ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09f08 |
|---|---|
| Clone Library Name | barley_pub |
>MTB1_BACSQ (Q9LAI2) Modification methylase BslI (EC 2.1.1.113) (N-4| cytosine-specific methyltransferase BslI) (M.BslI) Length = 912 Score = 35.8 bits (81), Expect = 0.054 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +1 Query: 190 RRTLPCPSCRSLNYRTLSCPKCHIPWCRRRXRSLKCHTPWCRRRXRS 330 +R +PCPSC SLN S P+ + RS +C +P+C R +S Sbjct: 465 QRRIPCPSCGSLNISGNSYPEIN-------NRSWECKSPYCPDRSKS 504
>IBRD1_HUMAN (Q8TC41) IBR domain-containing protein 1| Length = 275 Score = 35.8 bits (81), Expect = 0.054 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = +1 Query: 184 KSRRTLPCPSCRSLNYRTLSCPKCHIPWCRRRXRSLKCHTPW 309 K + +P PS Y+ + CP C WC KCH+PW Sbjct: 64 KKKGHIPTPSRSESKYK-IQCPTCQFVWC------FKCHSPW 98
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 35.8 bits (81), Expect = 0.054 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 175 QSPKSRRTLPCPSCRSLNYRTLSC--PKCHIPWCRRRXRSLKCHTPWCRRRXRSLKCHTP 348 QSP R L C C C +P C++ R ++ HT C+R+ P Sbjct: 1725 QSPGDSRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQ-HTKGCKRKTNG---GCP 1780 Query: 349 LCRKYXSMSCRHTLLCPSSR 408 +C++ ++ C H C ++ Sbjct: 1781 ICKQLIALCCYHAKHCQENK 1800
>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)| Length = 2441 Score = 35.0 bits (79), Expect = 0.092 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Frame = +1 Query: 175 QSPKSRRTLPCPSCRSLNYRTLSC--PKCHIPWCRRRXRSLKCHTPWCRRRXRSLKCHTP 348 +SP+ R L C C C +P C++ R ++ HT C+R+ P Sbjct: 1763 KSPQESRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQ-HTKGCKRKTNG---GCP 1818 Query: 349 LCRKYXSMSCRHTLLCPSSR 408 +C++ ++ C H C ++ Sbjct: 1819 VCKQLIALCCYHAKHCQENK 1838
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)| Length = 2442 Score = 33.9 bits (76), Expect = 0.20 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Frame = +1 Query: 175 QSPKSRRTLPCPSCRSLNYRTLSC--PKCHIPWCRRRXRSLKCHTPWCRRRXRSLKCHTP 348 +SP+ R + C C C +P C++ R ++ HT C+R+ P Sbjct: 1762 KSPQESRRVSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQ-HTKGCKRKTNG---GCP 1817 Query: 349 LCRKYXSMSCRHTLLCPSSR 408 +C++ ++ C H C ++ Sbjct: 1818 VCKQLIALCCYHAKHCQENK 1837
>TRAF1_HUMAN (Q13077) TNF receptor-associated factor 1 (Epstein-Barr| virus-induced protein 6) Length = 416 Score = 30.8 bits (68), Expect = 1.7 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Frame = +1 Query: 172 CQSPKSRRTLPCPSCRSLNYRT---LSCPKCHIPWCRRRXRSLKCHTPWCRRRXRSLKCH 342 CQ PK R L C C S N R CPKC R L+ +P R R + K H Sbjct: 27 CQDPKEPRALCCAGCLSENPRNGEDQICPKC-------RGEDLQSISPGSRLRTQE-KAH 78
>K1196_HUMAN (Q96KM6) Zinc finger protein KIAA1196| Length = 892 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +1 Query: 205 CPSCRSLNYRTLSCPKCHIPWCRRRXRSLKCHTPWCRRRXRS---LKCHT 345 CP+C + +TL K H+ C++ +LKC CR++ +S L HT Sbjct: 512 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQ--HCRKQFKSKAGLNYHT 559
>CNTP1_MOUSE (O54991) Contactin-associated protein 1 precursor (Caspr) (Caspr1)| (Neurexin 4) (Neurexin IV) (Paranodin) (NCP1) (MHDNIV) Length = 1385 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = -3 Query: 357 PAQRGVTLQAPXASPAPRGVALQAPXASPAPRD 259 PAQ + AP P P AP + P PRD Sbjct: 1340 PAQAPAPIPAPTQLPTPAPAPAPAPASGPGPRD 1372
>HSP1_PAPCY (Q7JIX8) Sperm protamine P1| Length = 50 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1 Query: 268 CRRRXRSLKCHTPWCRRRXRSLKCHTPLCRKYXSMSCR 381 CRRR R + CR R R+++C CR+ + CR Sbjct: 15 CRRRRRCRRRRRRRCRARRRAMRC----CRRRYRLRCR 48
