>GIDA_STRT2 (Q5M250) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 633

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
 Frame = +2

Query: 251 RALDALGVGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGP----HEVRCVQRNV 418
           R +DALG G+  +      + ++++++  G   R +  + +  L      H V   +   
Sbjct: 63  REIDALG-GEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLT 121

Query: 419 LLQALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLIG 571
           L Q++ DE+  +     SK+V +        GAK + +  G+ LR +++IG
Sbjct: 122 LRQSMVDEILVE----DSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIG 168

>GIDA_STRT1 (Q5LXK0) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 633

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
 Frame = +2

Query: 251 RALDALGVGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGP----HEVRCVQRNV 418
           R +DALG G+  +      + ++++++  G   R +  + +  L      H V   +   
Sbjct: 63  REIDALG-GEMGKNIDKTYIQMKMLNTGKGPAVRALRAQADKALYAMTMKHTVERQENLT 121

Query: 419 LLQALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLIG 571
           L Q++ DE+  +     SK+V +        GAK + +  G+ LR +++IG
Sbjct: 122 LRQSMVDEILVE----DSKVVGVRTATNQKYGAKAVVVTTGTALRGEIIIG 168

>TNNC_HALRO (P06706) Troponin C, body wall muscle|
          Length = 155

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = +2

Query: 272 VGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGPHEVRCVQRNVLLQALED-ELP 448
           +  K  G+ +++LG         E+  E+D+  +G +   E  C+     +QA E+ ++P
Sbjct: 28  ISSKELGKVMKMLGQNPTEKDLQEMIEEVDIDGSGTIDFEEF-CLMMYRQMQAQEEAKIP 86

Query: 449 PDTIRYSSKIVSIDDQDGDGDGAKILHLADGS 544
               +  S+   + D DGDG G ++    DG+
Sbjct: 87  EREEKELSEAFRLFDLDGDGIGDELKAALDGT 118

>UBIF_ECOLI (P75728) 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol|
           hydroxylase (EC 1.14.13.-)
          Length = 391

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 7/139 (5%)
 Frame = +2

Query: 185 VLESSPDRRTSGFAFFTWTNAFRALDALGVGDKMRGRHLQ-LLGLRVMSSSTGEI---AR 352
           V +S PD R S  +      +   L  LGV D ++         L      T  +   A 
Sbjct: 43  VADSQPDVRISAIS----AASVSLLKGLGVWDAVQAMRCHPYRRLETWEWETAHVVFDAA 98

Query: 353 EMDLRVNGKLGPHEVRCVQRNVLLQALEDEL---PPDTIRYSSKIVSIDDQDGDGDGAKI 523
           E+ L + G +       V+  VL QAL   L   P  T+R    ++++   D      + 
Sbjct: 99  ELKLPLLGYM-------VENTVLQQALWQALEAHPKVTLRVPGSLIALHRHDD----LQE 147

Query: 524 LHLADGSTLRAKVLIGCDG 580
           L L  G  +RAK++IG DG
Sbjct: 148 LELKGGEVIRAKLVIGADG 166

>GIDA_STRPN (Q97T36) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 637

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 22/107 (20%), Positives = 48/107 (44%)
 Frame = +2

Query: 251 RALDALGVGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGPHEVRCVQRNVLLQA 430
           R +DALG G+  +      + ++++++  G   R +  + + +L   E+R    N     
Sbjct: 63  REVDALG-GEMAKTIDKTYIQMKMLNTGKGPAVRALRAQADKELYSKEMRKTVENQENLT 121

Query: 431 LEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLIG 571
           L   +  + +    K+V +         AK + +  G+ LR +++IG
Sbjct: 122 LRQTMIDEILVEDGKVVGVRTATHQEYAAKAVIVTTGTALRGEIIIG 168

>GIDA_LACLA (Q9CEJ4) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 625

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
 Frame = +2

Query: 251 RALDALGVGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGPHEVRCV---QRNVL 421
           R +DALG G+  R      + ++++++  G   R +  + +       ++     Q N+ 
Sbjct: 61  REIDALG-GEMGRNIDKTYIQMKMLNTGKGPAVRALRAQADKDEYADSMKNTVSDQENLT 119

Query: 422 L-QALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLIG 571
           L Q + +EL  D  +   K++ I    G   GAK + +  G+ LR +++IG
Sbjct: 120 LRQGMVEELILDEEK--KKVIGIKTSTGTKYGAKAVIITTGTALRGEIIIG 168

>COQ6_MOUSE (Q8R1S0) Ubiquinone biosynthesis monooxgenase COQ6 (EC 1.14.13.-)|
          Length = 469

