Clone Name | bart09g10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 119 bits (60), Expect = 5e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 83 ccgccatggaccgtctgcgggcggggagccccgtctacgggcggcagcgcagtgggagca 142 ||||||||||||| || || ||||||||||||||||||||||||||||| || || |||| Sbjct: 40722780 ccgccatggaccgcctccgcgcggggagccccgtctacgggcggcagcggagcggcagca 40722721 Query: 143 gcacgggctccacctccccgggcggcgt 170 ||||||||||| |||||||||||||||| Sbjct: 40722720 gcacgggctcctcctccccgggcggcgt 40722693
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12 Length = 167881 Score = 119 bits (60), Expect = 5e-24 Identities = 81/88 (92%) Strand = Plus / Minus Query: 83 ccgccatggaccgtctgcgggcggggagccccgtctacgggcggcagcgcagtgggagca 142 ||||||||||||| || || ||||||||||||||||||||||||||||| || || |||| Sbjct: 25426 ccgccatggaccgcctccgcgcggggagccccgtctacgggcggcagcggagcggcagca 25367 Query: 143 gcacgggctccacctccccgggcggcgt 170 ||||||||||| |||||||||||||||| Sbjct: 25366 gcacgggctcctcctccccgggcggcgt 25339
>dbj|AK120714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A11, full insert sequence Length = 2214 Score = 119 bits (60), Expect = 5e-24 Identities = 81/88 (92%) Strand = Plus / Plus Query: 83 ccgccatggaccgtctgcgggcggggagccccgtctacgggcggcagcgcagtgggagca 142 ||||||||||||| || || ||||||||||||||||||||||||||||| || || |||| Sbjct: 88 ccgccatggaccgcctccgcgcggggagccccgtctacgggcggcagcggagcggcagca 147 Query: 143 gcacgggctccacctccccgggcggcgt 170 ||||||||||| |||||||||||||||| Sbjct: 148 gcacgggctcctcctccccgggcggcgt 175
>ref|NM_189998.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1449 Score = 109 bits (55), Expect = 4e-21 Identities = 76/83 (91%) Strand = Plus / Plus Query: 88 atggaccgtctgcgggcggggagccccgtctacgggcggcagcgcagtgggagcagcacg 147 |||||||| || || ||||||||||||||||||||||||||||| || || ||||||||| Sbjct: 1 atggaccgcctccgcgcggggagccccgtctacgggcggcagcggagcggcagcagcacg 60 Query: 148 ggctccacctccccgggcggcgt 170 |||||| |||||||||||||||| Sbjct: 61 ggctcctcctccccgggcggcgt 83
>gb|AC012098.9|AC012098 Drosophila melanogaster, chromosome X, region 17A-17B, BAC clone BACR03K10, complete sequence Length = 188489 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 136 gggagcagcacgggctccacct 157 |||||||||||||||||||||| Sbjct: 106493 gggagcagcacgggctccacct 106514
>gb|AE003509.5| Drosophila melanogaster chromosome X, section 61 of 74 of the complete sequence Length = 315109 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 136 gggagcagcacgggctccacct 157 |||||||||||||||||||||| Sbjct: 30505 gggagcagcacgggctccacct 30526
>ref|XM_956675.1| Neurospora crassa OR74A hypothetical protein (NCU08689.1) partial mRNA Length = 3573 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 cgggctccacctccccgggcg 166 ||||||||||||||||||||| Sbjct: 3157 cgggctccacctccccgggcg 3137
>ref|XM_329812.1| Neurospora crassa OR74A hypothetical protein (NCU08689.1) partial mRNA Length = 3573 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 cgggctccacctccccgggcg 166 ||||||||||||||||||||| Sbjct: 3157 cgggctccacctccccgggcg 3137
>ref|XM_481759.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1149 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 103 gcggggagccccgtctacgggcggcagc 130 |||||||||| ||| ||||||||||||| Sbjct: 102 gcggggagcctcgtatacgggcggcagc 75
>ref|XM_474300.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1173 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 149 cgccgtcgccggcgtcgggg 168
>gb|BT016853.1| Zea mays clone Contig686 mRNA sequence Length = 1662 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ggcgccgtcgccggcgtcgg 242 |||||||||||||||||||| Sbjct: 1568 ggcgccgtcgccggcgtcgg 1587
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 cggcgagcccgccatggaccgtct 98 |||||||||||||||| ||||||| Sbjct: 758638 cggcgagcccgccatgcaccgtct 758661
>gb|DQ421814.1| Oryza meridionalis voucher IRGC 101145 shattering (sh4) gene, partial cds Length = 1648 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 884 cgccgtcgccggcgtcgggg 903
>gb|DQ421813.1| Oryza glumipatula voucher IRGC 105672 shattering (sh4) gene, partial cds Length = 1639 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 884 cgccgtcgccggcgtcgggg 903
>gb|DQ421812.1| Oryza barthii voucher IRGC 101196 shattering (sh4) gene, partial cds Length = 1650 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 883 cgccgtcgccggcgtcgggg 902
>gb|DQ383414.1| Oryza sativa (indica cultivar-group) voucher IRGC 50490 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383413.1| Oryza sativa (japonica cultivar-group) voucher IRGC 38994 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383412.1| Oryza sativa (indica cultivar-group) voucher IRGC 6294 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383411.2| Oryza sativa (japonica cultivar-group) cultivar Taipei 309 shattering protein (sh4) gene, partial cds Length = 1650 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 883 cgccgtcgccggcgtcgggg 902
