ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 119 5e-24
2dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic D... 119 5e-24
3dbj|AK120714.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 5e-24
4ref|NM_189998.1| Oryza sativa (japonica cultivar-group), predic... 109 4e-21
5gb|AC012098.9|AC012098 Drosophila melanogaster, chromosome X, re... 44 0.22
6gb|AE003509.5| Drosophila melanogaster chromosome X, section 61 ... 44 0.22
7ref|XM_956675.1| Neurospora crassa OR74A hypothetical protein (N... 42 0.86
8ref|XM_329812.1| Neurospora crassa OR74A hypothetical protein (N... 42 0.86
9ref|XM_481759.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.4
10ref|XM_474300.1| Oryza sativa (japonica cultivar-group), predic... 40 3.4
11gb|BT016853.1| Zea mays clone Contig686 mRNA sequence 40 3.4
12gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 3.4
13gb|DQ421814.1| Oryza meridionalis voucher IRGC 101145 shattering... 40 3.4
14gb|DQ421813.1| Oryza glumipatula voucher IRGC 105672 shattering ... 40 3.4
15gb|DQ421812.1| Oryza barthii voucher IRGC 101196 shattering (sh4... 40 3.4
16gb|DQ383414.1| Oryza sativa (indica cultivar-group) voucher IRGC... 40 3.4
17gb|DQ383413.1| Oryza sativa (japonica cultivar-group) voucher IR... 40 3.4
18gb|DQ383412.1| Oryza sativa (indica cultivar-group) voucher IRGC... 40 3.4
19gb|DQ383411.2| Oryza sativa (japonica cultivar-group) cultivar T... 40 3.4
20gb|DQ383410.1| Oryza sativa (japonica cultivar-group) cultivar A... 40 3.4
21gb|DQ383409.1| Oryza sativa (japonica cultivar-group) cultivar T... 40 3.4
22gb|DQ383408.1| Oryza sativa (japonica cultivar-group) cultivar B... 40 3.4
23gb|DQ383407.1| Oryza sativa (indica cultivar-group) cultivar BL ... 40 3.4
24gb|DQ383406.1| Oryza sativa (japonica cultivar-group) cultivar P... 40 3.4
25gb|DQ383405.1| Oryza sativa (japonica cultivar-group) cultivar P... 40 3.4
26gb|DQ383404.1| Oryza sativa (japonica cultivar-group) cultivar B... 40 3.4
27gb|DQ383403.1| Oryza sativa (indica cultivar-group) voucher IRGC... 40 3.4
28gb|DQ383402.1| Oryza sativa (indica cultivar-group) voucher IRGC... 40 3.4
29gb|DQ383401.1| Oryza sativa (japonica cultivar-group) voucher IR... 40 3.4
30gb|DQ383400.1| Oryza nivara voucher IRGC 103422 shattering prote... 40 3.4
31gb|DQ383399.1| Oryza rufipogon voucher IRGC 80534 shattering pro... 40 3.4
32gb|DQ383398.1| Oryza rufipogon voucher IRGC 80529 shattering pro... 40 3.4
33gb|DQ383397.1| Oryza rufipogon voucher IRGC 106122 shattering pr... 40 3.4
34gb|DQ383396.1| Oryza rufipogon voucher IRGC 105953 shattering pr... 40 3.4
35gb|DQ383395.1| Oryza rufipogon voucher IRGC 104311 shattering pr... 40 3.4
36gb|DQ383394.1| Oryza nivara voucher IRGC 106345 shattering prote... 40 3.4
37gb|DQ383393.1| Oryza nivara voucher IRGC 106185 shattering prote... 40 3.4
38gb|DQ383392.1| Oryza nivara voucher IRGC 105894 shattering prote... 40 3.4
39gb|DQ383391.1| Oryza nivara voucher IRGC 105867 shattering prote... 40 3.4
40gb|DQ383390.1| Oryza nivara voucher IRGC 105859 shattering prote... 40 3.4
41gb|DQ383389.1| Oryza nivara voucher IRGC 105801 shattering prote... 40 3.4
42gb|DQ383388.1| Oryza nivara voucher IRGC 105742 shattering prote... 40 3.4
43gb|DQ383387.1| Oryza nivara voucher IRGC 105706 shattering prote... 40 3.4
44gb|DQ383386.1| Oryza nivara voucher IRGC 105705 shattering prote... 40 3.4
45gb|DQ383385.1| Oryza nivara voucher IRGC 105703 shattering prote... 40 3.4
46gb|DQ383384.1| Oryza nivara voucher IRGC 105702 shattering prote... 40 3.4
47gb|DQ383383.1| Oryza nivara voucher IRGC 105454 shattering prote... 40 3.4
48gb|DQ383382.1| Oryza nivara voucher IRGC 105417 shattering prote... 40 3.4
49gb|DQ383381.1| Oryza nivara voucher IRGC 105391 shattering prote... 40 3.4
50gb|DQ383380.1| Oryza nivara voucher IRGC 105319 shattering prote... 40 3.4
51gb|DQ383379.1| Oryza nivara voucher IRGC 104697 shattering prote... 40 3.4
52gb|DQ383378.1| Oryza nivara voucher IRGC 104687 shattering prote... 40 3.4
53gb|DQ383377.1| Oryza nivara voucher IRGC 103838 shattering prote... 40 3.4
54gb|DQ383376.1| Oryza nivara voucher IRGC 101967 shattering prote... 40 3.4
55gb|DQ383375.1| Oryza nivara voucher IRGC 104658 shattering prote... 40 3.4
56gb|DQ383374.1| Oryza sativa (indica cultivar-group) cultivar CL ... 40 3.4
57gb|DQ383373.1| Oryza sativa (indica cultivar-group) cultivar CL ... 40 3.4
58gb|DQ383372.1| Oryza nivara voucher IRGC 80470 shattering protei... 40 3.4
59gb|DQ383371.1| Oryza nivara voucher IRGC 80470 shattering protei... 40 3.4
60emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 40 3.4
61gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 3.4
62dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
63dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
64dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
65dbj|AP005491.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
66dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 3.4
67dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
68dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
69ref|XM_318376.2| Anopheles gambiae str. PEST ENSANGP00000002726 ... 40 3.4
70emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.4
71gb|AC169087.3| Gallus gallus BAC clone CH261-119D18 from chromos... 40 3.4 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  119 bits (60), Expect = 5e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 83       ccgccatggaccgtctgcgggcggggagccccgtctacgggcggcagcgcagtgggagca 142
                ||||||||||||| || || ||||||||||||||||||||||||||||| || || ||||
Sbjct: 40722780 ccgccatggaccgcctccgcgcggggagccccgtctacgggcggcagcggagcggcagca 40722721

