Clone Name | bart09e05 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009306.1| Triticum aestivum clone wlm1.pk0017.b7:fis, full insert mRNA sequence Length = 1376 Score = 737 bits (372), Expect = 0.0 Identities = 420/437 (96%) Strand = Plus / Plus Query: 65 tgggcggttgcatccacccgtcagccaagtcagccatggcgccggaccacggctccnagg 124 ||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||| Sbjct: 10 tgggcggttgcatccacccgtcagccaagccaagcatggcgccggaccacggctccaagg 69 Query: 125 tcgacatctccttcgccggccgcttcacagccagcgccatcgccgcctgcttcgccgaga 184 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 70 tcgacatctccttcgccggccgcttcaccgccagcgccatcgccgcctgcttcgccgaga 129 Query: 185 tcaccacaatccccctcgacacggccaaggtcaggctgcagctgcagaagaaggccgtcg 244 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 130 tcaccacgatccccctcgacacggccaaggtcaggctgcagctgcagaagaaggccatcg 189 Query: 245 ccggggatctcgctgggcccaagtaccgcggtctgctcggcactgccgccaccatcgccn 304 |||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| Sbjct: 190 ccggggatctcgctgggcccaagtaccgtggcctgctcggcaccgccgccaccatcgcca 249 Query: 305 aggaggaaggcgccgccgcgctctggaagggcatcgtccctggcctccaccgccngtgca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 250 aggaggaaggcgccgccgcgctctggaagggcatcgtccctggcctccaccgccagtgca 309 Query: 365 tctacgggggtctccgcattggtctctatgaacccgtcaaagccttctatgttggtgaga 424 ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct: 310 tctacggcggtctccgcattggtctctatgagcccgtcaaatccttctatgttggtgaga 369 Query: 425 accatgttggggatgtacctttgtccaagaagatagccgctggcttcaccactggtgctc 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 370 accatgttggggatgtacctttgtccaagaagatagccgctggcttcaccactggtgccc 429 Query: 485 ttgcaattgctgtggcc 501 ||||||| ||||||||| Sbjct: 430 ttgcaatcgctgtggcc 446
>gb|BT016716.1| Zea mays clone Contig549 mRNA sequence Length = 1326 Score = 236 bits (119), Expect = 6e-59 Identities = 195/221 (88%) Strand = Plus / Plus Query: 262 cccaagtaccgcggtctgctcggcactgccgccaccatcgccnaggaggaaggcgccgcc 321 |||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||| Sbjct: 264 cccaagtaccgcggcctgctcggaactgccgccaccatcgctagggaggaaggggccgca 323 Query: 322 gcgctctggaagggcatcgtccctggcctccaccgccngtgcatctacgggggtctccgc 381 ||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||| Sbjct: 324 gcgctctggaagggcatcgtcccgggcctccaccgacagtgcatctacggggggctccgc 383 Query: 382 attggtctctatgaacccgtcaaagccttctatgttggtgagaaccatgttggggatgta 441 ||||| ||||| || || |||||| ||||||| || || | |||| ||||||||||| Sbjct: 384 attggcctctacgagcctgtcaaatccttctacgtcggcaaagaccacgttggggatgtc 443 Query: 442 cctttgtccaagaagatagccgctggcttcaccactggtgc 482 ||||||||||||||||||||||| |||||||| |||||||| Sbjct: 444 cctttgtccaagaagatagccgccggcttcacaactggtgc 484 Score = 153 bits (77), Expect = 7e-34 Identities = 124/140 (88%) Strand = Plus / Plus Query: 108 ggaccacggctccnaggtcgacatctccttcgccggccgcttcacagccagcgccatcgc 167 ||||||||||||| ||| |||||||||||||||||| |||||||| |||||||||||||| Sbjct: 92 ggaccacggctccaagggcgacatctccttcgccggacgcttcacggccagcgccatcgc 151 Query: 168 cgcctgcttcgccgagatcaccacaatccccctcgacacggccaaggtcaggctgcagct 227 || |||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| Sbjct: 152 agcatgcttcgcagagatatgtaccatcccgctcgacacggccaaggtcaggctccagct 211 Query: 228 gcagaagaaggccgtcgccg 247 ||||||||| | |||||||| Sbjct: 212 gcagaagaacgtcgtcgccg 231
