Clone Name | bart09f08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.112 mRNA Length = 1006 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Plus Query: 286 agcctgaagtgccacaccccgtggtgccggag 317 ||||||| ||||||||||| |||||||||||| Sbjct: 583 agcctgaggtgccacaccctgtggtgccggag 614 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccggagctgccaaagcccga 184 |||||||||||||||||||| Sbjct: 366 ccggagctgccaaagcccga 385 Score = 40.1 bits (20), Expect = 6.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 195 caccctgccatgcccgagctgccgaagcctgaactaccgc 234 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 267 caccccgccgtgccggagcttccgaagcctgaactgccgc 306
>ref|XM_479031.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1005 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Plus Query: 286 agcctgaagtgccacaccccgtggtgccggag 317 ||||||| ||||||||||| |||||||||||| Sbjct: 580 agcctgaggtgccacaccctgtggtgccggag 611 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccggagctgccaaagcccga 184 |||||||||||||||||||| Sbjct: 363 ccggagctgccaaagcccga 382 Score = 40.1 bits (20), Expect = 6.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 195 caccctgccatgcccgagctgccgaagcctgaactaccgc 234 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 264 caccccgccgtgccggagcttccgaagcctgaactgccgc 303
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Minus Query: 286 agcctgaagtgccacaccccgtggtgccggag 317 ||||||| ||||||||||| |||||||||||| Sbjct: 24416953 agcctgaggtgccacaccctgtggtgccggag 24416922 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 282 aaggagcctgaagtgccacaccccgtggtgccgga 316 |||| ||||||| |||||||||||| ||||||||| Sbjct: 24428069 aaggtgcctgaactgccacaccccgaggtgccgga 24428035 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 189 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 227 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 24419282 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 24419244 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Minus Query: 165 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 222 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 24419348 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 24419291 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 78 ctgctctcatgcagctccatgagcagtgcagc 109 ||||||||||| |||||||| ||||| ||||| Sbjct: 24428237 ctgctctcatggagctccatcagcagcgcagc 24428206 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 ccggagctgccaaagcccga 184 |||||||||||||||||||| Sbjct: 24428123 ccggagctgccaaagcccga 24428104 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 384 caccctgctatgcccgagctcccgaagcctga 415 |||||||| |||| ||||||||||||||||| Sbjct: 24428009 caccctgcggtgccggagctcccgaagcctga 24427978 Score = 40.1 bits (20), Expect = 6.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 195 caccctgccatgcccgagctgccgaagcctgaactaccgc 234 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 24417269 caccccgccgtgccggagcttccgaagcctgaactgccgc 24417230 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 ccggagctgccaaagcccga 184 |||||||||||||||||||| Sbjct: 24417170 ccggagctgccaaagcccga 24417151
>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_B10 Length = 100294 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Minus Query: 286 agcctgaagtgccacaccccgtggtgccggag 317 ||||||| ||||||||||| |||||||||||| Sbjct: 42820 agcctgaggtgccacaccctgtggtgccggag 42789 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Minus Query: 282 aaggagcctgaagtgccacaccccgtggtgccgga 316 |||| ||||||| |||||||||||| ||||||||| Sbjct: 53936 aaggtgcctgaactgccacaccccgaggtgccgga 53902 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 189 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 227 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 45149 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 45111 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Minus Query: 165 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 222 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 45215 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 45158 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 78 ctgctctcatgcagctccatgagcagtgcagc 109 ||||||||||| |||||||| ||||| ||||| Sbjct: 54104 ctgctctcatggagctccatcagcagcgcagc 54073 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 ccggagctgccaaagcccga 184 |||||||||||||||||||| Sbjct: 53990 ccggagctgccaaagcccga 53971 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 384 caccctgctatgcccgagctcccgaagcctga 415 |||||||| |||| ||||||||||||||||| Sbjct: 53876 caccctgcggtgccggagctcccgaagcctga 53845 Score = 40.1 bits (20), Expect = 6.2 Identities = 35/40 (87%) Strand = Plus / Minus Query: 195 caccctgccatgcccgagctgccgaagcctgaactaccgc 234 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 43136 caccccgccgtgccggagcttccgaagcctgaactgccgc 43097 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 ccggagctgccaaagcccga 184 |||||||||||||||||||| Sbjct: 43037 ccggagctgccaaagcccga 43018
>dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B01, full insert sequence Length = 1005 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Plus Query: 286 agcctgaagtgccacaccccgtggtgccggag 317 ||||||| ||||||||||| |||||||||||| Sbjct: 580 agcctgaggtgccacaccctgtggtgccggag 611 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccggagctgccaaagcccga 184 |||||||||||||||||||| Sbjct: 363 ccggagctgccaaagcccga 382 Score = 40.1 bits (20), Expect = 6.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 195 caccctgccatgcccgagctgccgaagcctgaactaccgc 234 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 264 caccccgccgtgccggagcttccgaagcctgaactgccgc 303
>dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162L16, full insert sequence Length = 1006 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Plus Query: 286 agcctgaagtgccacaccccgtggtgccggag 317 ||||||| ||||||||||| |||||||||||| Sbjct: 583 agcctgaggtgccacaccctgtggtgccggag 614 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccggagctgccaaagcccga 184 |||||||||||||||||||| Sbjct: 366 ccggagctgccaaagcccga 385 Score = 40.1 bits (20), Expect = 6.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 195 caccctgccatgcccgagctgccgaagcctgaactaccgc 234 ||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 267 caccccgccgtgccggagcttccgaagcctgaactgccgc 306
