ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 8e-15
2dbj|AK098879.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 8e-15
3dbj|AK060054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 8e-15
4ref|XM_475176.1| Oryza sativa (japonica cultivar-group), predic... 74 5e-10
5gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 74 5e-10
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
7gb|CP000088.1| Thermobifida fusca YX, complete genome 44 0.44
8dbj|AK108102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.44
9gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 44 0.44
10gb|AY657269.1| Synthetic construct Peudomonas aeruginosa clone F... 42 1.7
11gb|AE004860.1| Pseudomonas aeruginosa PAO1, section 421 of 529 o... 42 1.7
12gb|U72494.1|PAU72494 Pseudomonas aeruginosa fumarase (fumC) and ... 42 1.7
13ref|XM_471225.1| Oryza sativa (japonica cultivar-group), predic... 40 6.8
14ref|NM_195508.1| Oryza sativa (japonica cultivar-group) putative... 40 6.8
15ref|NM_195753.1| Oryza sativa (japonica cultivar-group) putative... 40 6.8
16ref|NM_195681.1| Oryza sativa (japonica cultivar-group) putative... 40 6.8
17ref|NM_195341.1| Oryza sativa (japonica cultivar-group) hypothet... 40 6.8
18ref|XM_472106.1| Oryza sativa (japonica cultivar-group), predic... 40 6.8
19ref|XM_471895.1| Oryza sativa (japonica cultivar-group), predic... 40 6.8
20gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 6.8
21gb|AC133004.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
22gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.8
24gb|AC135597.5| Oryza sativa chromosome 3 BAC OSJNBa0034E08 genom... 40 6.8
25gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 6.8
26ref|XM_569652.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 6.8
27emb|BX842603.2|OSJN00300 Oryza sativa genomic DNA, chromosome 4,... 40 6.8
28gb|AC105377.12| Oryza sativa chromosome 10 BAC OSJNBa0034E15 gen... 40 6.8
29emb|BX569684.2|OSJN00290 Oryza sativa genomic DNA, chromosome 4,... 40 6.8
30emb|AL731635.3|OSJN00277 Oryza sativa genomic DNA, chromosome 4,... 40 6.8
31gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
32gb|AF257215.2| Brevibacterium sp. HCU cyclohexanone oxidation ge... 40 6.8
33gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar N... 40 6.8
34gb|AC098682.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.8
35gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.8
36gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 geno... 40 6.8
37gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nippon... 40 6.8
38dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
39dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
40dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
41dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
42dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
44dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
45dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
46ref|XM_230814.3| PREDICTED: Rattus norvegicus chromodomain helic... 40 6.8
47dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
48dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
49dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.8
50dbj|AP005916.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
51dbj|AP005837.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
52dbj|AP005608.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
53dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
54dbj|AP005696.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
55dbj|AP006615.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
56dbj|AP005488.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
57emb|AL442108.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.8
58gb|U66800.1|MSU66800 Mycobacterium smegmatis 3-ketoacyl reductas... 40 6.8
59gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.8
60gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
61gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
62emb|AL662983.3|OSJN00181 Oryza sativa genomic DNA, chromosome 4,... 40 6.8 
>dbj|AK104639.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E05, full
           insert sequence
          Length = 1254

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                       
Query: 415 gagttcgcccggttcaagagcctcatggtgctgtgggcgatgcacccgtgggagcgcgac 474
           |||||| | |||||||||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct: 318 gagttctcgcggttcaagaacctgatggtgatgtgggcgatgcacccgtgggagcgcgac 377

                
Query: 475 gcgcg 479
           |||||
Sbjct: 378 gcgcg 382



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                       
Query: 217 accaaggccttctcagggatgggcggcctgggcgtggaggagacggcgctggtgtcggcc 276
           |||| ||||||||||||| | || ||||| |||||||| ||| ||||| |||||||||| 
Sbjct: 132 accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 191

                                          
Query: 277 ctgggccggtggaggaagcagccggagaagc 307
           |||| |  |||| | | ||||||||||||||
Sbjct: 192 ctggccaagtggcgcaggcagccggagaagc 222
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>dbj|AK098879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F11, full
           insert sequence
          Length = 1254

