ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09f05 |
|---|---|
| Clone Library Name | barley_pub |
>SDE3_ARATH (Q8GYD9) Probable RNA helicase SDE3 (EC 3.6.1.-) (Silencing defective| protein 3) Length = 1002 Score = 162 bits (411), Expect = 3e-40 Identities = 81/119 (68%), Positives = 95/119 (79%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 ITPYR QV KIK+ L+ +M +++VGSVEQF GQE++VIIISTVRST+KHNEFDR + LG Sbjct: 712 ITPYRQQVMKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLG 771 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXGSYXGCPLPPPEEEV 357 FLSN RFNVAITRA SLLVI+GNPHII KD +W+KLL C D +Y GC LP EE V Sbjct: 772 FLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGCGLPEQEEFV 830
>M10L1_MOUSE (Q99MV5) Putative helicase Mov10l1 (EC 3.6.1.-) (Moloney leukemia| virus 10-like protein 1) (MOV10-like 1) (Cardiac helicase activated by MEF2 protein) (Cardiac-specific RNA helicase) Length = 1187 Score = 127 bits (318), Expect = 2e-29 Identities = 65/114 (57%), Positives = 80/114 (70%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 ITPYR QV KIK L ++ D++VGSVE+F GQE VI+ISTVRS E DR+F LG Sbjct: 1068 ITPYRKQVEKIKILLRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYF-LG 1126 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXGSYXGCPLPP 342 FLSN RFNVAITR ++LL+I+GNPH++ +D + LL Y G Y GC LPP Sbjct: 1127 FLSNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALLEYSVSNGVYTGCDLPP 1180
>M10L1_HUMAN (Q9BXT6) Putative helicase Mov10l1 (EC 3.6.1.-) (Moloney leukemia| virus 10-like protein 1) (MOV10-like 1) Length = 1211 Score = 124 bits (311), Expect = 1e-28 Identities = 64/114 (56%), Positives = 80/114 (70%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 ITPYR QV KI+ L ++ D++VGSVE+F GQE VIIISTVRS E DR+F LG Sbjct: 1066 ITPYRKQVEKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYF-LG 1124 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXGSYXGCPLPP 342 FLSN RFNVAITR ++LL+++GNPH++ +D + LL Y G Y GC LPP Sbjct: 1125 FLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEYSITNGVYMGCDLPP 1178
>MOV10_MOUSE (P23249) Putative helicase MOV-10 (EC 3.6.1.-) (Moloney leukemia| virus 10 protein) Length = 1004 Score = 122 bits (305), Expect = 7e-28 Identities = 60/121 (49%), Positives = 79/121 (65%), Gaps = 8/121 (6%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFE--------MPDLRVGSVEQFXGQEREVIIISTVRSTVKHNE 156 I+PYR QV KI+ + + + DL+VGSVE+F GQER VI+ISTVRS+ + Sbjct: 831 ISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQ 890 Query: 157 FDRFFNLGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXGSYXGCPL 336 D FNLGFL N RFNVA+TRA++LL++VGNP ++ D W L +C + G Y GCP Sbjct: 891 LDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKENGGYTGCPF 950 Query: 337 P 339 P Sbjct: 951 P 951
>MOV10_HUMAN (Q9HCE1) Putative helicase MOV-10 (EC 3.6.1.-) (Moloney leukemia| virus 10 protein) Length = 1003 Score = 122 bits (305), Expect = 7e-28 Identities = 61/121 (50%), Positives = 79/121 (65%), Gaps = 8/121 (6%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFE--------MPDLRVGSVEQFXGQEREVIIISTVRSTVKHNE 156 I+PYR QV KI+ + + + DL+VGSVE+F GQER VI+ISTVRS+ + Sbjct: 830 ISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQ 889 Query: 157 FDRFFNLGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXGSYXGCPL 336 D FNLGFL N RFNVA+TRA++LL+IVGNP ++ D W L +C + G Y GCP Sbjct: 890 LDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPDWKVFLEFCKENGGYTGCPF 949 Query: 337 P 339 P Sbjct: 950 P 950
