ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480184.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.002
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.002
3dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.002
4dbj|AK108144.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.002
5gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 44 0.025
6gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete... 42 0.10
7gb|AY110904.1| Zea mays CL18291_1 mRNA sequence 42 0.10
8gb|DQ213253.1| Taeniopygia guttata clone 0061P0009H11 mRNA sequence 40 0.40
9ref|NM_017129.1| Rattus norvegicus cardiotrophin 1 (Ctf1), mRNA 38 1.6
10ref|NM_007795.1| Mus musculus cardiotrophin 1 (Ctf1), mRNA 38 1.6
11gb|BC024381.1| Mus musculus cardiotrophin 1, mRNA (cDNA clone MG... 38 1.6
12gb|BC072690.1| Rattus norvegicus cardiotrophin 1, mRNA (cDNA clo... 38 1.6
13gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosom... 38 1.6
14gb|AC087189.3| Homo sapiens chromosome 16 clone RP11-43L5, compl... 38 1.6
15gb|AY007567.1| Mus musculus cardiotrophin-1 gene, promoter and c... 38 1.6
16dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 1.6
17gb|U18366.1|MMU18366 Mus musculus cardiotrophin-1 mRNA, complete... 38 1.6
18gb|AC138528.8| Mus musculus chromosome 3, clone RP23-329L9, comp... 38 1.6
19dbj|D78591.1|RATCAR Rat mRNA for cardiotrophin-1, complete cds 38 1.6
20ref|NM_193200.1| Oryza sativa (japonica cultivar-group), predic... 36 6.2
21gb|BC072812.1| Xenopus laevis RRM-containing protein SEB-4, mRNA... 36 6.2
22gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete se... 36 6.2
23ref|XM_542977.2| PREDICTED: Canis familiaris similar to otoferli... 36 6.2
24gb|BC079289.1| Rattus norvegicus DnaJ (Hsp40) homolog, subfamily... 36 6.2
25ref|XM_805206.1| Trypanosoma cruzi strain CL Brener hypothetical... 36 6.2
26ref|XM_807553.1| Trypanosoma cruzi strain CL Brener hypothetical... 36 6.2
27ref|NM_001013887.1| Rattus norvegicus DnaJ (Hsp40) homolog, subf... 36 6.2
28gb|AC015968.4| Homo sapiens BAC clone RP11-133L20 from 7, comple... 36 6.2
29gb|AC011290.3| Homo sapiens BAC clone RP11-64I2 from 7, complete... 36 6.2
30emb|CR693895.2|CNS0FYCZ Tetraodon nigroviridis full-length cDNA 36 6.2
31gb|AC164432.3| Mus musculus BAC clone RP23-394G23 from chromosom... 36 6.2
32gb|AC151992.3| Mus musculus BAC clone RP23-212H13 from chromosom... 36 6.2
33ref|NM_176746.1| Drosophila melanogaster forked CG5424-RC, trans... 36 6.2
34ref|NM_176745.1| Drosophila melanogaster forked CG5424-RD, trans... 36 6.2
35ref|NM_078660.2| Drosophila melanogaster forked CG5424-RB, trans... 36 6.2
36gb|AC013432.4| Drosophila melanogaster, chromosome X, region 15F... 36 6.2
37gb|AC171006.3| Gallus gallus BAC clone CH261-172K16 from chromos... 36 6.2
38gb|AC012096.8|AC012096 Drosophila melanogaster, chromosome X, re... 36 6.2
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.2
40gb|AC171112.2| Gallus gallus BAC clone CH261-138H22 from chromos... 36 6.2
41gb|AC146134.4| Pan troglodytes BAC clone RP43-4D8 from chromosom... 36 6.2
42dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic D... 36 6.2
43gb|AC092153.4| Homo sapiens BAC clone RP11-252K7 from 2, complet... 36 6.2
44gb|AF223427.1|AF223427 Xenopus laevis RRM-containing protein SEB... 36 6.2
45dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 36 6.2
46gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 ... 36 6.2
47emb|AJ242524.1|CRE242524 Chlamydomonas reinhardtii partial dhc10... 36 6.2
48dbj|AP003440.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 36 6.2
49dbj|AP000463.2| Homo sapiens genomic DNA, chromosome 11q clone:P... 36 6.2
50emb|AJ491820.1|OSA491820 Oryza sativa (japonica cultivar-group) ... 36 6.2
51emb|AJ491819.1|OSA491819 Oryza sativa (japonica cultivar-group) ... 36 6.2
52emb|AJ866919.1| Gallus gallus mRNA for SCO-spondin (sco-spondin ... 36 6.2
53emb|AL596246.10| Mouse DNA sequence from clone RP23-186E14 on ch... 36 6.2
54emb|X69871.1|DMFORKEDA D.melanogaster putative f gene 36 6.2
55dbj|AB017653.1| Homo sapiens genomic DNA, chromosome 11q23.2, cl... 36 6.2
56dbj|D21203.2|DROFP Drosophila melanogaster forked mRNA for large... 36 6.2 
>ref|XM_480184.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1223