                                            
Query: 143      gcacgggctccacctccccgggcggcgt 170
                ||||||||||| ||||||||||||||||
Sbjct: 40722720 gcacgggctcctcctccccgggcggcgt 40722693
to top
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0052O12
          Length = 167881

 Score =  119 bits (60), Expect = 5e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 83    ccgccatggaccgtctgcgggcggggagccccgtctacgggcggcagcgcagtgggagca 142
             ||||||||||||| || || ||||||||||||||||||||||||||||| || || ||||
Sbjct: 25426 ccgccatggaccgcctccgcgcggggagccccgtctacgggcggcagcggagcggcagca 25367

                                         
Query: 143   gcacgggctccacctccccgggcggcgt 170
             ||||||||||| ||||||||||||||||
Sbjct: 25366 gcacgggctcctcctccccgggcggcgt 25339
to top
>dbj|AK120714.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A11, full
           insert sequence
          Length = 2214

 Score =  119 bits (60), Expect = 5e-24
 Identities = 81/88 (92%)
 Strand = Plus / Plus

                                                                       
Query: 83  ccgccatggaccgtctgcgggcggggagccccgtctacgggcggcagcgcagtgggagca 142
           ||||||||||||| || || ||||||||||||||||||||||||||||| || || ||||
Sbjct: 88  ccgccatggaccgcctccgcgcggggagccccgtctacgggcggcagcggagcggcagca 147

                                       
Query: 143 gcacgggctccacctccccgggcggcgt 170
           ||||||||||| ||||||||||||||||
Sbjct: 148 gcacgggctcctcctccccgggcggcgt 175
to top
>ref|NM_189998.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1449

 Score =  109 bits (55), Expect = 4e-21
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                       
Query: 88  atggaccgtctgcgggcggggagccccgtctacgggcggcagcgcagtgggagcagcacg 147
           |||||||| || || ||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 1   atggaccgcctccgcgcggggagccccgtctacgggcggcagcggagcggcagcagcacg 60

                                  
Query: 148 ggctccacctccccgggcggcgt 170
           |||||| ||||||||||||||||
Sbjct: 61  ggctcctcctccccgggcggcgt 83
to top
>gb|AC012098.9|AC012098 Drosophila melanogaster, chromosome X, region 17A-17B, BAC clone
              BACR03K10, complete sequence
          Length = 188489