>gb|DQ383410.1| Oryza sativa (japonica cultivar-group) cultivar Au8234 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383409.1| Oryza sativa (japonica cultivar-group) cultivar Taizhong 65 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383408.1| Oryza sativa (japonica cultivar-group) cultivar BL 377 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383407.1| Oryza sativa (indica cultivar-group) cultivar BL 272 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383406.1| Oryza sativa (japonica cultivar-group) cultivar PI 392542 shattering protein (sh4) gene, partial cds Length = 1650 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 883 cgccgtcgccggcgtcgggg 902
>gb|DQ383405.1| Oryza sativa (japonica cultivar-group) cultivar PI 392539 shattering protein (sh4) gene, partial cds Length = 1650 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 883 cgccgtcgccggcgtcgggg 902
>gb|DQ383404.1| Oryza sativa (japonica cultivar-group) cultivar BL 446 shattering protein (sh4) gene, partial cds Length = 1650 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 883 cgccgtcgccggcgtcgggg 902
>gb|DQ383403.1| Oryza sativa (indica cultivar-group) voucher IRGC 58278 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383402.1| Oryza sativa (indica cultivar-group) voucher IRGC 9148 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383401.1| Oryza sativa (japonica cultivar-group) voucher IRGC 1715 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383400.1| Oryza nivara voucher IRGC 103422 shattering protein (sh4) gene, partial cds Length = 1645 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 887 cgccgtcgccggcgtcgggg 906
>gb|DQ383399.1| Oryza rufipogon voucher IRGC 80534 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383398.1| Oryza rufipogon voucher IRGC 80529 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383397.1| Oryza rufipogon voucher IRGC 106122 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383396.1| Oryza rufipogon voucher IRGC 105953 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383395.1| Oryza rufipogon voucher IRGC 104311 shattering protein (sh4) gene, partial cds Length = 1638 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 889 cgccgtcgccggcgtcgggg 908
>gb|DQ383394.1| Oryza nivara voucher IRGC 106345 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383393.1| Oryza nivara voucher IRGC 106185 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383392.1| Oryza nivara voucher IRGC 105894 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383391.1| Oryza nivara voucher IRGC 105867 shattering protein (sh4) gene, partial cds Length = 1639 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 890 cgccgtcgccggcgtcgggg 909
>gb|DQ383390.1| Oryza nivara voucher IRGC 105859 shattering protein (sh4) gene, partial cds Length = 1643 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 894 cgccgtcgccggcgtcgggg 913
>gb|DQ383389.1| Oryza nivara voucher IRGC 105801 shattering protein (sh4) gene, partial cds Length = 1639 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 887 cgccgtcgccggcgtcgggg 906
>gb|DQ383388.1| Oryza nivara voucher IRGC 105742 shattering protein (sh4) gene, partial cds Length = 1638 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 889 cgccgtcgccggcgtcgggg 908
>gb|DQ383387.1| Oryza nivara voucher IRGC 105706 shattering protein (sh4) gene, partial cds Length = 1658 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 888 cgccgtcgccggcgtcgggg 907
>gb|DQ383386.1| Oryza nivara voucher IRGC 105705 shattering protein (sh4) gene, partial cds Length = 1658 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 888 cgccgtcgccggcgtcgggg 907
>gb|DQ383385.1| Oryza nivara voucher IRGC 105703 shattering protein (sh4) gene, partial cds Length = 1658 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 888 cgccgtcgccggcgtcgggg 907
>gb|DQ383384.1| Oryza nivara voucher IRGC 105702 shattering protein (sh4) gene, partial cds Length = 1658 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 888 cgccgtcgccggcgtcgggg 907
>gb|DQ383383.1| Oryza nivara voucher IRGC 105454 shattering protein (sh4) gene, partial cds Length = 1646 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 888 cgccgtcgccggcgtcgggg 907
>gb|DQ383382.1| Oryza nivara voucher IRGC 105417 shattering protein (sh4) gene, partial cds Length = 1646 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 888 cgccgtcgccggcgtcgggg 907