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 13  ctgccgcagccgctcatcctggtgctgcagctgctc 48
           ||||||||||||||  | ||||||||||||||||||
Sbjct: 120 ctgccgcagccgctggtgctggtgctgcagctgctc 155
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 13      ctgccgcagccgctcatcctggtgctgcagctgctc 48
               ||||||||||||||  | ||||||||||||||||||
Sbjct: 3321118 ctgccgcagccgctggtgctggtgctgcagctgctc 3321083
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>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0438H08
          Length = 148626

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 13    ctgccgcagccgctcatcctggtgctgcagctgctc 48
             ||||||||||||||  | ||||||||||||||||||
Sbjct: 98685 ctgccgcagccgctggtgctggtgctgcagctgctc 98650
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>dbj|AK108144.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-E12, full
           insert sequence
          Length = 1223

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 13  ctgccgcagccgctcatcctggtgctgcagctgctc 48
           ||||||||||||||  | ||||||||||||||||||
Sbjct: 120 ctgccgcagccgctggtgctggtgctgcagctgctc 155
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 0.025
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 12      cctgccgcagccgctcatcctg 33
               ||||||||||||||||||||||
Sbjct: 3286442 cctgccgcagccgctcatcctg 3286463
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>gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete sequence
          Length = 136159

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    gctcatcctggtgctgcagct 44
             |||||||||||||||||||||
Sbjct: 91395 gctcatcctggtgctgcagct 91415
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>gb|AY110904.1| Zea mays CL18291_1 mRNA sequence
          Length = 631

 Score = 42.1 bits (21), Expect = 0.10
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 28  atcctggtgctgcagctgctc 48
           |||||||||||||||||||||
Sbjct: 560 atcctggtgctgcagctgctc 540
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>gb|DQ213253.1| Taeniopygia guttata clone 0061P0009H11 mRNA sequence
          Length = 1188

 Score = 40.1 bits (20), Expect = 0.40
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  tcctggtgctgcagctgctc 48
           ||||||||||||||||||||
Sbjct: 505 tcctggtgctgcagctgctc 524
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>ref|NM_017129.1| Rattus norvegicus cardiotrophin 1 (Ctf1), mRNA
          Length = 1398

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   catcctgccgcagccgctc 27
           |||||||||||||||||||
Sbjct: 308 catcctgccgcagccgctc 290
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>ref|NM_007795.1| Mus musculus cardiotrophin 1 (Ctf1), mRNA
          Length = 1345

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   catcctgccgcagccgctc 27
           |||||||||||||||||||
Sbjct: 290 catcctgccgcagccgctc 272
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>gb|BC024381.1| Mus musculus cardiotrophin 1, mRNA (cDNA clone MGC:36108
           IMAGE:4986446), complete cds
          Length = 1374

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   catcctgccgcagccgctc 27
           |||||||||||||||||||
Sbjct: 282 catcctgccgcagccgctc 264
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>gb|BC072690.1| Rattus norvegicus cardiotrophin 1, mRNA (cDNA clone MGC:91750
           IMAGE:7096800), complete cds
          Length = 1385