>HSP1_MACMU (Q9GJU4) Sperm protamine P1| Length = 50 Score = 30.0 bits (66), Expect = 2.9 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +1 Query: 268 CRRRXRSLKCHTPWCRRRXRSLKCHTPLCRKYXSMSCR 381 CRRR R + CR R R+++C CR+ + CR Sbjct: 15 CRRRRRCRRRRRRRCRARRRAMRC----CRRRYRLRCR 48
>HSP1_HORSE (P15341) Sperm protamine P1 (Cysteine-rich protamine) (Protamine| ST1) Length = 49 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +1 Query: 268 CRRRXRSLKCHTPWCRRRXRSLKCHTPLCRKYXSMSCR 381 CRRR R +C RRR RS++ CR+Y + CR Sbjct: 14 CRRRRRR-RCR----RRRRRSVRQRRVCCRRYTVLRCR 46
>STC_DROME (P40798) Protein shuttle craft| Length = 1106 Score = 29.6 bits (65), Expect = 3.8 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 12/82 (14%) Frame = +1 Query: 202 PCPSCRSLNYRTLSC----------PKCHIPWCR--RRXRSLKCHTPWCRRRXRSLKCHT 345 P P+C + RTL C KCH+ C + +KC C + +KC Sbjct: 630 PIPTCEGICSRTLRCGKPAHPHQCGSKCHLGQCPPCPKQTGVKCR---CGHMDQMIKCR- 685 Query: 346 PLCRKYXSMSCRHTLLCPSSRS 411 LC + C+ C RS Sbjct: 686 QLCNRADDARCKRR--CTKKRS 705
>DNAA_AZOSE (Q5P4P0) Chromosomal replication initiator protein dnaA| Length = 481 Score = 29.3 bits (64), Expect = 5.0 Identities = 17/40 (42%), Positives = 18/40 (45%) Frame = -3 Query: 357 PAQRGVTLQAPXASPAPRGVALQAPXASPAPRDVALRARE 238 PA R V P A PAP QAP A+ A V R E Sbjct: 89 PAARPVIGSGPVAGPAPAPTPSQAPAATAAAPAVVTRPAE 128
>SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor| Length = 297 Score = 29.3 bits (64), Expect = 5.0 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Frame = +1 Query: 172 CQSPKSRRTLPCPSCRSLNYRTLSCPKCHI--PWCRRRXRSLKCHTPWCRRRXRSLKCHT 345 C++ R P C + + PKC P CR + K P CR + K Sbjct: 45 CETEPPRCETEPPRCET------TTPKCETTPPTCRTEPPTCKTEPPTCRTEPPTCKTKP 98 Query: 346 PLCR 357 P CR Sbjct: 99 PTCR 102
>TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II)| Length = 518 Score = 29.3 bits (64), Expect = 5.0 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -3 Query: 330 APXASPAPRGVALQAPXASPAPRDVALRAREG 235 AP +PA A +AP A AP + A A EG Sbjct: 482 APAEAPAAEATAAEAPPAEAAPAEAAPAAAEG 513
>DFR12_MOUSE (P50716) Defensin-related cryptdin, related sequence 12 precursor| (Cryptdin-related protein 4C-5) (CRS4C) Length = 91 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Frame = +1 Query: 184 KSRRTLPCPSCRSLNY--RTLSCPKC 255 ++RR PCPSC S + R L CP C Sbjct: 61 RARRCPPCPSCLSCPWCPRCLRCPMC 86
>KRA3_SHEEP (P02441) Keratin, high-sulfur matrix protein, IIIA3| Length = 131 Score = 29.3 bits (64), Expect = 5.0 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Frame = +1 Query: 172 CQSPKSRRTLPCPSCRSLNYRTLSCPKCHIPWCRRRXRSLKCHTPWCRRRXRSLKCHTPL 351 C P+ R PC CR ++ +T+S P +P C R P C C P+ Sbjct: 18 CLQPRYYRD-PC-CCRPVSCQTVSRPVTFVPRCTR---------PICE------PCRRPV 60 Query: 352 CRKYXSMS---CRHTLLCPSS 405 C S+ CR CP+S Sbjct: 61 CCDPCSLQEGCCRPITCCPTS 81
>TF65_HUMAN (Q04206) Transcription factor p65 (Nuclear factor NF-kappa-B p65| subunit) Length = 551 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = -3 Query: 345 GVTLQAPXASPAPRGVALQAPXASPAPRDVALRAREGAVV 226 G QA +PAP V QAP +PAP V+ A+ A V Sbjct: 371 GQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAPV 410
>CJ003_HUMAN (Q53EZ4) Protein C10orf3| Length = 464 Score = 28.9 bits (63), Expect = 6.6 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +1 Query: 220 SLNYRTLSCPKCHIPWCRRRXRSLKCHTPWCRR 318 +LN + CPKC+I + R L H +C + Sbjct: 432 ALNESLVECPKCNIQYPATEHRDLLVHVEYCSK 464
>MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP)| Length = 642 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = -3 Query: 357 PAQRGVTLQAPXASPAPRGVALQAPXASPAP 265 PA AP SPAP + AP +PAP Sbjct: 299 PAPAPAPAPAPAPSPAPASAPVPAPAPTPAP 329
>HSP1_OTOHE (Q8WNZ2) Sperm protamine P1| Length = 49 Score = 28.9 bits (63), Expect = 6.6 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +1 Query: 268 CRRRXRSLKCHTPWCRRRXRSLKCHTPLCRKYXSMSCR 381 CRRR R C R+ R C CR+Y M CR Sbjct: 14 CRRRRRKCYRRRRRCSRKRRRRVC----CRRYTVMRCR 47
>PRAX_RAT (Q63425) Periaxin| Length = 1383 Score = 28.5 bits (62), Expect = 8.6 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +3 Query: 390 AMPELPKPELPHPAVPEVP 446 A+P++P PEL P VP+VP Sbjct: 688 AVPDVPLPELQLPKVPQVP 706
>KAD_CHLPN (Q9Z8U0) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 213 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 4/28 (14%) Frame = +1 Query: 205 CPSCRSLNYRT----LSCPKCHIPWCRR 276 CPSC + Y T CP CH+P RR Sbjct: 133 CPSCSRI-YNTSQGHTECPDCHVPLIRR 159
>AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathrin| coat-associated protein AP180) (91 kDa synaptosomal-associated protein) Length = 915 Score = 28.5 bits (62), Expect = 8.6 Identities = 21/83 (25%), Positives = 27/83 (32%) Frame = -3 Query: 357 PAQRGVTLQAPXASPAPRGVALQAPXASPAPRDVALRAREGAVVXXXXXXXXXXXXXXXA 178 P + + P AS AP + A SPAP VA A Sbjct: 496 PPETSAPVVTPTASTAP---PVPATAPSPAPTAVAATAATTTAAAAATTTATTSAAAATT 552 Query: 177 LAAPG*SDVVDTPSSAQPLLGAA 109 AAP D+ + P + AA Sbjct: 553 AAAPPALDIFGDLFDSAPEVAAA 575
>ODP2_AZOVI (P10802) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 637 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 6/45 (13%) Frame = -3 Query: 342 VTLQAPXASPA-PR-----GVALQAPXASPAPRDVALRAREGAVV 226 +TL+ A+P+ PR G A AP A+PAP V +R GA V Sbjct: 292 LTLRVAGAAPSGPRARGSPGQAAAAPGAAPAPAPVGAPSRNGAKV 336
>ODO2_AZOVI (P20708) Dihydrolipoyllysine-residue succinyltransferase component| of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) (E2) (Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex) Length = 398 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = -3 Query: 345 GVTLQAPXASPAPRGVA---LQAPXASPAPRDVA 253 G AP A+PAP A +AP SPA R +A Sbjct: 79 GAATAAPAAAPAPAAAAPAAAEAPILSPAARKIA 112
>AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clathrin| coat-associated protein AP180) (91 kDa synaptosomal-associated protein) (Phosphoprotein F1-20) Length = 901 Score = 28.5 bits (62), Expect = 8.6 Identities = 21/83 (25%), Positives = 27/83 (32%) Frame = -3 Query: 357 PAQRGVTLQAPXASPAPRGVALQAPXASPAPRDVALRAREGAVVXXXXXXXXXXXXXXXA 178 P + + P AS AP + A SPAP VA A Sbjct: 496 PPETSAPVVTPTASTAP---PVPATAPSPAPTAVAATAATTTAAAAATTTATTSAAAATT 552 Query: 177 LAAPG*SDVVDTPSSAQPLLGAA 109 AAP D+ + P + AA Sbjct: 553 AAAPPALDIFGDLFDSAPEVAAA 575
>HSP1_PONPY (P35310) Sperm protamine P1 (Cysteine-rich protamine)| Length = 50 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +1 Query: 268 CRRRXRSLKCHTPWCRRRXRSLKCHTPLCRKYXSMSCR 381 CRRR R + C+ R R+++C CR+ + CR Sbjct: 15 CRRRQRCHRRRRRCCQTRRRAMRC----CRRRYRLRCR 48
>HSP1_MURCY (Q8WNY7) Sperm protamine P1| Length = 47 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +1 Query: 268 CRRRXRSLKCHTPWCRRRXRSLKCHTPLCRKYXSMSCR 381 CRRR R C RR R C CR+Y + CR Sbjct: 12 CRRRRRRCHRRRRRCSRRRRRRVC----CRRYTVIRCR 45 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,278,999 Number of Sequences: 219361 Number of extensions: 889631 Number of successful extensions: 3831 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3765 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
