ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein) 85 6e-17
2ECP44_DAUCA (Q9XJ56) Phosphoprotein ECPP44 30 2.3
3RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RD... 29 3.9
4RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (R... 29 3.9
5ETBR2_HUMAN (O60883) Endothelin B receptor-like protein 2 precur... 29 5.1
6ETBR2_RAT (Q9QYC5) Endothelin B receptor-like protein 2 precurso... 28 6.7
7ETBR2_MOUSE (Q99JG2) Endothelin B receptor-like protein 2 precur... 28 6.7

>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)|
          Length = 262

 Score = 85.1 bits (209), Expect = 6e-17
 Identities = 56/114 (49%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
 Frame = +1

Query: 97  MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 264
           MEDERSTQSYQG EA +QVEVTDR                      VTGM          
Sbjct: 1   MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60

Query: 265 -XXXXXDGEKKETLFSKLHRXXXXXXXXXXXXXXXXVIDENGEVIKRKKKKGLK 423
                 DGEKKETLFSKLHR                VID+NGEVIKRKKKKGLK
Sbjct: 61  KKEEHEDGEKKETLFSKLHR-SSSSSSSSSDEEEEEVIDDNGEVIKRKKKKGLK 113



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>ECP44_DAUCA (Q9XJ56) Phosphoprotein ECPP44|
          Length = 258

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 292 KETLFSKLHRXXXXXXXXXXXXXXXXVIDENGEVIKRKKKKGLK 423
           K +L  KLHR                 ++E GE  K+K+KKGLK
Sbjct: 72  KPSLLEKLHRSGSSSSSSSSDEE----VEEGGEKKKKKEKKGLK 111



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>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein|
           VP1)
          Length = 881

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
 Frame = -1

Query: 93  RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 4
           R+ S  LK    T+GS +K+ +S   DYW+L+CG L
Sbjct: 283 RELSTLLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 318



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>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein|
           VP1)
          Length = 878

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 6/36 (16%)
 Frame = -1

Query: 93  RDRSVQLK----TRGS*RKQRIS--KDYWFLACGFL 4
           R+ S  LK    T+GS +K+ +S   DYW+L+CG L
Sbjct: 282 RELSALLKQGAGTKGSNKKKLLSMLSDYWYLSCGLL 317



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>ETBR2_HUMAN (O60883) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)|
           (G-protein coupled receptor 37-like 1)
          Length = 481

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 47  CFL*LPRVFSCTDRSRSWRMRGAPSHTRELR 139
           C+  LP +F+ T +  +WR+RG P    E R
Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKSECR 346



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>ETBR2_RAT (Q9QYC5) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)|
           (G-protein coupled receptor 37-like 1) (G-protein
           coupled receptor CNS2)
          Length = 481

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 47  CFL*LPRVFSCTDRSRSWRMRGAPSHTRELR 139
           C+  LP +F+ T +  +WR+RG P    E R
Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKPECR 346



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>ETBR2_MOUSE (Q99JG2) Endothelin B receptor-like protein 2 precursor (ETBR-LP-2)|
           (G-protein coupled receptor 37-like 1)
          Length = 481

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 47  CFL*LPRVFSCTDRSRSWRMRGAPSHTRELR 139
           C+  LP +F+ T +  +WR+RG P    E R
Sbjct: 316 CYFCLPILFTVTCQLVTWRVRGPPGRKPECR 346


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,567,629
Number of Sequences: 219361
Number of extensions: 358624
Number of successful extensions: 723
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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