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   catcctgccgcagccgctc 27
           |||||||||||||||||||
Sbjct: 297 catcctgccgcagccgctc 279
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>gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosome 7, complete sequence
          Length = 204278

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      catcctgccgcagccgctc 27
              |||||||||||||||||||
Sbjct: 177750 catcctgccgcagccgctc 177732
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>gb|AC087189.3| Homo sapiens chromosome 16 clone RP11-43L5, complete sequence
          Length = 184877

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     cctggtgctgcagctgctc 48
              |||||||||||||||||||
Sbjct: 106479 cctggtgctgcagctgctc 106461
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>gb|AY007567.1| Mus musculus cardiotrophin-1 gene, promoter and complete cds
          Length = 9713

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 9    catcctgccgcagccgctc 27
            |||||||||||||||||||
Sbjct: 8552 catcctgccgcagccgctc 8534
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 5       gcctcatcctgccgcagccgctc 27
               |||||||||||||||||| ||||
Sbjct: 8761045 gcctcatcctgccgcagctgctc 8761023
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>gb|U18366.1|MMU18366 Mus musculus cardiotrophin-1 mRNA, complete cds
          Length = 1345

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   catcctgccgcagccgctc 27
           |||||||||||||||||||
Sbjct: 290 catcctgccgcagccgctc 272
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>gb|AC138528.8| Mus musculus chromosome 3, clone RP23-329L9, complete sequence
          Length = 188290

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    catcctggtgctgcagctg 45
             |||||||||||||||||||
Sbjct: 60314 catcctggtgctgcagctg 60332
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>dbj|D78591.1|RATCAR Rat mRNA for cardiotrophin-1, complete cds
          Length = 1398

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 9   catcctgccgcagccgctc 27
           |||||||||||||||||||
Sbjct: 308 catcctgccgcagccgctc 290
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>ref|NM_193200.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1629

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 29   tcctggtgctgcagctgc 46
            ||||||||||||||||||
Sbjct: 1397 tcctggtgctgcagctgc 1380
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>gb|BC072812.1| Xenopus laevis RRM-containing protein SEB-4, mRNA (cDNA clone
           MGC:80153 IMAGE:4970239), complete cds
          Length = 2335

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 28  atcctggtgctgcagctg 45
           ||||||||||||||||||
Sbjct: 817 atcctggtgctgcagctg 800
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>gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete sequence
          Length = 51685

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    ctggtgctgcagctgctc 48
             ||||||||||||||||||
Sbjct: 45735 ctggtgctgcagctgctc 45752
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>ref|XM_542977.2| PREDICTED: Canis familiaris similar to otoferlin (LOC485853), mRNA
          Length = 5953

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 27   catcctggtgctgcagctgctc 48
            |||||||||||||| |||||||
Sbjct: 5839 catcctggtgctgctgctgctc 5860
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>gb|BC079289.1| Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 18, mRNA
            (cDNA clone MGC:94420 IMAGE:7134364), complete cds
          Length = 1430

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   ctgccgcagccgctcatc 30
            ||||||||||||||||||
Sbjct: 1245 ctgccgcagccgctcatc 1228
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>ref|XM_805206.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509205.20) partial mRNA
          Length = 1242

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 9   catcctgccgcagccgct 26
           ||||||||||||||||||
Sbjct: 499 catcctgccgcagccgct 482
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>ref|XM_807553.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508699.30) partial mRNA
          Length = 1242

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 9   catcctgccgcagccgct 26
           ||||||||||||||||||
Sbjct: 499 catcctgccgcagccgct 482
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>ref|NM_001013887.1| Rattus norvegicus DnaJ (Hsp40) homolog, subfamily C, member 18
            (Dnajc18), mRNA
          Length = 1430

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   ctgccgcagccgctcatc 30
            ||||||||||||||||||
Sbjct: 1245 ctgccgcagccgctcatc 1228
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>gb|AC015968.4| Homo sapiens BAC clone RP11-133L20 from 7, complete sequence
          Length = 128638