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 136    gggagcagcacgggctccacct 157
              ||||||||||||||||||||||
Sbjct: 106493 gggagcagcacgggctccacct 106514
to top
>gb|AE003509.5| Drosophila melanogaster chromosome X, section 61 of 74 of the complete
             sequence
          Length = 315109

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 136   gggagcagcacgggctccacct 157
             ||||||||||||||||||||||
Sbjct: 30505 gggagcagcacgggctccacct 30526
to top
>ref|XM_956675.1| Neurospora crassa OR74A hypothetical protein (NCU08689.1) partial
            mRNA
          Length = 3573

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 146  cgggctccacctccccgggcg 166
            |||||||||||||||||||||
Sbjct: 3157 cgggctccacctccccgggcg 3137
to top
>ref|XM_329812.1| Neurospora crassa OR74A hypothetical protein (NCU08689.1) partial
            mRNA
          Length = 3573

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 146  cgggctccacctccccgggcg 166
            |||||||||||||||||||||
Sbjct: 3157 cgggctccacctccccgggcg 3137
to top
>ref|XM_481759.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1149

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 103 gcggggagccccgtctacgggcggcagc 130
           |||||||||| ||| |||||||||||||
Sbjct: 102 gcggggagcctcgtatacgggcggcagc 75
to top
>ref|XM_474300.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1173

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 149 cgccgtcgccggcgtcgggg 168
to top
>gb|BT016853.1| Zea mays clone Contig686 mRNA sequence
          Length = 1662

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  ggcgccgtcgccggcgtcgg 242
            ||||||||||||||||||||
Sbjct: 1568 ggcgccgtcgccggcgtcgg 1587
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     cggcgagcccgccatggaccgtct 98
              |||||||||||||||| |||||||
Sbjct: 758638 cggcgagcccgccatgcaccgtct 758661
to top
>gb|DQ421814.1| Oryza meridionalis voucher IRGC 101145 shattering (sh4) gene,
           partial cds
          Length = 1648

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 884 cgccgtcgccggcgtcgggg 903
to top
>gb|DQ421813.1| Oryza glumipatula voucher IRGC 105672 shattering (sh4) gene,
           partial cds
          Length = 1639

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 884 cgccgtcgccggcgtcgggg 903
to top
>gb|DQ421812.1| Oryza barthii voucher IRGC 101196 shattering (sh4) gene, partial
           cds
          Length = 1650

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 883 cgccgtcgccggcgtcgggg 902
to top
>gb|DQ383414.1| Oryza sativa (indica cultivar-group) voucher IRGC 50490 shattering
           protein (sh4) gene, partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383413.1| Oryza sativa (japonica cultivar-group) voucher IRGC 38994
           shattering protein (sh4) gene, partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383412.1| Oryza sativa (indica cultivar-group) voucher IRGC 6294 shattering
           protein (sh4) gene, partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383411.2| Oryza sativa (japonica cultivar-group) cultivar Taipei 309
           shattering protein (sh4) gene, partial cds
          Length = 1650

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 883 cgccgtcgccggcgtcgggg 902
to top
>gb|DQ383410.1| Oryza sativa (japonica cultivar-group) cultivar Au8234 shattering
           protein (sh4) gene, partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383409.1| Oryza sativa (japonica cultivar-group) cultivar Taizhong 65
           shattering protein (sh4) gene, partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383408.1| Oryza sativa (japonica cultivar-group) cultivar BL 377 shattering
           protein (sh4) gene, partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383407.1| Oryza sativa (indica cultivar-group) cultivar BL 272 shattering
           protein (sh4) gene, partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383406.1| Oryza sativa (japonica cultivar-group) cultivar PI 392542
           shattering protein (sh4) gene, partial cds
          Length = 1650

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 883 cgccgtcgccggcgtcgggg 902
to top
>gb|DQ383405.1| Oryza sativa (japonica cultivar-group) cultivar PI 392539
           shattering protein (sh4) gene, partial cds
          Length = 1650

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 883 cgccgtcgccggcgtcgggg 902
to top
>gb|DQ383404.1| Oryza sativa (japonica cultivar-group) cultivar BL 446 shattering
           protein (sh4) gene, partial cds
          Length = 1650