>ARMI_DROME (Q6J5K9) Probable RNA helicase armi (EC 3.6.1.-) (Armitage protein)| Length = 1274 Score = 104 bits (260), Expect = 1e-22 Identities = 48/113 (42%), Positives = 75/113 (66%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 ITPY+ QV ++ ++ ++GSVE+F GQER++I+ISTVRS+ + D F+LG Sbjct: 1134 ITPYQKQVKMLRSMFIGTDVVMPKIGSVEEFQGQERDIILISTVRSSEEILRMDARFSLG 1193 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXGSYXGCPLP 339 F+ R NVA++RAR++++I GNPH++ D W +L+ +C +Y GC LP Sbjct: 1194 FVRCSKRLNVAVSRARAMMIIFGNPHLLAVDECWRQLILFCVKNNAYFGCDLP 1246
>SEN1_SCHPO (Q92355) Helicase sen1 (EC 3.6.1.-) (Endonuclease sen1)| Length = 1687 Score = 70.1 bits (170), Expect = 3e-12 Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 4/102 (3%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFE----MPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRF 168 ITPYR Q++++++A + M + + +V+ F GQE+++I S V+S KH Sbjct: 1536 ITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHG----- 1590 Query: 169 FNLGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLL 294 +GFL ++ R NVA+TRARS L+I+GN + D W L+ Sbjct: 1591 --IGFLRDFRRLNVALTRARSSLLIIGNMETLKTDDLWGSLV 1630
>Y104_METJA (Q57568) Hypothetical ATP-dependent helicase MJ0104 (EC 3.6.1.-)| Length = 663 Score = 68.6 bits (166), Expect = 9e-12 Identities = 35/100 (35%), Positives = 62/100 (62%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 ITPY QV +++ E + D+ V +V+ F G+E E I+IS VR+ N G Sbjct: 560 ITPYDAQVRYLRRLFEEHNI-DIEVNTVDGFQGRENEAIVISFVRTK----------NFG 608 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRY 300 FL + R NVAITRA+ L+++GN +++ +D+ +++++++ Sbjct: 609 FLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKW 648
>YKB7_YEAST (P34243) Hypothetical ATP-dependent helicase YKL017C (EC 3.6.1.-)| Length = 683 Score = 67.8 bits (164), Expect = 2e-11 Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Frame = +1 Query: 1 ITPYRPQVNKIKKAL-ETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNL 177 I+PY QV+ +KK + + ++ D+ + +V+ F G+E++VII+S VRS K F + Sbjct: 572 ISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEK-------FEV 624 Query: 178 GFLSNYXRFNVAITRARSLLVIVGNPHIITK 270 GFL R NVA+TR R LV+VGN ++ + Sbjct: 625 GFLKEERRLNVAMTRPRRQLVVVGNIEVLQR 655
>RENT1_DROME (Q9VYS3) Regulator of nonsense transcripts 1 homolog| Length = 1180 Score = 66.6 bits (161), Expect = 3e-11 Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 6/109 (5%) Frame = +1 Query: 1 ITPYRPQ------VNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFD 162 ITPY Q + + +L + ++ + SV+ F G+E+++II+S VRS + Sbjct: 773 ITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQG--- 829 Query: 163 RFFNLGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCAD 309 +GFL++ R NVA+TRA+ ++IVGNP ++ K + W+ LL + D Sbjct: 830 ----IGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKD 874
