ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09f05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068372.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151B11, full insert sequence Length = 3650 Score = 321 bits (162), Expect = 1e-84 Identities = 302/350 (86%) Strand = Plus / Plus Query: 1 attactccatatcgcccacaagttaacaagataaagaaggccctagagacgtttgaaatg 60 |||||||||||||| | ||||||| ||||||||||||||| || ||||| ||||||||| Sbjct: 2581 attactccatatcgacaacaagttgtcaagataaagaaggcacttgagacatttgaaatg 2640 Query: 61 cctgacctaagagttggaagtgtcgaacaattccngggccaagagagggaagtaataatc 120 |||||| | | ||| ||||||||||||||||||| ||| || || |||||| |||||||| Sbjct: 2641 cctgacttgaaagtgggaagtgtcgaacaattccagggtcaggaaagggaaataataatc 2700 Query: 121 atctcgacagtcaggtcaaccgttaagcacaatgagtttgacagattcttcaacctgggg 180 ||||| ||||||||||| || || ||||| ||||||||||||| ||||||||||||||| Sbjct: 2701 atctccacagtcaggtctacagtaaagcataatgagtttgacaaattcttcaacctggga 2760 Query: 181 ttcctgagcaactatngaaggttcaatgtcgcaataactcgtgccagatcgttgctcgtt 240 ||| | ||||| | ||||||||||||| ||||| |||||||||| ||| ||||| || Sbjct: 2761 ttcttaagcaatcacagaaggttcaatgttgcaatcactcgtgccaaatctttgctaatt 2820 Query: 241 atcgtaggaaaccctcatatcatcactaaggatcggcactgggataagctcctgaggtac 300 ||| ||||||||||||| || ||||||||||||||||| ||||||| |||||||||||| Sbjct: 2821 atcataggaaaccctcacattatcactaaggatcggcattgggataggctcctgaggtat 2880 Query: 301 tgcgcagacnatggttcttatcanggatgtccgcttcccccaccagaaga 350 || |||||| |||||||||| || ||||| || ||||| ||||||||||| Sbjct: 2881 tgtgcagacaatggttcttaccaaggatgcccacttccaccaccagaaga 2930
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 240 bits (121), Expect = 4e-60 Identities = 233/271 (85%) Strand = Plus / Minus Query: 1 attactccatatcgcccacaagttaacaagataaagaaggccctagagacgtttgaaatg 60 |||||||||||||| | ||||||| ||||||||||||||| || ||||| ||||||||| Sbjct: 3198708 attactccatatcgacaacaagttgtcaagataaagaaggcacttgagacatttgaaatg 3198649 Query: 61 cctgacctaagagttggaagtgtcgaacaattccngggccaagagagggaagtaataatc 120 |||||| | | ||| ||||||||||||||||||| ||| || || |||||| |||||||| Sbjct: 3198648 cctgacttgaaagtgggaagtgtcgaacaattccagggtcaggaaagggaaataataatc 3198589 Query: 121 atctcgacagtcaggtcaaccgttaagcacaatgagtttgacagattcttcaacctgggg 180 ||||| ||||||||||| || || ||||| ||||||||||||| ||||||||||||||| Sbjct: 3198588 atctccacagtcaggtctacagtaaagcataatgagtttgacaaattcttcaacctggga 3198529 Query: 181 ttcctgagcaactatngaaggttcaatgtcgcaataactcgtgccagatcgttgctcgtt 240 ||| | ||||| | ||||||||||||| ||||| |||||||||| ||| ||||| || Sbjct: 3198528 ttcttaagcaatcacagaaggttcaatgttgcaatcactcgtgccaaatctttgctaatt 3198469 Query: 241 atcgtaggaaaccctcatatcatcactaagg 271 ||| ||||||||||||| || |||||||||| Sbjct: 3198468 atcataggaaaccctcacattatcactaagg 3198438 Score = 87.7 bits (44), Expect = 3e-14 Identities = 72/82 (87%) Strand = Plus / Minus Query: 269 aggatcggcactgggataagctcctgaggtactgcgcagacnatggttcttatcanggat 328 |||||||||| ||||||| |||||||||||| || |||||| |||||||||| || |||| Sbjct: 3198329 aggatcggcattgggataggctcctgaggtattgtgcagacaatggttcttaccaaggat 3198270 Query: 329 gtccgcttcccccaccagaaga 350 | || ||||| ||||||||||| Sbjct: 3198269 gcccacttccaccaccagaaga 3198248