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 883 cgccgtcgccggcgtcgggg 902
to top
>gb|DQ383403.1| Oryza sativa (indica cultivar-group) voucher IRGC 58278 shattering
           protein (sh4) gene, partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383402.1| Oryza sativa (indica cultivar-group) voucher IRGC 9148 shattering
           protein (sh4) gene, partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383401.1| Oryza sativa (japonica cultivar-group) voucher IRGC 1715 shattering
           protein (sh4) gene, partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383400.1| Oryza nivara voucher IRGC 103422 shattering protein (sh4) gene,
           partial cds
          Length = 1645

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 887 cgccgtcgccggcgtcgggg 906
to top
>gb|DQ383399.1| Oryza rufipogon voucher IRGC 80534 shattering protein (sh4) gene,
           partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383398.1| Oryza rufipogon voucher IRGC 80529 shattering protein (sh4) gene,
           partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383397.1| Oryza rufipogon voucher IRGC 106122 shattering protein (sh4) gene,
           partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383396.1| Oryza rufipogon voucher IRGC 105953 shattering protein (sh4) gene,
           partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383395.1| Oryza rufipogon voucher IRGC 104311 shattering protein (sh4) gene,
           partial cds
          Length = 1638

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 889 cgccgtcgccggcgtcgggg 908
to top
>gb|DQ383394.1| Oryza nivara voucher IRGC 106345 shattering protein (sh4) gene,
           partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383393.1| Oryza nivara voucher IRGC 106185 shattering protein (sh4) gene,
           partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383392.1| Oryza nivara voucher IRGC 105894 shattering protein (sh4) gene,
           partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383391.1| Oryza nivara voucher IRGC 105867 shattering protein (sh4) gene,
           partial cds
          Length = 1639

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 890 cgccgtcgccggcgtcgggg 909
to top
>gb|DQ383390.1| Oryza nivara voucher IRGC 105859 shattering protein (sh4) gene,
           partial cds
          Length = 1643

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 894 cgccgtcgccggcgtcgggg 913
to top
>gb|DQ383389.1| Oryza nivara voucher IRGC 105801 shattering protein (sh4) gene,
           partial cds
          Length = 1639

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 887 cgccgtcgccggcgtcgggg 906
to top
>gb|DQ383388.1| Oryza nivara voucher IRGC 105742 shattering protein (sh4) gene,
           partial cds
          Length = 1638

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 889 cgccgtcgccggcgtcgggg 908
to top
>gb|DQ383387.1| Oryza nivara voucher IRGC 105706 shattering protein (sh4) gene,
           partial cds
          Length = 1658

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 888 cgccgtcgccggcgtcgggg 907
to top
>gb|DQ383386.1| Oryza nivara voucher IRGC 105705 shattering protein (sh4) gene,
           partial cds
          Length = 1658

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 888 cgccgtcgccggcgtcgggg 907
to top
>gb|DQ383385.1| Oryza nivara voucher IRGC 105703 shattering protein (sh4) gene,
           partial cds
          Length = 1658

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 888 cgccgtcgccggcgtcgggg 907
to top
>gb|DQ383384.1| Oryza nivara voucher IRGC 105702 shattering protein (sh4) gene,
           partial cds
          Length = 1658

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 888 cgccgtcgccggcgtcgggg 907
to top
>gb|DQ383383.1| Oryza nivara voucher IRGC 105454 shattering protein (sh4) gene,
           partial cds
          Length = 1646

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 888 cgccgtcgccggcgtcgggg 907
to top
>gb|DQ383382.1| Oryza nivara voucher IRGC 105417 shattering protein (sh4) gene,
           partial cds
          Length = 1646

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 888 cgccgtcgccggcgtcgggg 907
to top
>gb|DQ383381.1| Oryza nivara voucher IRGC 105391 shattering protein (sh4) gene,
           partial cds
          Length = 1635

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383380.1| Oryza nivara voucher IRGC 105319 shattering protein (sh4) gene,
           partial cds
          Length = 1644

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 877 cgccgtcgccggcgtcgggg 896
to top
>gb|DQ383379.1| Oryza nivara voucher IRGC 104697 shattering protein (sh4) gene,
           partial cds
          Length = 1656

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 889 cgccgtcgccggcgtcgggg 908
to top
>gb|DQ383378.1| Oryza nivara voucher IRGC 104687 shattering protein (sh4) gene,
           partial cds
          Length = 1657

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 887 cgccgtcgccggcgtcgggg 906
to top
>gb|DQ383377.1| Oryza nivara voucher IRGC 103838 shattering protein (sh4) gene,
           partial cds
          Length = 1653