>gb|DQ383381.1| Oryza nivara voucher IRGC 105391 shattering protein (sh4) gene, partial cds Length = 1635 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383380.1| Oryza nivara voucher IRGC 105319 shattering protein (sh4) gene, partial cds Length = 1644 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 877 cgccgtcgccggcgtcgggg 896
>gb|DQ383379.1| Oryza nivara voucher IRGC 104697 shattering protein (sh4) gene, partial cds Length = 1656 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 889 cgccgtcgccggcgtcgggg 908
>gb|DQ383378.1| Oryza nivara voucher IRGC 104687 shattering protein (sh4) gene, partial cds Length = 1657 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 887 cgccgtcgccggcgtcgggg 906
>gb|DQ383377.1| Oryza nivara voucher IRGC 103838 shattering protein (sh4) gene, partial cds Length = 1653 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 886 cgccgtcgccggcgtcgggg 905
>gb|DQ383376.1| Oryza nivara voucher IRGC 101967 shattering protein (sh4) gene, partial cds Length = 1643 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 894 cgccgtcgccggcgtcgggg 913
>gb|DQ383375.1| Oryza nivara voucher IRGC 104658 shattering protein (sh4) gene, partial cds Length = 1637 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 888 cgccgtcgccggcgtcgggg 907
>gb|DQ383374.1| Oryza sativa (indica cultivar-group) cultivar CL 16 shattering protein (sh4) mRNA, complete cds Length = 1173 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 149 cgccgtcgccggcgtcgggg 168
>gb|DQ383373.1| Oryza sativa (indica cultivar-group) cultivar CL 16 shattering protein (sh4) gene, complete cds Length = 5075 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 2701 cgccgtcgccggcgtcgggg 2720
>gb|DQ383372.1| Oryza nivara voucher IRGC 80470 shattering protein (sh4) mRNA, complete cds Length = 1155 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 149 cgccgtcgccggcgtcgggg 168
>gb|DQ383371.1| Oryza nivara voucher IRGC 80470 shattering protein (sh4) gene, complete cds Length = 5064 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 2710 cgccgtcgccggcgtcgggg 2729
>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12, complete sequence Length = 190432 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 178263 cgccgtcgccggcgtcgggg 178244
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ccgcgtcgtgctgccgcgcg 24 |||||||||||||||||||| Sbjct: 2940131 ccgcgtcgtgctgccgcgcg 2940112
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 34266881 cgccgtcgccggcgtcgggg 34266862
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 103 gcggggagccccgtctacgggcggcagc 130 |||||||||| ||| ||||||||||||| Sbjct: 15308872 gcggggagcctcgtatacgggcggcagc 15308845
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tctccgcgtcgtgctgccgc 21 |||||||||||||||||||| Sbjct: 34222765 tctccgcgtcgtgctgccgc 34222746
>dbj|AP005491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0062G05 Length = 152802 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 103 gcggggagccccgtctacgggcggcagc 130 |||||||||| ||| ||||||||||||| Sbjct: 94503 gcggggagcctcgtatacgggcggcagc 94476
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 ccgcgtcgtgctgccgcgcg 24 |||||||||||||||||||| Sbjct: 8373313 ccgcgtcgtgctgccgcgcg 8373294
>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0032L17 Length = 165808 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tctccgcgtcgtgctgccgc 21 |||||||||||||||||||| Sbjct: 150279 tctccgcgtcgtgctgccgc 150260
>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0689B12 Length = 154745 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tctccgcgtcgtgctgccgc 21 |||||||||||||||||||| Sbjct: 58038 tctccgcgtcgtgctgccgc 58019
>ref|XM_318376.2| Anopheles gambiae str. PEST ENSANGP00000002726 (ENSANGG00000002259), partial mRNA Length = 3549 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 ggagcagcacgggctccacc 156 |||||||||||||||||||| Sbjct: 2304 ggagcagcacgggctccacc 2323
>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete sequence Length = 95419 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgccgtcgccggcgtcgggg 244 |||||||||||||||||||| Sbjct: 49493 cgccgtcgccggcgtcgggg 49474
>gb|AC169087.3| Gallus gallus BAC clone CH261-119D18 from chromosome ul, complete sequence Length = 225652 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 gcagcgcagtgggagcagca 145 |||||||||||||||||||| Sbjct: 50578 gcagcgcagtgggagcagca 50559 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,167,663 Number of Sequences: 3902068 Number of extensions: 1167663 Number of successful extensions: 28594 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28306 Number of HSP's gapped (non-prelim): 288 length of query: 262 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 240 effective length of database: 17,147,199,772 effective search space: 4115327945280 effective search space used: 4115327945280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)