjct: 628 PGGGT 632 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/38 (42%), Positives = 18/38 (47%) Frame = -3 Query: 417 PGSISGAKRTTSNFGTSLHPPSG*ASSETHPPTPSADG 304 P G T+S GT HPPSG + PPT S G Sbjct: 485 PEPSQGPSTTSSGGGTGPHPPSG---TTLRPPTSSTPG 519
>MUC13_MOUSE (P19467) Mucin-13 precursor (Cell surface antigen 114/A10)| (Lymphocyte antigen 64) Length = 573 Score = 29.3 bits (64), Expect = 5.8 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 14/74 (18%) Frame = -3 Query: 483 LIFIIGSTSQQ---------TQPGVPCNGKNPGSISGAKRTTSNFG-----TSLHPPSG* 346 L+ +GS+SQ T P ++PGS S A TTS+ G T++ S Sbjct: 12 LLVTVGSSSQASSTTSSSGGTSPPTTVQSQSPGSSSQASTTTSSSGGASPPTTVQSQSPG 71 Query: 345 ASSETHPPTPSADG 304 +SS+ T S+ G Sbjct: 72 SSSQASTTTSSSGG 85
>EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin microfibril| interface-located protein 5) (Elastin microfibril interfacer 5) Length = 766 Score = 29.3 bits (64), Expect = 5.8 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = +3 Query: 222 SPALVGLTLLRRAEEKGALCLDGSAPGYHLQRGSGGGSRSWLIHLEGGGW 371 +PA LT L A +G + DG G G+ GG+R + L+ GGW Sbjct: 414 APAGDELTRLSAAMLEGGV--DGLLEGLETLNGTEGGARGCCLRLDMGGW 461 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,841,557 Number of Sequences: 219361 Number of extensions: 988850 Number of successful extensions: 3487 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3232 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3471 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