>RENT1_NEUCR (Q9HEH1) Regulator of nonsense transcripts 1 homolog| Length = 1093 Score = 65.9 bits (159), Expect = 6e-11 Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 6/109 (5%) Frame = +1 Query: 1 ITPYRPQVNKIKKALE---TFEMPDLR---VGSVEQFXGQEREVIIISTVRSTVKHNEFD 162 ITPY Q + I ++ TF+ R V SV+ F G+E++ I++S VRS Sbjct: 778 ITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQG--- 834 Query: 163 RFFNLGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCAD 309 +GFLS+ R NVA+TRA+ LVI+GNP ++ K W LL + D Sbjct: 835 ----IGFLSDPRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFKD 879
>RENT1_MOUSE (Q9EPU0) Regulator of nonsense transcripts 1 (EC 3.6.1.-)| (ATP-dependent helicase RENT1) (Nonsense mRNA reducing factor 1) (NORF1) (Up-frameshift suppressor 1 homolog) (mUpf1) Length = 1113 Score = 64.3 bits (155), Expect = 2e-10 Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 6/118 (5%) Frame = +1 Query: 1 ITPYRPQVNKIKK------ALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFD 162 ITPY Q + + + +L T ++ + SV+ F G+E++ II+S VR+ NE Sbjct: 788 ITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRA----NEHQ 843 Query: 163 RFFNLGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXGSYXGCPL 336 +GFL++ R NVA+TRAR ++IVGNP ++K W+ LL Y + + PL Sbjct: 844 ---GIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKEQKALVEGPL 898
>RENT1_HUMAN (Q92900) Regulator of nonsense transcripts 1 (EC 3.6.1.-)| (ATP-dependent helicase RENT1) (Nonsense mRNA reducing factor 1) (NORF1) (Up-frameshift suppressor 1 homolog) (hUpf1) Length = 1129 Score = 64.3 bits (155), Expect = 2e-10 Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 6/106 (5%) Frame = +1 Query: 1 ITPYRPQVNKIKK------ALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFD 162 ITPY Q + + + +L T ++ + SV+ F G+E++ II+S VR+ NE Sbjct: 804 ITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRA----NEHQ 859 Query: 163 RFFNLGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRY 300 +GFL++ R NVA+TRAR ++IVGNP ++K W+ LL Y Sbjct: 860 ---GIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY 902
>RENT1_ARATH (Q9FJR0) Regulator of nonsense transcripts 1 homolog (EC 3.6.1.-)| (ATP-dependent helicase UPF1) Length = 1254 Score = 63.5 bits (153), Expect = 3e-10 Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 6/106 (5%) Frame = +1 Query: 1 ITPYRPQ----VNKIKK--ALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFD 162 ITPY Q VN + + +L ++ V SV+ F G+E++ II+S VRS NE Sbjct: 813 ITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRS----NEHQ 868 Query: 163 RFFNLGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRY 300 +GFL++ R NVA+TRAR +VI+GNP +++K W+ LL + Sbjct: 869 ---GIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTH 911
>HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (EC 3.6.1.-)| Length = 1942 Score = 62.8 bits (151), Expect = 5e-10 Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 18/127 (14%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRS--TVKHNEFD---- 162 +TPY QV +I+ L + D+ V V G++ V+ +STVR+ T KH + Sbjct: 953 VTPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKK 1012 Query: 163 --------RFFNLGFLSNYXRFNVAITRARSLLVIVGNPHIITK----DRHWDKLLRYCA 306 + GFLSNY N AITRA+SL+ +VG+P + + W++ + C Sbjct: 1013 EQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCH 1072 Query: 307 DXGSYXG 327 + S G Sbjct: 1073 ENSSLHG 1079