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 29     tcctggtgctgcagctgc 46
              ||||||||||||||||||
Sbjct: 101065 tcctggtgctgcagctgc 101048
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>gb|AC011290.3| Homo sapiens BAC clone RP11-64I2 from 7, complete sequence
          Length = 117764

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 3     ctgcctcatcctgccgcagccgctca 28
             ||||||||||||||| ||||| ||||
Sbjct: 85693 ctgcctcatcctgcctcagcctctca 85718
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>emb|CR693895.2|CNS0FYCZ Tetraodon nigroviridis full-length cDNA
          Length = 1484

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 28  atcctggtgctgcagctg 45
           ||||||||||||||||||
Sbjct: 575 atcctggtgctgcagctg 592
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>gb|AC164432.3| Mus musculus BAC clone RP23-394G23 from chromosome 8, complete sequence
          Length = 220224

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     gctcatcctggtgctgca 41
              ||||||||||||||||||
Sbjct: 144568 gctcatcctggtgctgca 144551
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>gb|AC151992.3| Mus musculus BAC clone RP23-212H13 from chromosome 8, complete sequence
          Length = 182428

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 24    gctcatcctggtgctgca 41
             ||||||||||||||||||
Sbjct: 23535 gctcatcctggtgctgca 23518
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>ref|NM_176746.1| Drosophila melanogaster forked CG5424-RC, transcript variant C (f),
            mRNA
          Length = 5587

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 30   cctggtgctgcagctgct 47
            ||||||||||||||||||
Sbjct: 2348 cctggtgctgcagctgct 2331
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>ref|NM_176745.1| Drosophila melanogaster forked CG5424-RD, transcript variant D (f),
            mRNA
          Length = 4968

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 30   cctggtgctgcagctgct 47
            ||||||||||||||||||
Sbjct: 1729 cctggtgctgcagctgct 1712
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>ref|NM_078660.2| Drosophila melanogaster forked CG5424-RB, transcript variant B (f),
            mRNA
          Length = 5476

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 30   cctggtgctgcagctgct 47
            ||||||||||||||||||
Sbjct: 2237 cctggtgctgcagctgct 2220
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>gb|AC013432.4| Drosophila melanogaster, chromosome X, region 15F-15F, BAC clone
              BACR01K05, complete sequence
          Length = 162761

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     cctggtgctgcagctgct 47
              ||||||||||||||||||
Sbjct: 130341 cctggtgctgcagctgct 130358
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>gb|AC171006.3| Gallus gallus BAC clone CH261-172K16 from chromosome ul, complete
              sequence
          Length = 206511

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     gctcatcctggtgctgca 41
              ||||||||||||||||||
Sbjct: 111768 gctcatcctggtgctgca 111751
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>gb|AC012096.8|AC012096 Drosophila melanogaster, chromosome X, region 15E-15F, BAC clone
              BACR18O02, complete sequence
          Length = 177793

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 30     cctggtgctgcagctgct 47
              ||||||||||||||||||
Sbjct: 120873 cctggtgctgcagctgct 120856
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 29       tcctggtgctgcagctgc 46
                ||||||||||||||||||
Sbjct: 19239750 tcctggtgctgcagctgc 19239733
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>gb|AC171112.2| Gallus gallus BAC clone CH261-138H22 from chromosome ul, complete
              sequence
          Length = 198767

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     gctcatcctggtgctgca 41
              ||||||||||||||||||
Sbjct: 180215 gctcatcctggtgctgca 180198
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>gb|AC146134.4| Pan troglodytes BAC clone RP43-4D8 from chromosome 7, complete sequence
          Length = 177594

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                        
Query: 3      ctgcctcatcctgccgcagccgctca 28
              ||||||||||||||| ||||| ||||
Sbjct: 119176 ctgcctcatcctgcctcagcctctca 119151
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>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1619_F12
          Length = 133028

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 29    tcctggtgctgcagctgc 46
             ||||||||||||||||||
Sbjct: 59371 tcctggtgctgcagctgc 59354
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>gb|AC092153.4| Homo sapiens BAC clone RP11-252K7 from 2, complete sequence
          Length = 150641