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                       
Query: 415 gagttcgcccggttcaagagcctcatggtgctgtgggcgatgcacccgtgggagcgcgac 474
           |||||| | |||||||||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct: 319 gagttctcgcggttcaagaacctgatggtgatgtgggcgatgcacccgtgggagcgcgac 378

                
Query: 475 gcgcg 479
           |||||
Sbjct: 379 gcgcg 383



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                       
Query: 217 accaaggccttctcagggatgggcggcctgggcgtggaggagacggcgctggtgtcggcc 276
           |||| ||||||||||||| | || ||||| |||||||| ||| ||||| |||||||||| 
Sbjct: 133 accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 192

                                          
Query: 277 ctgggccggtggaggaagcagccggagaagc 307
           |||| |  |||| | | ||||||||||||||
Sbjct: 193 ctggccaagtggcgcaggcagccggagaagc 223
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>dbj|AK060054.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B07, full
           insert sequence
          Length = 1284

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                       
Query: 415 gagttcgcccggttcaagagcctcatggtgctgtgggcgatgcacccgtgggagcgcgac 474
           |||||| | |||||||||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct: 318 gagttctcgcggttcaagaacctgatggtgatgtgggcgatgcacccgtgggagcgcgac 377

                
Query: 475 gcgcg 479
           |||||
Sbjct: 378 gcgcg 382



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                       
Query: 217 accaaggccttctcagggatgggcggcctgggcgtggaggagacggcgctggtgtcggcc 276
           |||| ||||||||||||| | || ||||| |||||||| ||| ||||| |||||||||| 
Sbjct: 132 accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 191

                                          
Query: 277 ctgggccggtggaggaagcagccggagaagc 307
           |||| |  |||| | | ||||||||||||||
Sbjct: 192 ctggccaagtggcgcaggcagccggagaagc 222
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>ref|XM_475176.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 439 atggtgctgtgggcgatgcacccgtgggagcgcgacgcgcg 479
           |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 286 atggtgatgtgggcgatgcacccgtgggagcgcgacgcgcg 326



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                       
Query: 217 accaaggccttctcagggatgggcggcctgggcgtggaggagacggcgctggtgtcggcc 276
           |||| ||||||||||||| | || ||||| |||||||| ||| ||||| |||||||||| 
Sbjct: 25  accagggccttctcagggctcggtggcctcggcgtggacgagccggcgatggtgtcggcg 84

                                          
Query: 277 ctgggccggtggaggaagcagccggagaagc 307
           |||| |  |||| | | ||||||||||||||
Sbjct: 85  ctggccaagtggcgcaggcagccggagaagc 115
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05,
              complete sequence
          Length = 153368

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                       
Query: 439    atggtgctgtgggcgatgcacccgtgggagcgcgacgcgcg 479
              |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 144401 atggtgatgtgggcgatgcacccgtgggagcgcgacgcgcg 144361



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                          
Query: 241    ggcctgggcgtggaggagacggcgctggtgtcggccctgggccggtggaggaagcagccg 300
              ||||| |||||||| ||| ||||| |||||||||| |||| |  |||| | | |||||||
Sbjct: 144691 ggcctcggcgtggacgagccggcgatggtgtcggcgctggccaagtggcgcaggcagccg 144632

                     
Query: 301    gagaagc 307
              |||||||
Sbjct: 144631 gagaagc 144625
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                         
Query: 439      atggtgctgtgggcgatgcacccgtgggagcgcgacgcgcg 479
                |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 18351189 atggtgatgtgggcgatgcacccgtgggagcgcgacgcgcg 18351149



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                            
Query: 241      ggcctgggcgtggaggagacggcgctggtgtcggccctgggccggtggaggaagcagccg 300
                ||||| |||||||| ||| ||||| |||||||||| |||| |  |||| | | |||||||
Sbjct: 18351479 ggcctcggcgtggacgagccggcgatggtgtcggcgctggccaagtggcgcaggcagccg 18351420