>SEN1_YEAST (Q00416) Helicase SEN1 (EC 3.6.1.-) (tRNA-splicing endonuclease| positive effector) Length = 2231 Score = 60.8 bits (146), Expect = 2e-09 Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 4/107 (3%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFE----MPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRF 168 I+PYR Q+ K++K + + +++ F GQE+E+I+IS VR+ D Sbjct: 1749 ISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRAD------DTK 1802 Query: 169 FNLGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCAD 309 ++GFL ++ R NVA+TRA++ + ++G+ + K + W L+ D Sbjct: 1803 SSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIEDAKD 1849
>SMBP2_MOUSE (P40694) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent| helicase IGHMBP2) (Immunoglobulin mu-binding protein 2) (SMUBP-2) (Cardiac transcription factor 1) (CATF1) Length = 993 Score = 59.7 bits (143), Expect = 4e-09 Identities = 33/105 (31%), Positives = 59/105 (56%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 I PY QV+ ++++L + P+L + SV+ F G+E+E ++++ VRS K +G Sbjct: 537 IAPYNLQVDLLRQSLSN-KHPELEIKSVDGFQGREKEAVLLTFVRSNRKGE-------VG 588 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXG 315 FL+ R NVA+TRAR + ++ + H + + L+ Y + G Sbjct: 589 FLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLETLVDYFTEHG 633
>RENT1_FUGRU (Q98TR3) Putative regulator of nonsense transcripts 1 (EC 3.6.1.-)| (ATP-dependent helicase RENT1) Length = 1097 Score = 58.9 bits (141), Expect = 7e-09 Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 5/103 (4%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETF-----EMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDR 165 ITPY Q + + + ++ ++ + + SV+ F G+E++ II+S VR+ NE Sbjct: 774 ITPYEGQRSYLVQYMQFSGSLHTKLYQVEIASVDAFQGREKDFIILSCVRA----NEHQ- 828 Query: 166 FFNLGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLL 294 +GFL++ R NVA+TRA+ ++IVGNP ++K W+ LL Sbjct: 829 --GIGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLL 869
>RENT1_SCHPO (Q09820) Regulator of nonsense transcripts 1 homolog (EC 3.6.1.-)| (ATP-dependent helicase SPAC16C9.06c) Length = 925 Score = 58.2 bits (139), Expect = 1e-08 Identities = 29/83 (34%), Positives = 52/83 (62%) Frame = +1 Query: 67 LRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLGFLSNYXRFNVAITRARSLLVIV 246 + V SV+ F G+E++ II+S VRS+ +H +GF+++ R NVA+TRA+ ++++ Sbjct: 749 VEVASVDAFQGREKDFIILSCVRSS-EHQ------GIGFVNDPRRLNVALTRAKYGVIVL 801 Query: 247 GNPHIITKDRHWDKLLRYCADXG 315 GNP ++ K W + +C + G Sbjct: 802 GNPKVLAKHALWYHFVLHCKEKG 824
>SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent| helicase IGHMBP2) (Immunoglobulin mu-binding protein 2) (SMUBP-2) (Glial factor 1) (GF-1) Length = 993 Score = 56.6 bits (135), Expect = 4e-08 Identities = 33/105 (31%), Positives = 57/105 (54%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 ++PY QV+ ++++L P+L + SV+ F G+E+E +I+S VRS +R +G Sbjct: 538 VSPYNLQVDLLRQSL-VHRHPELEIKSVDGFQGREKEAVILSFVRS-------NRKGEVG 589 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXG 315 FL+ R NVA+TRAR + ++ + + L+ Y G Sbjct: 590 FLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHG 634