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 886 cgccgtcgccggcgtcgggg 905
to top
>gb|DQ383376.1| Oryza nivara voucher IRGC 101967 shattering protein (sh4) gene,
           partial cds
          Length = 1643

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 894 cgccgtcgccggcgtcgggg 913
to top
>gb|DQ383375.1| Oryza nivara voucher IRGC 104658 shattering protein (sh4) gene,
           partial cds
          Length = 1637

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 888 cgccgtcgccggcgtcgggg 907
to top
>gb|DQ383374.1| Oryza sativa (indica cultivar-group) cultivar CL 16 shattering
           protein (sh4) mRNA, complete cds
          Length = 1173

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 149 cgccgtcgccggcgtcgggg 168
to top
>gb|DQ383373.1| Oryza sativa (indica cultivar-group) cultivar CL 16 shattering
            protein (sh4) gene, complete cds
          Length = 5075

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  cgccgtcgccggcgtcgggg 244
            ||||||||||||||||||||
Sbjct: 2701 cgccgtcgccggcgtcgggg 2720
to top
>gb|DQ383372.1| Oryza nivara voucher IRGC 80470 shattering protein (sh4) mRNA,
           complete cds
          Length = 1155

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 225 cgccgtcgccggcgtcgggg 244
           ||||||||||||||||||||
Sbjct: 149 cgccgtcgccggcgtcgggg 168
to top
>gb|DQ383371.1| Oryza nivara voucher IRGC 80470 shattering protein (sh4) gene,
            complete cds
          Length = 5064

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 225  cgccgtcgccggcgtcgggg 244
            ||||||||||||||||||||
Sbjct: 2710 cgccgtcgccggcgtcgggg 2729
to top
>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
              complete sequence
          Length = 190432

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    cgccgtcgccggcgtcgggg 244
              ||||||||||||||||||||
Sbjct: 178263 cgccgtcgccggcgtcgggg 178244
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       ccgcgtcgtgctgccgcgcg 24
               ||||||||||||||||||||
Sbjct: 2940131 ccgcgtcgtgctgccgcgcg 2940112
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 225      cgccgtcgccggcgtcgggg 244
                ||||||||||||||||||||
Sbjct: 34266881 cgccgtcgccggcgtcgggg 34266862
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 103      gcggggagccccgtctacgggcggcagc 130
                |||||||||| ||| |||||||||||||
Sbjct: 15308872 gcggggagcctcgtatacgggcggcagc 15308845
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 2        tctccgcgtcgtgctgccgc 21
                ||||||||||||||||||||
Sbjct: 34222765 tctccgcgtcgtgctgccgc 34222746
to top
>dbj|AP005491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0062G05
          Length = 152802

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 103   gcggggagccccgtctacgggcggcagc 130
             |||||||||| ||| |||||||||||||
Sbjct: 94503 gcggggagcctcgtatacgggcggcagc 94476
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 5       ccgcgtcgtgctgccgcgcg 24
               ||||||||||||||||||||
Sbjct: 8373313 ccgcgtcgtgctgccgcgcg 8373294
to top
>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0032L17
          Length = 165808

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      tctccgcgtcgtgctgccgc 21
              ||||||||||||||||||||
Sbjct: 150279 tctccgcgtcgtgctgccgc 150260
to top
>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0689B12
          Length = 154745

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     tctccgcgtcgtgctgccgc 21
             ||||||||||||||||||||
Sbjct: 58038 tctccgcgtcgtgctgccgc 58019
to top
>ref|XM_318376.2| Anopheles gambiae str. PEST ENSANGP00000002726 (ENSANGG00000002259),
            partial mRNA
          Length = 3549

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 137  ggagcagcacgggctccacc 156
            ||||||||||||||||||||
Sbjct: 2304 ggagcagcacgggctccacc 2323
to top
>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   cgccgtcgccggcgtcgggg 244
             ||||||||||||||||||||
Sbjct: 49493 cgccgtcgccggcgtcgggg 49474
to top
>gb|AC169087.3| Gallus gallus BAC clone CH261-119D18 from chromosome ul, complete
             sequence
          Length = 225652

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   gcagcgcagtgggagcagca 145
             ||||||||||||||||||||
Sbjct: 50578 gcagcgcagtgggagcagca 50559


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,167,663
Number of Sequences: 3902068
Number of extensions: 1167663
Number of successful extensions: 28594
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28306
Number of HSP's gapped (non-prelim): 288
length of query: 262
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 240
effective length of database: 17,147,199,772
effective search space: 4115327945280
effective search space used: 4115327945280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top