>ref|XM_479036.1| Oryza sativa (japonica cultivar-group), mRNA Length = 678 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 282 aaggagcctgaagtgccacaccccgtggtgccgga 316 |||| ||||||| |||||||||||| ||||||||| Sbjct: 289 aaggtgcctgaactgccacaccccgaggtgccgga 323 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 384 caccctgctatgcccgagctcccgaagcctga 415 |||||||| |||| ||||||||||||||||| Sbjct: 349 caccctgcggtgccggagctcccgaagcctga 380 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccggagctgccaaagcccga 184 |||||||||||||||||||| Sbjct: 235 ccggagctgccaaagcccga 254 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 78 ctgctctcatgcagctccatgagcagtgcagc 109 ||||||||||| |||||||| ||||| ||||| Sbjct: 121 ctgctctcatggagctccatcagcagcgcagc 152
>ref|XM_479032.1| Oryza sativa (japonica cultivar-group), mRNA Length = 994 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 189 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 227 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 719 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 757 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Plus Query: 165 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 222 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 653 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 710
>ref|XM_507388.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113 mRNA Length = 1071 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 189 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 227 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 718 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 756 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Plus Query: 165 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 222 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
>ref|XM_506448.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.113 mRNA Length = 1071 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 189 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 227 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 718 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 756 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Plus Query: 165 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 222 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
>dbj|AK106214.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G11, full insert sequence Length = 1071 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 189 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 227 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 718 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 756 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Plus Query: 165 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 222 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
>dbj|AK105918.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H12, full insert sequence Length = 1071 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 189 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 227 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 718 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 756 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Plus Query: 165 ccggagctgccaaagcccgaaatcccgccgcaccctgccatgcccgagctgccgaagc 222 ||||||||||| |||| |||| ||||||||||||| | |||| |||||||| |||| Sbjct: 652 ccggagctgcctaagcacgaagagccgccgcaccctgtcgtgccggagctgcccaagc 709
>dbj|AK070771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069L14, full insert sequence Length = 988 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 189 ccgccgcaccctgccatgcccgagctgccgaagcctgaa 227 ||||||||||| | | |||| |||||||||||||||||| Sbjct: 713 ccgccgcaccccgtcgtgccggagctgccgaagcctgaa 751
>dbj|AK062673.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G06, full insert sequence Length = 678 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 282 aaggagcctgaagtgccacaccccgtggtgccgga 316 |||| ||||||| |||||||||||| ||||||||| Sbjct: 289 aaggtgcctgaactgccacaccccgaggtgccgga 323 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 384 caccctgctatgcccgagctcccgaagcctga 415 |||||||| |||| ||||||||||||||||| Sbjct: 349 caccctgcggtgccggagctcccgaagcctga 380 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 ccggagctgccaaagcccga 184 |||||||||||||||||||| Sbjct: 235 ccggagctgccaaagcccga 254 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 78 ctgctctcatgcagctccatgagcagtgcagc 109 ||||||||||| |||||||| ||||| ||||| Sbjct: 121 ctgctctcatggagctccatcagcagcgcagc 152
>gb|AY112347.1| Zea mays CL32321_1 mRNA sequence Length = 636 Score = 46.1 bits (23), Expect = 0.10 Identities = 55/65 (84%), Gaps = 3/65 (4%) Strand = Plus / Minus Query: 165 ccggagctgccaaagcccgaaatcccgccgcaccctgc---catgcccgagctgccgaag 221 ||||||||||| |||||||| | | ||||||||| || | ||||||||||||||||| Sbjct: 596 ccggagctgcccaagcccgagctgcagccgcacccggcggccgtgcccgagctgccgaag 537 Query: 222 cctga 226 ||||| Sbjct: 536 cctga 532
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 156 ccgatcatcccggagctgccaaagc 180 |||||||||||||||||||| |||| Sbjct: 98966 ccgatcatcccggagctgccgaagc 98942
>gb|U00065.1| Caenorhabditis elegans cosmid D1044, complete sequence Length = 40301 Score = 40.1 bits (20), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 269 gccggagacgccnaaggagcctg 291 |||||||||||| |||||||||| Sbjct: 32946 gccggagacgcccaaggagcctg 32924 Score = 40.1 bits (20), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 311 gccggagacgccnaaggagcctg 333 |||||||||||| |||||||||| Sbjct: 32946 gccggagacgcccaaggagcctg 32924
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ggttgtgccgaagaaggagt 144 |||||||||||||||||||| Sbjct: 2419917 ggttgtgccgaagaaggagt 2419898
>ref|NM_065783.3| Caenorhabditis elegans D1044.6 (D1044.6) mRNA, complete cds Length = 3558 Score = 40.1 bits (20), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 311 gccggagacgccnaaggagcctg 333 |||||||||||| |||||||||| Sbjct: 849 gccggagacgcccaaggagcctg 871 Score = 40.1 bits (20), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 269 gccggagacgccnaaggagcctg 291 |||||||||||| |||||||||| Sbjct: 849 gccggagacgcccaaggagcctg 871
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 catgcccgagctgccgaagc 222 |||||||||||||||||||| Sbjct: 1025909 catgcccgagctgccgaagc 1025928
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 gagcctgaagtgtcacaccc 346 |||||||||||||||||||| Sbjct: 235701 gagcctgaagtgtcacaccc 235682 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,692,978 Number of Sequences: 3902068 Number of extensions: 2692978 Number of successful extensions: 54721 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54403 Number of HSP's gapped (non-prelim): 317 length of query: 458 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 436 effective length of database: 17,147,199,772 effective search space: 7476179100592 effective search space used: 7476179100592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)