>RENT1_CAEEL (O76512) Regulator of nonsense transcripts 1 (EC 3.6.1.-)| (ATP-dependent helicase smg-2) (Nonsense mRNA reducing factor 1) (Up-frameshift suppressor 1 homolog) Length = 1069 Score = 56.6 bits (135), Expect = 4e-08 Identities = 29/79 (36%), Positives = 49/79 (62%) Frame = +1 Query: 64 DLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLGFLSNYXRFNVAITRARSLLVI 243 ++ + SV+ F G+E++ II++ VRS + +GFLS+ R NVAITRA+ LV+ Sbjct: 794 NVEIASVDAFQGREKDYIIVTCVRS-------NDILGIGFLSDPRRLNVAITRAKYGLVL 846 Query: 244 VGNPHIITKDRHWDKLLRY 300 VGN ++ + W +L+ + Sbjct: 847 VGNAKVLARHDLWHELINH 865
>SMBP2_MESAU (Q60560) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent| helicase IGHMBP2) (Immunoglobulin mu-binding protein 2) (SMUBP-2) (Insulin II gene enhancer-binding protein) (RIPE3B-binding complex 3B2 p110 subunit) (RIP-1) Length = 989 Score = 56.2 bits (134), Expect = 5e-08 Identities = 33/105 (31%), Positives = 58/105 (55%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 I PY QV+ ++++L + P+L + SV+ F G+E+E +I++ VRS +R +G Sbjct: 537 IAPYNLQVDLLRQSLSN-KHPELEIKSVDGFQGREKEAVILTFVRS-------NRKGEVG 588 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXG 315 FL+ R NVA+TRAR + ++ + + L+ Y + G Sbjct: 589 FLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVDYFTEHG 633
>NAM7_YEAST (P30771) ATP-dependent helicase NAM7 (EC 3.6.1.-) (Nuclear| accomodation of mitochondria 7 protein) (Nonsense-mediated mRNA decay protein 1) (Up-frameshift suppressor 1) Length = 971 Score = 55.8 bits (133), Expect = 6e-08 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 6/111 (5%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPD------LRVGSVEQFXGQEREVIIISTVRSTVKHNEFD 162 ITPY Q I + ++ D + V SV+ F G+E++ II+S VR+ + Sbjct: 729 ITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQA--- 785 Query: 163 RFFNLGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXG 315 +GFL + R NV +TRA+ LVI+GNP + ++ W+ LL + + G Sbjct: 786 ----IGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>SETX_HUMAN (Q7Z333) Probable helicase senataxin (EC 3.6.1.-) (SEN1 homolog)| Length = 2677 Score = 54.3 bits (129), Expect = 2e-07 Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 2/108 (1%) Frame = +1 Query: 1 ITPYRPQVNKIKKAL--ETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFN 174 IT Y+ Q I+K L E V +V+ F G++++ +I++ VR+ + Sbjct: 2345 ITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQG------S 2398 Query: 175 LGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYCADXGS 318 +GFL++ R NV ITRA+ L I+G+ + +++HW++L++ G+ Sbjct: 2399 IGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKRGA 2446
>PR285_HUMAN (Q9BYK8) Peroxisomal proliferator-activated receptor A-interacting| complex 285 kDa protein (EC 3.6.1.-) (ATP-dependent helicase PRIC285) (PPAR-alpha-interacting complex protein 285) (PPAR-gamma DBD-interacting protein 1) (PDIP1) Length = 2649 Score = 53.9 bits (128), Expect = 2e-07 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 6/107 (5%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFN-- 174 +TPY Q ++I KAL + + V S+ + G E +++STVR+ K + R Sbjct: 2521 LTPYNAQASEISKALRREGIAGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSW 2580 Query: 175 ----LGFLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLLRYC 303 LGF+ + + NVA+TRA+ L ++G+ ++ W LL +C Sbjct: 2581 LKKFLGFVVDPNQVNVAVTRAQEGLCLIGDHLLLRCCPLWRSLLDFC 2627 Score = 40.0 bits (92), Expect = 0.003 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 4/115 (3%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 + + QV+ +++ L ++ + VGS E G++ V+++STV T + Sbjct: 832 VVSHGAQVSALRQELRRRDLGQVSVGSFEILPGRQFRVVVLSTVH-TCQSLLSPGALAPE 890 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHIITK----DRHWDKLLRYCADXGSYXGCP 333 F ++ N +TRA+S LV+VG+ + + W+ +R C + S CP Sbjct: 891 FFTDARVLNTVLTRAQSQLVVVGDAVALCSFGACGKLWESFIRECVERHSV--CP 943
>ECM32_YEAST (P32644) Putative ATP-dependent RNA helicase ECM32 (EC 3.6.1.-)| (Extracellular matrix protein 32) (Helicase 1) (scHelI) (DNA helicase B) (DNA helicase III) (Hcs B) (Modulator of translation termination protein 1) Length = 1121 Score = 52.4 bits (124), Expect = 7e-07 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Frame = +1 Query: 67 LRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLGFLSNYXRFNVAITRARSLLVIV 246 L V +V+ F G E+ II S VR+ ++ +GFL + R NVA+TRA+ L++V Sbjct: 1036 LHVATVDSFQGHEKSFIIFSCVRNNTENK-------IGFLRDKRRLNVALTRAKHGLIVV 1088 Query: 247 GNPHIITK-DRHWDKLLRY 300 GN +++ K D W + Y Sbjct: 1089 GNKNVLRKGDPLWKDYITY 1107
>ZNFX1_HUMAN (Q9P2E3) NFX1-type zinc finger-containing protein 1| Length = 1918 Score = 48.1 bits (113), Expect = 1e-05 Identities = 27/98 (27%), Positives = 52/98 (53%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 +T Y Q+ ++K + +RV V+++ G+E ++I++S VRS + +G Sbjct: 1157 LTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEG-------KVG 1209 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLL 294 FL R VA++RA+ + +GN ++ K W K++ Sbjct: 1210 FLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKII 1247
>DNA2_YEAST (P38859) DNA replication ATP-dependent helicase DNA2 (EC 3.6.1.-)| Length = 1522 Score = 47.8 bits (112), Expect = 2e-05 Identities = 30/88 (34%), Positives = 46/88 (52%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 +T YR Q+ +KK L + + +QF G++++ IIIS VR + N Sbjct: 1364 MTLYRAQLRLLKKIFNKNVYDGLEILTADQFQGRDKKCIIISMVRRNSQLN------GGA 1417 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHII 264 L R NVA+TRA+S L+I+G+ I Sbjct: 1418 LLKELRRVNVAMTRAKSKLIIIGSKSTI 1445
>YJHR_ECOLI (P39369) Hypothetical protein yjhR| Length = 338 Score = 45.8 bits (107), Expect = 6e-05 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 6/94 (6%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPD------LRVGSVEQFXGQEREVIIISTVRSTVKHNEFD 162 +TP+ QVN IK +L E+ L VG+V G ER +++ S V S KH E Sbjct: 53 VTPFSAQVNAIKMSLRKLEINGKDEQGLLTVGTVHSLQGAERAIVLFSPVYS--KH-EDG 109 Query: 163 RFFNLGFLSNYXRFNVAITRARSLLVIVGNPHII 264 RF + SN NVA++RA+ ++ G+ +I Sbjct: 110 RFLD----SNSTILNVAVSRAKDSFLVFGDMDLI 139
>ZNFX1_MOUSE (Q8R151) NFX1-type zinc finger-containing protein 1| Length = 1909 Score = 45.8 bits (107), Expect = 6e-05 Identities = 25/98 (25%), Positives = 52/98 (53%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 +T Y Q+ ++K + ++V V+++ G+E ++I++S VRS + +G Sbjct: 1150 LTTYTGQLFCLRKLMPVKTFAGIKVHVVDKYQGEENDIILLSLVRSNQEG-------KVG 1202 Query: 181 FLSNYXRFNVAITRARSLLVIVGNPHIITKDRHWDKLL 294 FL R VA++RA+ + +GN ++ K W +++ Sbjct: 1203 FLQIPNRICVALSRAKKGMYCIGNMQMLAKVPLWSRII 1240
