ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09e09 |
|---|---|
| Clone Library Name | barley_pub |
>NUDT4_ARATH (Q9LE73) Nudix hydrolase 4 (EC 3.6.1.-) (AtNUDT4) (ADP-ribose| pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22) Length = 207 Score = 96.3 bits (238), Expect = 3e-20 Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 4/123 (3%) Frame = +2 Query: 89 PLKIPRMAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX----ISSQK 256 P +I ++ LV+R GR+LQRY + G R VVGC+PY +S+QK Sbjct: 34 PAQIEKVVSLVSRTGRDLQRYDHA-GYRQVVGCVPYRYKKQEVNGVETQVIQVLLVSAQK 92 Query: 257 GHGMMFPKGGWELDESMDDXXXXXXXXXXGVSGDMGKVLGCWHYQSRRYQTTYEGIMYPL 436 G GM+FPKGGWE DESM++ GV+G++ + LG W Y+S+R+ ++G M+ L Sbjct: 93 GKGMLFPKGGWETDESMEEAALRETIEEAGVTGELEEKLGKWQYKSKRHSIIHDGYMFAL 152 Query: 437 RVT 445 V+ Sbjct: 153 LVS 155
>NUD17_ARATH (Q9ZU95) Nudix hydrolase 17, mitochondrial precursor (EC 3.6.1.-)| (AtNUDT17) Length = 182 Score = 95.5 bits (236), Expect = 5e-20 Identities = 50/119 (42%), Positives = 67/119 (56%), Gaps = 3/119 (2%) Frame = +2 Query: 98 IPRMAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX---ISSQKGHGM 268 + +M L +R GR+ QRY+ G R VVGC+PY ISSQKGH + Sbjct: 3 VEKMVCLASRTGRQFQRYNK--GRRQVVGCVPYRFKLSNDGKISDEVEVLVISSQKGHAL 60 Query: 269 MFPKGGWELDESMDDXXXXXXXXXXGVSGDMGKVLGCWHYQSRRYQTTYEGIMYPLRVT 445 MFPKGGWELDES+++ GV G++ LG W + S+ T YEG+M+P+ VT Sbjct: 61 MFPKGGWELDESVEEAASRECLEEAGVLGNVEHQLGKWDFLSKSRGTYYEGLMFPMLVT 119
>NUD18_ARATH (Q9LQU5) Nudix hydrolase 18, mitochondrial precursor (EC 3.6.1.-)| (AtNUDT18) Length = 176 Score = 95.1 bits (235), Expect = 7e-20 Identities = 51/115 (44%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Frame = +2 Query: 107 MAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX---ISSQKGHGMMFP 277 M LV+R GR+ QRY+ G R VVGCIPY ISSQKGH +MFP Sbjct: 1 MVCLVSRTGRQSQRYNK--GRRQVVGCIPYRLKISSDGTISDEFEVLVISSQKGHALMFP 58 Query: 278 KGGWELDESMDDXXXXXXXXXXGVSGDMGKVLGCWHYQSRRYQTTYEGIMYPLRV 442 KGGWELDES+++ GV G++ + LG W + S+ T YEG M+P+ V Sbjct: 59 KGGWELDESVEEAASRESLEEAGVVGNVERQLGKWDFLSKSKGTFYEGFMFPMLV 113
>NUD21_ARATH (Q8VY81) Nudix hydrolase 21, chloroplast precursor (EC 3.6.1.-)| (AtNUDT21) Length = 198 Score = 93.2 bits (230), Expect = 3e-19 Identities = 45/119 (37%), Positives = 69/119 (57%) Frame = +2 Query: 89 PLKIPRMAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXXISSQKGHGM 268 P ++ LV+R GR+LQRY+ + G R VVGC+PY + +KG GM Sbjct: 35 PTPSEKVVSLVSRTGRDLQRYNTA-GYRQVVGCVPYRYKKHGGGEIEVLLISAQKKGKGM 93 Query: 269 MFPKGGWELDESMDDXXXXXXXXXXGVSGDMGKVLGCWHYQSRRYQTTYEGIMYPLRVT 445 + PKGGWE+DES+++ GV+G + + LG W Y+S+R+ ++G M+PL V+ Sbjct: 94 LLPKGGWEIDESIEEAALRETIEEAGVTGQLEESLGKWQYKSKRHTMIHDGHMFPLLVS 152
>NUD16_ARATH (Q9LHK1) Nudix hydrolase 16, mitochondrial precursor (EC 3.6.1.-)| (AtNUDT16) Length = 180 Score = 65.5 bits (158), Expect = 6e-11 Identities = 44/124 (35%), Positives = 59/124 (47%), Gaps = 12/124 (9%) Frame = +2 Query: 107 MAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX------ISSQKGHGM 268 M LVAR GR QRY G R+V GCIP+ ISS G G+ Sbjct: 1 MCDLVARTGRLQQRYE--DGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGL 58 Query: 269 MFPKGGWELDESMDDXXXXXXXXXXGVSGDMGKVLGCWHYQSRRYQTTY--EGI----MY 430 +FPKGGWE DE++ + GV G + LG + ++S+ +Q + EG+ MY Sbjct: 59 LFPKGGWENDETVREAAAREAVEEAGVRGILMDFLGNYEFKSKSHQDEFSPEGLCKAAMY 118 Query: 431 PLRV 442 L V Sbjct: 119 ALYV 122