                       
Query: 301      gagaagc 307
                |||||||
Sbjct: 18351419 gagaagc 18351413
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 195     ggccgacgagcaccaggaactc 216
               ||||||||||||||||||||||
Sbjct: 1965911 ggccgacgagcaccaggaactc 1965890
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>dbj|AK108102.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-B02, full
           insert sequence
          Length = 1191

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 480 ctgggcgcaccgcgcgctgcac 501
           ||||||||||||||||||||||
Sbjct: 552 ctgggcgcaccgcgcgctgcac 573
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 262     gcgctggtgtcggccctgggcc 283
               ||||||||||||||||||||||
Sbjct: 1174868 gcgctggtgtcggccctgggcc 1174847
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>gb|AY657269.1| Synthetic construct Peudomonas aeruginosa clone FLH043823.01F
           PA4469 gene, partial cds
          Length = 450

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 113 cgtcggcgtcgcccctgcgttccag 137
           ||||||||||||||| |||||||||
Sbjct: 136 cgtcggcgtcgccccagcgttccag 112
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>gb|AE004860.1| Pseudomonas aeruginosa PAO1, section 421 of 529 of the complete
            genome
          Length = 11340

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 113  cgtcggcgtcgcccctgcgttccag 137
            ||||||||||||||| |||||||||
Sbjct: 9310 cgtcggcgtcgccccagcgttccag 9334
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>gb|U72494.1|PAU72494 Pseudomonas aeruginosa fumarase (fumC) and Mn superoxide dismutase
            (sodA) genes, complete cds
          Length = 4368

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 113  cgtcggcgtcgcccctgcgttccag 137
            ||||||||||||||| |||||||||
Sbjct: 2789 cgtcggcgtcgccccagcgttccag 2765
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>ref|XM_471225.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3972

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 ggccgccgaggagggagcag 156
           ||||||||||||||||||||
Sbjct: 3   ggccgccgaggagggagcag 22
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>ref|NM_195508.1| Oryza sativa (japonica cultivar-group) putative retroelement
           (OSJNBa0082N11.6), mRNA
          Length = 900

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 ggccgccgaggagggagcag 156
           ||||||||||||||||||||
Sbjct: 3   ggccgccgaggagggagcag 22
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>ref|NM_195753.1| Oryza sativa (japonica cultivar-group) putative polyprotein
           (OSJNBb0008A05.22), mRNA
          Length = 3798

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 ggccgccgaggagggagcag 156
           ||||||||||||||||||||
Sbjct: 3   ggccgccgaggagggagcag 22
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>ref|NM_195681.1| Oryza sativa (japonica cultivar-group) putative retroelement
           (OSJNBa0004A10.2), mRNA
          Length = 4104

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 ggccgccgaggagggagcag 156
           ||||||||||||||||||||
Sbjct: 3   ggccgccgaggagggagcag 22
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>ref|NM_195341.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0034E15.13), mRNA
          Length = 768

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 ggccgccgaggagggagcag 156
           ||||||||||||||||||||
Sbjct: 336 ggccgccgaggagggagcag 355
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>ref|XM_472106.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1668

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 ggccgccgaggagggagcag 156
           ||||||||||||||||||||
Sbjct: 3   ggccgccgaggagggagcag 22
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>ref|XM_471895.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1917

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 137 ggccgccgaggagggagcag 156
           ||||||||||||||||||||
Sbjct: 175 ggccgccgaggagggagcag 194
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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
               sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 288     gaggaagcagccggagaagcgggc 311
               ||||||||||||||||| ||||||
Sbjct: 1035190 gaggaagcagccggagaggcgggc 1035213
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>gb|AC133004.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0046F10, complete sequence
          Length = 184041

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 25766 ggccgccgaggagggagcag 25785
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>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBa0050N08, complete sequence
          Length = 144593

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  ggccgccgaggagggagcag 156
            ||||||||||||||||||||
Sbjct: 5819 ggccgccgaggagggagcag 5800
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 137      ggccgccgaggagggagcag 156
                ||||||||||||||||||||
Sbjct: 19088327 ggccgccgaggagggagcag 19088308
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>gb|AC135597.5| Oryza sativa chromosome 3 BAC OSJNBa0034E08 genomic sequence, complete
             sequence
          Length = 171437

