ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (T... 30 2.7
2K0220_HUMAN (Q92617) Protein KIAA0220 (Fragment) 29 4.5
3ARGC2_LACPL (O08318) N-acetyl-gamma-glutamyl-phosphate reductase... 29 5.9
4SPEG_RAT (Q63638) Striated muscle-specific serine/threonine prot... 28 7.7
5PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regula... 28 7.7
6SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr... 28 7.7

>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
            activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
 Frame = +2

Query: 53   LFPFPFRLALHPRPHAL--------------PAMCGGAILSDIIPPPRRAAGGRLWQADR 190
            LFP P+R AL   P AL               A CGG    D  P P  AAGGRL+    
Sbjct: 849  LFPVPWRPALMFDPRALASIAARCAGPAPAAQAACGGGD-DDDNPHPHGAAGGRLF---G 904

Query: 191  KKRRAGPRR 217
              R +GP R
Sbjct: 905  PLRASGPLR 913



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>K0220_HUMAN (Q92617) Protein KIAA0220 (Fragment)|
          Length = 884

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +2

Query: 14  HQPPRLVSSRSVSLFPFPFRLALHPR----PHALPAMCGG 121
           H  P ++S    S+   PF   LHP+       LP++CGG
Sbjct: 454 HHQPMIISRHLPSVSSLPFHPQLHPQQMIISRHLPSVCGG 493



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>ARGC2_LACPL (O08318) N-acetyl-gamma-glutamyl-phosphate reductase 2 (EC|
           1.2.1.38) (AGPR 2) (N-acetyl-glutamate semialdehyde
           dehydrogenase 2) (NAGSA dehydrogenase 2)
          Length = 341

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 335 RSGFSGDGLKATAAGEYDCASGSAKRKRKNQFRGIP 442
           +SG SG G +ATAA  Y   + +    + NQ + IP
Sbjct: 174 KSGLSGAGKRATAASHYVAVNDNLSLYKLNQHQHIP 209



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>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3259

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 22/57 (38%), Positives = 24/57 (42%)
 Frame = +2

Query: 2   SSHTHQPPRLVSSRSVSLFPFPFRLALHPRPHALPAMCGGAILSDIIPPPRRAAGGR 172
           S H   PP  +      L P P   AL PRP ALP     A+L    PPP    G R
Sbjct: 271 SIHVSIPPSGLRREEPDLQPQPASDALRPRP-ALPPPSKSALL----PPPSPRVGKR 322



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>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 925

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = +2

Query: 86  PRPHALPAMCGGAILSDII-PPPRRAAGGRLWQADRKKRRAGPRR 217
           P PH  P   GG +   ++ PPP    G   W       R GP R
Sbjct: 652 PGPHGGPGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMR 696



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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase|
           (EC 2.7.11.1) (Aortic preferentially expressed protein
           1) (APEG-1)
          Length = 3262

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 22/57 (38%), Positives = 24/57 (42%)
 Frame = +2

Query: 2   SSHTHQPPRLVSSRSVSLFPFPFRLALHPRPHALPAMCGGAILSDIIPPPRRAAGGR 172
           S H   PP  +      L P P   AL PRP ALP     A+L    PPP    G R
Sbjct: 271 SIHVSIPPSGLHREEPDLQPQPASDALRPRP-ALPPPSKSALL----PPPSPRVGKR 322


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,456,456
Number of Sequences: 219361
Number of extensions: 579022
Number of successful extensions: 1734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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