>NUD12_ARATH (Q93ZY7) Nudix hydrolase 12, mitochondrial precursor (EC 3.6.1.-)| (AtNUDT12) Length = 203 Score = 60.5 bits (145), Expect = 2e-09 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 16/129 (12%) Frame = +2 Query: 107 MAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX---------ISSQKG 259 M+VL +R GR+ QRY + R+V GCIPY +SS Sbjct: 1 MSVLSSRTGRDRQRYDNNF--RLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNR 58 Query: 260 HGMMFPKGGWELDESMDDXXXXXXXXXXGVSGDMGKV-LGCWHYQSRRYQTTYE------ 418 H ++FPKGGWE DE++ + GV G + ++ LG W ++S+ E Sbjct: 59 HDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCK 118 Query: 419 GIMYPLRVT 445 G M+ L+VT Sbjct: 119 GYMFALKVT 127
>NUD13_ARATH (Q52K88) Nudix hydrolase 13, mitochondrial precursor (EC 3.6.1.-)| (AtNUDT13) Length = 202 Score = 55.5 bits (132), Expect = 6e-08 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%) Frame = +2 Query: 107 MAVLVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXX--------ISSQKGH 262 M+ L AR GR+ QRY + R+V GCIPY ISS H Sbjct: 1 MSNLSARTGRDHQRYDNNF--RLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRH 58 Query: 263 GMMFPKGGWELDESMDDXXXXXXXXXXGVSGDMGK-VLGCWHYQSR 397 ++FPKGGWE DE++ + GV G + + LG W ++S+ Sbjct: 59 DLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSK 104
>APS1_SCHPO (Q09790) Diphosphoinositol polyphosphate phosphohydrolase aps1 (EC| 3.6.1.52) (Diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase) (EC 3.6.1.-) (Ap6A hydrolase) Length = 210 Score = 42.4 bits (98), Expect = 5e-04 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 1/88 (1%) Frame = +2 Query: 116 LVARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXXISSQKGH-GMMFPKGGWE 292 + +R+GR R++ TG R+ G + +SS K H + PKGGWE Sbjct: 24 MTSREGRTKNRFNPITGARLAAGVV------ALSADKRKVLLVSSAKKHPSWVVPKGGWE 77 Query: 293 LDESMDDXXXXXXXXXXGVSGDMGKVLG 376 DES+ G+ G + + LG Sbjct: 78 ADESVQQAALREGWEEGGLVGHITRSLG 105
>DDP1_YEAST (Q99321) Diphosphoinositol polyphosphate phosphohydrolase DDP1 (EC| 3.6.1.52) (Diadenosine and diphosphoinositol polyphosphate phosphohydrolase 1) (EC 3.6.1.-) (Diadenosine 5',5'''-P1,P6-hexaphosphate hydrolase) (AP6A hydrolase) Length = 187 Score = 35.4 bits (80), Expect = 0.066 Identities = 24/60 (40%), Positives = 27/60 (45%) Frame = +2 Query: 122 ARQGRELQRYSASTGGRIVVGCIPYXXXXXXXXXXXXXXXISSQKGHGMMFPKGGWELDE 301 AR+GRE Q YS TG R+V GCI SS + PKGG E DE Sbjct: 15 AREGRENQVYSPVTGARLVAGCI-----CLTPDKKQVLMITSSAHKKRWIVPKGGVEKDE 69
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 31.2 bits (69), Expect = 1.2 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = +3 Query: 126 GRGASCSGTARAPAGASWWGASRTGCARGKARASWRCW 239 G GA+ +G P G WG+ C R R W CW Sbjct: 1587 GGGAAAAGRRDRPGGGGGWGSGPPPCRRCGHRC-WLCW 1623
