ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DYC1_CAEEL (Q8STF6) Dystrophin-like protein 1 (Dyb-1-binding and... 29 3.7
2LAD1_HUMAN (O00515) Ladinin 1 (Lad-1) (120 kDa linear IgA bullou... 29 3.7
3SMCA4_HUMAN (P51532) Probable global transcription activator SNF... 29 4.9

>DYC1_CAEEL (Q8STF6) Dystrophin-like protein 1 (Dyb-1-binding and CAPON-related|
           protein)
          Length = 887

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 208 PAGSEQMPARNS-PIADHVSIGRRGERPPPRADLRV 104
           P  SE  P RN+ P + + S+ RRG  PPP  D+ +
Sbjct: 808 PEPSEMDPNRNNLPSSTNSSMKRRGFLPPPNTDVEI 843



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>LAD1_HUMAN (O00515) Ladinin 1 (Lad-1) (120 kDa linear IgA bullous dermatosis|
           antigen) (97 kDa linear IgA bullous dermatosis antigen)
           (Linear IgA disease antigen homolog) (LadA)
          Length = 517

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 220 SGGSPAGSEQMPARNSPIADHVSIGRRGERPPPRADLRVP 101
           SGGSPA +++   R  P  +  S+ ++G   PP    R+P
Sbjct: 298 SGGSPATTKEQRGRALPGKNLPSLAKQGASDPPTVASRLP 337



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>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC|
           3.6.1.-) (ATP-dependent helicase SMARCA4) (SNF2-beta)
           (BRG-1 protein) (Mitotic growth and transcription
           activator) (Brahma protein homolog 1) (SWI/SNF-related
           matrix-associated actin
          Length = 1647

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 193 QMPARNSPIADHVSIGRRGERPPPRADLRVPS 98
           +M AR  P+ DH+ +  +G+RP P    ++P+
Sbjct: 188 KMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.132    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,564,984
Number of Sequences: 219361
Number of extensions: 603018
Number of successful extensions: 1200
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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