ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09e08 |
|---|---|
| Clone Library Name | barley_pub |
>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)| Length = 657 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/34 (50%), Positives = 23/34 (67%) Frame = -2 Query: 177 TSAAASD*SSWVRRTAXGGPWSSEVVSRTRQLAT 76 T+AA + ++ VRRTA G +S+VVS TR AT Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTRGEAT 419
>PCDG3_PANTR (Q5DRB7) Protocadherin gamma A3 precursor (PCDH-gamma-A3)| Length = 932 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = +2 Query: 89 RVLETTSDDQGPPXAVLLTQD----DQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 ++L T SD PP + ++ + DQ+D A ++ PALPT + L+ + P Sbjct: 529 KLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>PCDG3_HUMAN (Q9Y5H0) Protocadherin gamma A3 precursor (PCDH-gamma-A3)| Length = 932 Score = 30.8 bits (68), Expect = 1.5 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = +2 Query: 89 RVLETTSDDQGPPXAVLLTQD----DQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 ++L T SD PP + ++ + DQ+D A ++ PALPT + L+ + P Sbjct: 529 KLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) Length = 1600 Score = 29.6 bits (65), Expect = 3.3 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +2 Query: 95 LETTSDDQGPPXAVLLTQDDQSDAAADVTLPALPTP---AGENIVLSHGAPTP 244 LE + + P AV++ DD+S AA P LP P G S +PTP Sbjct: 222 LEPQPNGESPQVAVIIRPDDRSQGAAIGGRPGLPGPEHSPGTESQPSSPSPTP 274
>PCDG8_HUMAN (Q9Y5G5) Protocadherin gamma A8 precursor (PCDH-gamma-A8)| Length = 932 Score = 29.3 bits (64), Expect = 4.3 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Frame = +2 Query: 89 RVLETTSDDQGPPXAVLLTQD----DQSDAAADVTLPALPTPAGENIVLS 226 ++L T SD PP + ++ DQ+D A ++ PALPT + L+ Sbjct: 529 QLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELA 578
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 28.9 bits (63), Expect = 5.7 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +2 Query: 152 DQSDAAADVTLPALPTPAGENIVLSHGAPTPMLRLPSH 265 D AA + + P++PTP G + H T M ++ H Sbjct: 2302 DSPGAATEYSEPSVPTPPGAGVKEEHDQSTQMSKVKKH 2339
>SNX19_HUMAN (Q92543) Sorting nexin-19| Length = 992 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +2 Query: 326 VHPAVDVVPAELARGEKQEPREAVAEPDPDSRPDTD 433 V VD + R E Q P E ++E + +S+P T+ Sbjct: 681 VSAIVDTLKTAFPRSEPQSPTEELSEAETESKPQTE 716
>FUSC3_FUSCU (Q8J1X7) Allergen Fus c 3| Length = 450 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/57 (29%), Positives = 23/57 (40%) Frame = +2 Query: 221 LSHGAPTPMLRLPSHRSTCXXXXXXXXXXXXGLARVHPAVDVVPAELARGEKQEPRE 391 L HGA TP +R PSH + + P AR +K+EPR+ Sbjct: 232 LGHGASTPKVRTPSHHVSSNPWAEINEPTGGDNDNLAPVTRPRKPARARRQKKEPRK 288
>PCDG9_HUMAN (Q9Y5G4) Protocadherin gamma A9 precursor (PCDH-gamma-A9)| Length = 932 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +2 Query: 101 TTSDDQGPPXA----VLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 T SD PP + + L DQ+D A ++ PALPT + L+ + P Sbjct: 533 TASDSGSPPLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>PCDGA_PANTR (Q5DRC1) Protocadherin gamma A10 precursor (PCDH-gamma-A10)| Length = 936 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = +2 Query: 95 LETTSDDQGPP-----XAVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 ++ T+ D G P ++ L DQ+D A ++ PALPT + L+ + P Sbjct: 534 MQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 588
>PCDGA_HUMAN (Q9Y5H3) Protocadherin gamma A10 precursor (PCDH-gamma-A10)| Length = 936 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = +2 Query: 95 LETTSDDQGPP-----XAVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 ++ T+ D G P ++ L DQ+D A ++ PALPT + L+ + P Sbjct: 534 MQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 588
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 28.5 bits (62), Expect = 7.4 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = +2 Query: 95 LETTSDDQGPPXAVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 LE ++ + P AV++ DD+S A P LP P +P+P Sbjct: 215 LEPQANGETPQVAVIVRPDDRSQGAIIADRPGLPGPEHSPSESQPSSPSP 264
>Y1053_ARCFU (O29209) Hypothetical protein AF1053| Length = 269 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 6/38 (15%) Frame = +2 Query: 332 PAVDVVPAELARGEKQEPR------EAVAEPDPDSRPD 427 P + VVPA++ K EP E EP+P++ P+ Sbjct: 76 PQIQVVPAQIPEPPKPEPEVEQPETETGPEPEPEAEPE 113
>NIFE_RHISN (P55673) Nitrogenase iron-molybdenum cofactor biosynthesis protein| nifE Length = 496 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +2 Query: 380 EPREAVAEPDPDSRPDTDA 436 E R A EP P++RPDTDA Sbjct: 460 ESRPATQEPLPNTRPDTDA 478
>PCDG6_PANTR (Q5DRB4) Protocadherin gamma A6 precursor (PCDH-gamma-A6)| Length = 932 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +2 Query: 101 TTSDDQGPPXAVLLTQD----DQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 T SD PP + ++ DQ+D A ++ PALPT + L+ + P Sbjct: 533 TASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>PCDG6_HUMAN (Q9Y5G7) Protocadherin gamma A6 precursor (PCDH-gamma-A6)| Length = 932 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +2 Query: 101 TTSDDQGPPXAVLLTQD----DQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 T SD PP + ++ DQ+D A ++ PALPT + L+ + P Sbjct: 533 TASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>PDC6I_HUMAN (Q8WUM4) Programmed cell death 6-interacting protein| (PDCD6-interacting protein) (ALG-2-interacting protein 1) (Hp95) Length = 868 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +2 Query: 140 LTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTPMLRLP 259 L +D Q A + + P++PTPA ++ APTP P Sbjct: 705 LLKDLQQSIAREPSAPSIPTPAYQSSPAGGHAPTPPTPAP 744 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,561,327 Number of Sequences: 219361 Number of extensions: 582251 Number of successful extensions: 2595 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2468 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2586 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