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 69250 ggccgccgaggagggagcag 69269
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 130     cgttccaggccgccgaggag 149
               ||||||||||||||||||||
Sbjct: 3865066 cgttccaggccgccgaggag 3865047
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>ref|XM_569652.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNC03270) partial mRNA
          Length = 4742

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 288 gaggaagcagccggagaagcgggc 311
           ||||||||||||||||| ||||||
Sbjct: 932 gaggaagcagccggagaggcgggc 909
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>emb|BX842603.2|OSJN00300 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1159F04, complete
             sequence
          Length = 158330

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 17032 ggccgccgaggagggagcag 17013
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>gb|AC105377.12| Oryza sativa chromosome 10 BAC OSJNBa0034E15 genomic sequence, complete
             sequence
          Length = 100285

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 69939 ggccgccgaggagggagcag 69958
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>emb|BX569684.2|OSJN00290 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0046K02,
             complete sequence
          Length = 109366

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 98528 ggccgccgaggagggagcag 98509
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>emb|AL731635.3|OSJN00277 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0016B03,
             complete sequence
          Length = 125780

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 96610 ggccgccgaggagggagcag 96591
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>gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0008A05, complete sequence
          Length = 124366

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 56153 ggccgccgaggagggagcag 56134
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>gb|AF257215.2| Brevibacterium sp. HCU cyclohexanone oxidation gene cluster 2,
            complete sequence
          Length = 11471

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 106  ccaccggcgtcggcgtcgcc 125
            ||||||||||||||||||||
Sbjct: 1042 ccaccggcgtcggcgtcgcc 1061
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>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OSJNBb0058B20 from chromosome 10, complete sequence
          Length = 156232

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 13947 ggccgccgaggagggagcag 13966
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>gb|AC098682.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0004A10, from chromosome 10, complete sequence
          Length = 144271

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 11863 ggccgccgaggagggagcag 11844
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>gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0082N11, from chromosome 10, complete sequence
          Length = 183345

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 16747 ggccgccgaggagggagcag 16766
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>gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete
              sequence
          Length = 150465

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    ggccgccgaggagggagcag 156
              ||||||||||||||||||||
Sbjct: 106618 ggccgccgaggagggagcag 106599
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>gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0065C16, from Chromosome 10, complete sequence
          Length = 146391

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    ggccgccgaggagggagcag 156
              ||||||||||||||||||||
Sbjct: 101407 ggccgccgaggagggagcag 101388
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 137      ggccgccgaggagggagcag 156
                ||||||||||||||||||||
Sbjct: 17535260 ggccgccgaggagggagcag 17535279



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 137      ggccgccgaggagggagcag 156
                ||||||||||||||||||||
Sbjct: 15556975 ggccgccgaggagggagcag 15556956



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 2371291 ggccgccgaggagggagcag 2371272
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 137      ggccgccgaggagggagcag 156
                ||||||||||||||||||||
Sbjct: 11151844 ggccgccgaggagggagcag 11151825
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 137      ggccgccgaggagggagcag 156
                ||||||||||||||||||||
Sbjct: 12906903 ggccgccgaggagggagcag 12906884



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 8851546 ggccgccgaggagggagcag 8851527



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 8419383 ggccgccgaggagggagcag 8419402



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 7382883 ggccgccgaggagggagcag 7382902



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 6272381 ggccgccgaggagggagcag 6272400
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 7522820 ggccgccgaggagggagcag 7522839
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 6889107 ggccgccgaggagggagcag 6889126



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 6576858 ggccgccgaggagggagcag 6576839
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 137      ggccgccgaggagggagcag 156
                ||||||||||||||||||||
Sbjct: 19082368 ggccgccgaggagggagcag 19082349
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 137      ggccgccgaggagggagcag 156
                ||||||||||||||||||||
Sbjct: 15226538 ggccgccgaggagggagcag 15226519
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 137      ggccgccgaggagggagcag 156
                ||||||||||||||||||||
Sbjct: 37432791 ggccgccgaggagggagcag 37432772
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>ref|XM_230814.3| PREDICTED: Rattus norvegicus chromodomain helicase DNA binding
           protein 6 (predicted) (Chd6_predicted), mRNA
          Length = 10176