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 30     cctggtgctgcagctgct 47
              ||||||||||||||||||
Sbjct: 102100 cctggtgctgcagctgct 102117
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>gb|AF223427.1|AF223427 Xenopus laevis RRM-containing protein SEB-4 mRNA, complete cds
          Length = 1018

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 28  atcctggtgctgcagctg 45
           ||||||||||||||||||
Sbjct: 626 atcctggtgctgcagctg 609
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 25      ctcatcctggtgctgcag 42
               ||||||||||||||||||
Sbjct: 4322871 ctcatcctggtgctgcag 4322888
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>gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 of 74 of the complete
             sequence
          Length = 314205

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 30    cctggtgctgcagctgct 47
             ||||||||||||||||||
Sbjct: 36058 cctggtgctgcagctgct 36041
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>emb|AJ242524.1|CRE242524 Chlamydomonas reinhardtii partial dhc10 gene for 1 beta dynein
           heavy chain, exon 15
          Length = 219

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 25  ctcatcctggtgctgcag 42
           ||||||||||||||||||
Sbjct: 148 ctcatcctggtgctgcag 165
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>dbj|AP003440.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-682A1, complete
             sequence
          Length = 90492

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     actgcctcatcctgccgc 19
             ||||||||||||||||||
Sbjct: 78177 actgcctcatcctgccgc 78194
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>dbj|AP000463.2| Homo sapiens genomic DNA, chromosome 11q clone:P198, complete sequences
          Length = 87523

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     actgcctcatcctgccgc 19
             ||||||||||||||||||
Sbjct: 47955 actgcctcatcctgccgc 47972
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>emb|AJ491820.1|OSA491820 Oryza sativa (japonica cultivar-group) mRNA for putative sodium
            transporter (hkt3 gene)
          Length = 1587

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 29   tcctggtgctgcagctgc 46
            ||||||||||||||||||
Sbjct: 1415 tcctggtgctgcagctgc 1398
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>emb|AJ491819.1|OSA491819 Oryza sativa (japonica cultivar-group) partial hkt3 gene for putative
            sodium transporter, exons 1-3
          Length = 2700

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 29   tcctggtgctgcagctgc 46
            ||||||||||||||||||
Sbjct: 2071 tcctggtgctgcagctgc 2054
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>emb|AJ866919.1| Gallus gallus mRNA for SCO-spondin (sco-spondin gene)
          Length = 15892

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 29    tcctggtgctgcagctgc 46
             ||||||||||||||||||
Sbjct: 10400 tcctggtgctgcagctgc 10383
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>emb|AL596246.10| Mouse DNA sequence from clone RP23-186E14 on chromosome 11, complete
             sequence
          Length = 144136

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 29    tcctggtgctgcagctgc 46
             ||||||||||||||||||
Sbjct: 47782 tcctggtgctgcagctgc 47799
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>emb|X69871.1|DMFORKEDA D.melanogaster putative f gene
          Length = 19408

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 30    cctggtgctgcagctgct 47
             ||||||||||||||||||
Sbjct: 10043 cctggtgctgcagctgct 10026
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>dbj|AB017653.1| Homo sapiens genomic DNA, chromosome 11q23.2, clone:P198, complete
             sequence
          Length = 87523

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     actgcctcatcctgccgc 19
             ||||||||||||||||||
Sbjct: 39569 actgcctcatcctgccgc 39552
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>dbj|D21203.2|DROFP Drosophila melanogaster forked mRNA for large Forked protein,
            complete cds
          Length = 5472

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 30   cctggtgctgcagctgct 47
            ||||||||||||||||||
Sbjct: 2237 cctggtgctgcagctgct 2220


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 484,543
Number of Sequences: 3902068
Number of extensions: 484543
Number of successful extensions: 151027
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 150567
Number of HSP's gapped (non-prelim): 460
length of query: 48
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 28
effective length of database: 17,155,003,908
effective search space: 480340109424
effective search space used: 480340109424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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