>DNA2L_HUMAN (P51530) DNA2-like homolog (EC 3.6.1.-) (DNA replication| ATP-dependent helicase-like homolog) (Fragment) Length = 1077 Score = 42.7 bits (99), Expect = 5e-04 Identities = 26/83 (31%), Positives = 47/83 (56%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 I PYR Q+ KI L + + V +V+++ G+++ ++++S VRS + Sbjct: 957 IAPYRQQL-KIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGE------ 1009 Query: 181 FLSNYXRFNVAITRARSLLVIVG 249 L ++ R NVAITRA+ L+++G Sbjct: 1010 LLKDWRRLNVAITRAKHKLILLG 1032
>YQ12_CAEEL (Q09449) Hypothetical ATP-dependent helicase C05C10.2 in chromosome| II (EC 3.6.1.-) Length = 1551 Score = 39.3 bits (90), Expect = 0.006 Identities = 19/84 (22%), Positives = 42/84 (50%) Frame = +1 Query: 67 LRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLGFLSNYXRFNVAITRARSLLVIV 246 ++ G+V+ F G E+E+II+ + + F+ R NVA++RA+ + +I+ Sbjct: 1392 VKCGTVDAFQGSEKEIIIMCSTNERISD----------FMQLSNRLNVAMSRAKQVTIII 1441 Query: 247 GNPHIITKDRHWDKLLRYCADXGS 318 G+ + + +W ++ G+ Sbjct: 1442 GHLDGLRRANYWSTIVNKIEQNGN 1465
>YET4_YEAST (P40063) Hypothetical 24.4 kDa protein in SSA4-NUP157 intergenic| region Length = 208 Score = 34.3 bits (77), Expect = 0.19 Identities = 15/55 (27%), Positives = 31/55 (56%) Frame = -1 Query: 351 FFWWGKRTSXIRTXVCAVPQELIPVPILSDDMRVSYDNEQRSGTSYCDIEPSIVA 187 F W ++ + ++ + + L P + + R+S +N+Q+SGT + D PS+V+ Sbjct: 14 FDWNEEKAAELQRTGVSFDRSLTPQSLRTSTRRLSEENKQQSGTMHIDTSPSVVS 68
>SDS22_SCHPO (P22194) Protein phosphatases PP1 regulatory subunit sds22| Length = 332 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 93 ELFDTSNS*VRHFKRL*GLLYLVNLWA 13 E+ D SN+ ++H L GL LV LWA Sbjct: 240 EILDVSNNMIKHLSYLAGLKNLVELWA 266
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.9 bits (63), Expect = 7.8 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 I+PY Q K+ L L+ +V+ G E + +I S T Sbjct: 5808 ISPYNSQNFAAKRVL------GLQTQTVDSAQGSEYDYVIYSQTAETAHS---------- 5851 Query: 181 FLSNYXRFNVAITRA-RSLLVIVGN 252 N RFNVAITRA + +L ++ N Sbjct: 5852 --VNVNRFNVAITRAKKGILCVMSN 5874
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.9 bits (63), Expect = 7.8 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 I+PY Q K+ L L+ +V+ G E + +I S T Sbjct: 5808 ISPYNSQNFAAKRVL------GLQTQTVDSAQGSEYDYVIYSQTAETAHS---------- 5851 Query: 181 FLSNYXRFNVAITRA-RSLLVIVGN 252 N RFNVAITRA + +L ++ N Sbjct: 5852 --VNVNRFNVAITRAKKGILCVMSN 5874
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.9 bits (63), Expect = 7.8 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Frame = +1 Query: 1 ITPYRPQVNKIKKALETFEMPDLRVGSVEQFXGQEREVIIISTVRSTVKHNEFDRFFNLG 180 I+PY Q K+ L L+ +V+ G E + +I S T Sbjct: 5808 ISPYNSQNFAAKRVL------GLQTQTVDSAQGSEYDYVIYSQTAETAHS---------- 5851 Query: 181 FLSNYXRFNVAITRA-RSLLVIVGN 252 N RFNVAITRA + +L ++ N Sbjct: 5852 --VNVNRFNVAITRAKKGILCVMSN 5874 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,812,079 Number of Sequences: 219361 Number of extensions: 1067827 Number of successful extensions: 2556 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2479 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2538 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