>DFNA5_HORSE (Q7YS54) Nonsyndromic hearing impairment protein 5 homolog| Length = 497 Score = 30.4 bits (67), Expect = 2.1 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%) Frame = -2 Query: 337 LEGLAPGRVVHGLVQLPPALGEHHAVPLLRADH---QHLQLA-LAFPLAHPVRDAPHHDA 170 LE AP + + +++L L LLR H +H + + + FP A ++D P D Sbjct: 209 LEIPAPTTIAYSVIELYVKLDGQFEFCLLRGKHGGFEHQRRSDIVFPDAGALQDFPFWDV 268 Query: 169 PAGARAVPLQLAPLPRHKNG 110 P + +P PL K G Sbjct: 269 PDAGQGLPTPDGPLSVLKQG 288
>ELI5_HORVU (P14895) High molecular mass early light-inducible protein HV58,| chloroplast precursor (ELIP) Length = 231 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +2 Query: 62 VVATKRASSPLKIPRMAVLVARQGRELQRYSASTGGRIVVGCIP 193 VV A SP+ PR LV R E+ + A T V GC+P Sbjct: 12 VVGRSAARSPVVAPRRRTLVVRAQTEVSLHVARTITVSVFGCLP 55
>ATF6B_MOUSE (O35451) Cyclic AMP-dependent transcription factor ATF-6 beta| (Activating transcription factor 6 beta) (ATF6-beta) (cAMP-responsive element-binding protein-like 1) (cAMP response element-binding protein-related protein) (Creb-rp) Length = 699 Score = 29.3 bits (64), Expect = 4.7 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 10/103 (9%) Frame = -2 Query: 328 LAPGRVVHGLVQLPPALGEHHAVPLLRADHQHLQLALAFPLAHPVRDAPHHDAPAGARAV 149 L P VV V +PP G A LL+ Q ++ + +R P APA R Sbjct: 241 LQPKPVVLTTVPVPPRAGPTSAAVLLQPLVQQPAVSPVVLIQGAIRVQPEGPAPAAPRPE 300 Query: 148 PLQLAPLPRHKNGHPXN-----L*RARRSFR-----CNNKKKK 50 + P P N P L R +R + C +++KK Sbjct: 301 RKSIVPAPMPGNSCPPEVDAKLLKRQQRMIKNRESACQSRRKK 343
>ZNHI4_MOUSE (Q99PT3) Zinc finger HIT domain-containing protein 4| (PAP-1-associated protein 1) (PAPA-1) (High mobility group AT-hook 1-like 4) Length = 345 Score = 28.9 bits (63), Expect = 6.2 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = -1 Query: 71 LQQQEEEDDERWMDGCKKRQL 9 L+ QEEE+++RW+D +K +L Sbjct: 128 LEGQEEEEEQRWLDALEKGEL 148
>GSHAB_STRMU (Q8DW15) Glutathione biosynthesis bifunctional protein gshAB| (Gamma-GCS-GS) (GCS-GS) [Includes: Glutamate--cysteine ligase (EC 6.3.2.2) (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS); Glutathione synthetase (EC 6.3.2.3) (Glutathione sy Length = 754 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = -2 Query: 334 EGLAPGRVVHGLVQLP--PALGEHHAVPLLRADHQHLQLALAFPLAHPVRD 188 E L + H L Q P ALG P ++ D+ Q+ L P+AH ++ Sbjct: 26 ESLRINKTNHRLAQTPHPTALGSRQFHPYIQTDYSESQMELITPVAHSSKE 76
>VGNB_RCMV (P35930) Genome polyprotein B (RNA1 polyprotein) [Contains:| Protease cofactor (32 kDa protein); Putative helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (Membrane-binding protein) (58 kDa protein); Viral genome-linked protein (VPg); Picornain Length = 1864 Score = 28.5 bits (62), Expect = 8.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -3 Query: 90 GLDARFVATTXXXXX*EMDGWLQEAAAV 7 GL+ RF+A ++DGWLQ +A+ Sbjct: 377 GLETRFLADAALVFGEDVDGWLQRISAL 404 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,596,292 Number of Sequences: 219361 Number of extensions: 879276 Number of successful extensions: 2593 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2489 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2580 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