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 240 bits (121), Expect = 4e-60 Identities = 233/271 (85%) Strand = Plus / Minus Query: 1 attactccatatcgcccacaagttaacaagataaagaaggccctagagacgtttgaaatg 60 |||||||||||||| | ||||||| ||||||||||||||| || ||||| ||||||||| Sbjct: 3198819 attactccatatcgacaacaagttgtcaagataaagaaggcacttgagacatttgaaatg 3198760 Query: 61 cctgacctaagagttggaagtgtcgaacaattccngggccaagagagggaagtaataatc 120 |||||| | | ||| ||||||||||||||||||| ||| || || |||||| |||||||| Sbjct: 3198759 cctgacttgaaagtgggaagtgtcgaacaattccagggtcaggaaagggaaataataatc 3198700 Query: 121 atctcgacagtcaggtcaaccgttaagcacaatgagtttgacagattcttcaacctgggg 180 ||||| ||||||||||| || || ||||| ||||||||||||| ||||||||||||||| Sbjct: 3198699 atctccacagtcaggtctacagtaaagcataatgagtttgacaaattcttcaacctggga 3198640 Query: 181 ttcctgagcaactatngaaggttcaatgtcgcaataactcgtgccagatcgttgctcgtt 240 ||| | ||||| | ||||||||||||| ||||| |||||||||| ||| ||||| || Sbjct: 3198639 ttcttaagcaatcacagaaggttcaatgttgcaatcactcgtgccaaatctttgctaatt 3198580 Query: 241 atcgtaggaaaccctcatatcatcactaagg 271 ||| ||||||||||||| || |||||||||| Sbjct: 3198579 atcataggaaaccctcacattatcactaagg 3198549 Score = 87.7 bits (44), Expect = 3e-14 Identities = 72/82 (87%) Strand = Plus / Minus Query: 269 aggatcggcactgggataagctcctgaggtactgcgcagacnatggttcttatcanggat 328 |||||||||| ||||||| |||||||||||| || |||||| |||||||||| || |||| Sbjct: 3198440 aggatcggcattgggataggctcctgaggtattgtgcagacaatggttcttaccaaggat 3198381 Query: 329 gtccgcttcccccaccagaaga 350 | || ||||| ||||||||||| Sbjct: 3198380 gcccacttccaccaccagaaga 3198359
>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083G16, complete sequence Length = 145590 Score = 240 bits (121), Expect = 4e-60 Identities = 233/271 (85%) Strand = Plus / Minus Query: 1 attactccatatcgcccacaagttaacaagataaagaaggccctagagacgtttgaaatg 60 |||||||||||||| | ||||||| ||||||||||||||| || ||||| ||||||||| Sbjct: 23581 attactccatatcgacaacaagttgtcaagataaagaaggcacttgagacatttgaaatg 23522 Query: 61 cctgacctaagagttggaagtgtcgaacaattccngggccaagagagggaagtaataatc 120 |||||| | | ||| ||||||||||||||||||| ||| || || |||||| |||||||| Sbjct: 23521 cctgacttgaaagtgggaagtgtcgaacaattccagggtcaggaaagggaaataataatc 23462 Query: 121 atctcgacagtcaggtcaaccgttaagcacaatgagtttgacagattcttcaacctgggg 180 ||||| ||||||||||| || || ||||| ||||||||||||| ||||||||||||||| Sbjct: 23461 atctccacagtcaggtctacagtaaagcataatgagtttgacaaattcttcaacctggga 23402 Query: 181 ttcctgagcaactatngaaggttcaatgtcgcaataactcgtgccagatcgttgctcgtt 240 ||| | ||||| | ||||||||||||| ||||| |||||||||| ||| ||||| || Sbjct: 23401 ttcttaagcaatcacagaaggttcaatgttgcaatcactcgtgccaaatctttgctaatt 23342 Query: 241 atcgtaggaaaccctcatatcatcactaagg 271 ||| ||||||||||||| || |||||||||| Sbjct: 23341 atcataggaaaccctcacattatcactaagg 23311 Score = 87.7 bits (44), Expect = 3e-14 Identities = 72/82 (87%) Strand = Plus / Minus Query: 269 aggatcggcactgggataagctcctgaggtactgcgcagacnatggttcttatcanggat 328 |||||||||| ||||||| |||||||||||| || |||||| |||||||||| || |||| Sbjct: 23202 aggatcggcattgggataggctcctgaggtattgtgcagacaatggttcttaccaaggat 23143 Query: 329 gtccgcttcccccaccagaaga 350 | || ||||| ||||||||||| Sbjct: 23142 gcccacttccaccaccagaaga 23121
>gb|AC084407.10| Mus Musculus Strain C57BL6/J Chromosome 11 Clone RP23-271O13, complete sequence Length = 239837 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 467 acaatcaagacccttctgacc 487 ||||||||||||||||||||| Sbjct: 108002 acaatcaagacccttctgacc 107982
>emb|AL593858.20| Mouse DNA sequence from clone RP23-151M22 on chromosome 11, complete sequence Length = 200298 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 467 acaatcaagacccttctgacc 487 ||||||||||||||||||||| Sbjct: 140577 acaatcaagacccttctgacc 140557
>gb|AC158990.2| Mus musculus BAC clone RP23-416E18 from chromosome 13, complete sequence Length = 191036 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tcccccaccagaagaagagg 355 |||||||||||||||||||| Sbjct: 88057 tcccccaccagaagaagagg 88038