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +2

Query: 404 VQRNVLLQALEDELPPDTIR----YSSKIV--SIDDQDGDGDGAKILH--LADGSTLRAK 559
           V+ +V++ AL  +L     R    Y SK V  S        D +  +H  L DGSTL+ K
Sbjct: 144 VENDVIMYALTKQLEAVADRVKVLYESKAVGYSWPGAFSMADSSPWVHITLGDGSTLQTK 203

Query: 560 VLIGCDG 580
           +LIG DG
Sbjct: 204 LLIGADG 210

>GIDA1_FUSNN (Q8RHA1) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA 1 (Glucose-inhibited division protein A 1)
          Length = 628

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
 Frame = +2

Query: 239 TNAFRALDALGVGDKMRGRHLQLLGLRV--MSSSTGEIAR---------EMDLRVNGKLG 385
           +N    +D LG G+   GRH+    L++  +++S G  AR         +   ++  KL 
Sbjct: 55  SNLVTEIDVLG-GEM--GRHIDEFNLQLKDLNTSKGPAARITRGQADKYKYRRKMREKLE 111

Query: 386 PHE-VRCVQRNVLLQALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKV 562
             E +  +Q  V    +ED        Y  KI  I  + G    AK++ LA G+ L+ K+
Sbjct: 112 KTENISLIQDCVEEILVEDIKDTQNSNYIKKITGIKTRLGIIYNAKVIVLATGTFLKGKI 171

Query: 563 LIG 571
           +IG
Sbjct: 172 VIG 174

>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 182 VVLESSPDRRTSGFAFFTWTNAFRALDALGV--GDKMRGRHLQL 307
           VV++    +R+ GF F T+TN   A DA+    G+ + GR +++
Sbjct: 36  VVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRV 79

>NALP6_HUMAN (P59044) NACHT-, LRR- and PYD-containing protein 6|
           (PYRIN-containing APAF1-like protein 5)
          Length = 892

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -2

Query: 358 HLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEGEAGRATVRRRLQHHA 179
           H+ +   R +  + +  ++    + L+  PE     E +GP EE E GRA   RR   H 
Sbjct: 125 HVLQLHARVKERNARSVKITKRFTKLLIAPESAAPEEALGPAEEPEPGRA---RRSDTHT 181

Query: 178 PNAL 167
            N L
Sbjct: 182 FNRL 185

>MINC_PHOLL (Q7N522) Probable septum site-determining protein minC|
          Length = 227

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 407 QRNVLLQALED--ELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLIGC 574
           Q  ++LQAL++  E  PD ++ +  +++I     D D   + H  D +  R   + GC
Sbjct: 24  QPEIILQALQEKVEQAPDFLKNAPVVINISALPADADLKALHHAIDSAGFRIVGMSGC 81

>GIDA_LACLC (O32806) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
           (Fragment)
          Length = 535

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
 Frame = +2

Query: 251 RALDALGVGDKMRGRHLQLLGLRVMSSSTGEIAREMDLRVNGKLGPHEVRCV---QRNVL 421
           R +DALG G+  R      + ++++++  G   R +  + +       ++     Q N+ 
Sbjct: 42  REIDALG-GEMGRNIDKTYIQMKMLNTGKGPAVRALRAQADKDEYAASMKNTVSDQENLT 100

Query: 422 L-QALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLIG 571
           L Q + +EL  D  +   K++ +    G   GAK + +  G+ LR +++IG
Sbjct: 101 LRQGMVEELILDDEK--QKVIGVRTSTGTQYGAKAVIITTGTALRGEIIIG 149

>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1138

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 391 MGSQFSVHPEIHLSRYFTRGRRHDPQPQQLQMSASHLVPYPEGVKRAEGVGPCEEG 224
           MGS ++    + +   F +   H P   Q+Q      +PY +  +R  G GP  +G
Sbjct: 630 MGSGYTFPAGVSVPGTFLQSTAHSPAGNQVQAGKQSHIPYSQ--QRPSGPGPMNQG 683

>NHG1_PSEPU (P23262) Salicylate hydroxylase (EC 1.14.13.1) (Salicylate|
           1-monooxygenase)
          Length = 433

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 404 VQRNVLLQALEDELPPDTIRYSSKIVSIDDQDGDGDGAKILHLADGSTLRAKVLIGCDG 580
           V R   + AL   LP    ++  +   ++ Q G+    ++L   DG+  R  +LIG DG
Sbjct: 108 VHRADFIDALVTHLPEGIAQFGKRATQVEQQGGE---VQVL-FTDGTEYRCDLLIGADG 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,006,958
Number of Sequences: 219361
Number of extensions: 1548192
Number of successful extensions: 6352
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6348
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)