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 323 ggggcttcccgggcttcttcacgc 346
           ||||||||| ||||||||||||||
Sbjct: 646 ggggcttccggggcttcttcacgc 623
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>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0505D12
          Length = 146951

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 27328 ggccgccgaggagggagcag 27309
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>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0423B08
          Length = 151490

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    ggccgccgaggagggagcag 156
              ||||||||||||||||||||
Sbjct: 144825 ggccgccgaggagggagcag 144806
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    cggcgtcggcgtcgcccctg 129
              ||||||||||||||||||||
Sbjct: 425842 cggcgtcggcgtcgcccctg 425823
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>dbj|AP005916.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0066M12
          Length = 162198

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 31235 ggccgccgaggagggagcag 31254
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>dbj|AP005837.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0024K20
          Length = 165041

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    ggccgccgaggagggagcag 156
              ||||||||||||||||||||
Sbjct: 126624 ggccgccgaggagggagcag 126643
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>dbj|AP005608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0008C07
          Length = 146008

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    ggccgccgaggagggagcag 156
              ||||||||||||||||||||
Sbjct: 110313 ggccgccgaggagggagcag 110294
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>dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0002E10
          Length = 140486

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    ggccgccgaggagggagcag 156
              ||||||||||||||||||||
Sbjct: 139826 ggccgccgaggagggagcag 139845
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>dbj|AP005696.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0063K04
          Length = 158792

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 37659 ggccgccgaggagggagcag 37640
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>dbj|AP006615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:B1165C09
          Length = 202985

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 137  ggccgccgaggagggagcag 156
            ||||||||||||||||||||
Sbjct: 7155 ggccgccgaggagggagcag 7174
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>dbj|AP005488.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0003D23
          Length = 151604

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 10205 ggccgccgaggagggagcag 10186
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>emb|AL442108.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124E07, complete
              sequence
          Length = 127181

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    ggccgccgaggagggagcag 156
              ||||||||||||||||||||
Sbjct: 119819 ggccgccgaggagggagcag 119800
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>gb|U66800.1|MSU66800 Mycobacterium smegmatis 3-ketoacyl reductase (fabG) gene, complete
           cds
          Length = 918

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 468 gcgcgacgcgcgctgggcgcaccg 491
           ||||||||| ||||||||||||||
Sbjct: 494 gcgcgacgcccgctgggcgcaccg 471
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 107     caccggcgtcggcgtcgccc 126
               ||||||||||||||||||||
Sbjct: 4563019 caccggcgtcggcgtcgccc 4563038
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 137      ggccgccgaggagggagcag 156
                ||||||||||||||||||||
Sbjct: 12914243 ggccgccgaggagggagcag 12914224



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 8856685 ggccgccgaggagggagcag 8856666



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 8424482 ggccgccgaggagggagcag 8424501



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 7387082 ggccgccgaggagggagcag 7387101



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 137     ggccgccgaggagggagcag 156
               ||||||||||||||||||||
Sbjct: 6273967 ggccgccgaggagggagcag 6273986
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 137      ggccgccgaggagggagcag 156
                ||||||||||||||||||||
Sbjct: 11231033 ggccgccgaggagggagcag 11231014
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>emb|AL662983.3|OSJN00181 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081G05,
             complete sequence
          Length = 173950

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   ggccgccgaggagggagcag 156
             ||||||||||||||||||||
Sbjct: 16000 ggccgccgaggagggagcag 16019


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,965,259
Number of Sequences: 3902068
Number of extensions: 2965259
Number of successful extensions: 63646
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62488
Number of HSP's gapped (non-prelim): 1158
length of query: 504
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 482
effective length of database: 17,147,199,772
effective search space: 8264950290104
effective search space used: 8264950290104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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