>gb|AC163402.5| Mus musculus chromosome 7, clone RP23-290H21, complete sequence Length = 240582 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 accagaagaagaggttagat 361 |||||||||||||||||||| Sbjct: 195166 accagaagaagaggttagat 195147
>gb|AC116694.9| Mus musculus chromosome 7, clone RP24-386G12, complete sequence Length = 195638 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 accagaagaagaggttagat 361 |||||||||||||||||||| Sbjct: 160350 accagaagaagaggttagat 160369
>gb|AY169814.1| HIV-1 isolate 99USTWLA from USA, complete genome Length = 9186 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 cctgctggtgatggttgggg 434 |||||||||||||||||||| Sbjct: 7924 cctgctggtgatggttgggg 7905
>gb|AC128666.4| Mus musculus BAC clone RP24-153M4 from chromosome 7, complete sequence Length = 138751 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 accagaagaagaggttagat 361 |||||||||||||||||||| Sbjct: 69569 accagaagaagaggttagat 69550
>ref|XM_777594.1| PREDICTED: Strongylocentrotus purpuratus similar to CG31349-PB, isoform B (LOC577362), mRNA Length = 4811 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 tcccccaccagaagaagagg 355 |||||||||||||||||||| Sbjct: 3585 tcccccaccagaagaagagg 3604
>emb|AL606972.12| Zebrafish DNA sequence from clone RP71-76A6 in linkage group 10 Contains part of a novel gene for a protein similar to vertebrate ciliary neurotrophic factor receptor alpha precursor (CNTFR alpha) and a CpG island, complete sequence Length = 83704 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 atggttgggggtacaaccaa 444 |||||||||||||||||||| Sbjct: 52843 atggttgggggtacaaccaa 52824
>emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6 Length = 293250 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 acaagataaagaaggccctagaga 49 ||||| |||||||||||||||||| Sbjct: 43435 acaagctaaagaaggccctagaga 43412
>gb|AF383260.1| HIV-1 99USTWLA from USA envelope glycoprotein (env) gene, complete cds Length = 2628 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 cctgctggtgatggttgggg 434 |||||||||||||||||||| Sbjct: 2212 cctgctggtgatggttgggg 2193
>dbj|AK161420.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930568A15 product:unclassifiable, full insert sequence Length = 2020 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 tcccccaccagaagaagagg 355 |||||||||||||||||||| Sbjct: 992 tcccccaccagaagaagagg 1011
>gb|AC074229.53| Mus musculus strain C57BL/6J clone rp23-242n21 map 5, complete sequence Length = 158661 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 cttcccccaccagaagaaga 353 |||||||||||||||||||| Sbjct: 67288 cttcccccaccagaagaaga 67269
>gb|AC122716.2| Homo sapiens chromosome 5 clone RP11-567A12, complete sequence Length = 171057 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ttgacagattcttcaacctg 177 |||||||||||||||||||| Sbjct: 42066 ttgacagattcttcaacctg 42085
>emb|AL831764.16| Mouse DNA sequence from clone RP23-203A3 on chromosome 2, complete sequence Length = 195821 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 agtttgacagattcttcaac 174 |||||||||||||||||||| Sbjct: 193531 agtttgacagattcttcaac 193512 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,062,508 Number of Sequences: 3902068 Number of extensions: 3062508 Number of successful extensions: 46539 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46493 Number of HSP's gapped (non-prelim): 46 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