>gb|AF461732.1| Zea mays uncoupling protein mRNA, complete cds; nuclear gene for mitochondrial product Length = 1243 Score = 236 bits (119), Expect = 6e-59 Identities = 195/221 (88%) Strand = Plus / Plus Query: 262 cccaagtaccgcggtctgctcggcactgccgccaccatcgccnaggaggaaggcgccgcc 321 |||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||| Sbjct: 239 cccaagtaccgcggcctgctcggaactgccgccaccatcgctagggaggaaggggccgca 298 Query: 322 gcgctctggaagggcatcgtccctggcctccaccgccngtgcatctacgggggtctccgc 381 ||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||| Sbjct: 299 gcgctctggaagggcatcgtcccgggcctccaccgacagtgcatctacggggggctccgc 358 Query: 382 attggtctctatgaacccgtcaaagccttctatgttggtgagaaccatgttggggatgta 441 ||||| ||||| || || |||||| ||||||| || || | |||| ||||||||||| Sbjct: 359 attggcctctacgagcctgtcaaatccttctacgtcggcaaagaccacgttggggatgtc 418 Query: 442 cctttgtccaagaagatagccgctggcttcaccactggtgc 482 ||||||||||||||||||||||| |||||||| |||||||| Sbjct: 419 cctttgtccaagaagatagccgccggcttcacaactggtgc 459 Score = 153 bits (77), Expect = 7e-34 Identities = 124/140 (88%) Strand = Plus / Plus Query: 108 ggaccacggctccnaggtcgacatctccttcgccggccgcttcacagccagcgccatcgc 167 ||||||||||||| ||| |||||||||||||||||| |||||||| |||||||||||||| Sbjct: 67 ggaccacggctccaagggcgacatctccttcgccggacgcttcacggccagcgccatcgc 126 Query: 168 cgcctgcttcgccgagatcaccacaatccccctcgacacggccaaggtcaggctgcagct 227 || |||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| Sbjct: 127 agcatgcttcgcagagatatgtaccatcccgctcgacacggccaaggtcaggctccagct 186 Query: 228 gcagaagaaggccgtcgccg 247 ||||||||| | |||||||| Sbjct: 187 gcagaagaacgtcgtcgccg 206
>gb|AY105357.1| Zea mays PCO091508 mRNA sequence Length = 1422 Score = 236 bits (119), Expect = 6e-59 Identities = 195/221 (88%) Strand = Plus / Plus Query: 262 cccaagtaccgcggtctgctcggcactgccgccaccatcgccnaggaggaaggcgccgcc 321 |||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||| Sbjct: 241 cccaagtaccgcggcctgctcggaactgccgccaccatcgctagggaggaaggggccgca 300 Query: 322 gcgctctggaagggcatcgtccctggcctccaccgccngtgcatctacgggggtctccgc 381 ||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||| Sbjct: 301 gcgctctggaagggcatcgtcccgggcctccaccgacagtgcatctacggggggctccgc 360 Query: 382 attggtctctatgaacccgtcaaagccttctatgttggtgagaaccatgttggggatgta 441 ||||| ||||| || || |||||| ||||||| || || | |||| ||||||||||| Sbjct: 361 attggcctctacgagcctgtcaaatccttctacgtcggcaaagaccacgttggggatgtc 420 Query: 442 cctttgtccaagaagatagccgctggcttcaccactggtgc 482 ||||||||||||||||||||||| |||||||| |||||||| Sbjct: 421 cctttgtccaagaagatagccgccggcttcacaactggtgc 461 Score = 153 bits (77), Expect = 7e-34 Identities = 124/140 (88%) Strand = Plus / Plus Query: 108 ggaccacggctccnaggtcgacatctccttcgccggccgcttcacagccagcgccatcgc 167 ||||||||||||| ||| |||||||||||||||||| |||||||| |||||||||||||| Sbjct: 69 ggaccacggctccaagggcgacatctccttcgccggacgcttcacggccagcgccatcgc 128 Query: 168 cgcctgcttcgccgagatcaccacaatccccctcgacacggccaaggtcaggctgcagct 227 || |||||||| ||||| || ||||| ||||||||||||||||||||||| ||||| Sbjct: 129 agcatgcttcgcagagatatgtaccatcccgctcgacacggccaaggtcaggctccagct 188 Query: 228 gcagaagaaggccgtcgccg 247 ||||||||| | |||||||| Sbjct: 189 gcagaagaacgtcgtcgccg 208
>gb|AY644461.1| Saccharum officinarum mitochondrial uncoupling protein 2 mRNA, complete cds; nuclear gene for mitochondrial product Length = 1468 Score = 196 bits (99), Expect = 5e-47 Identities = 190/221 (85%) Strand = Plus / Plus Query: 262 cccaagtaccgcggtctgctcggcactgccgccaccatcgccnaggaggaaggcgccgcc 321 |||||||||||||| |||||||| || |||||||||||||| ||||||||| ||||| Sbjct: 315 cccaagtaccgcggcctgctcggaaccgccgccaccatcgctagggaggaaggggccgca 374 Query: 322 gcgctctggaagggcatcgtccctggcctccaccgccngtgcatctacgggggtctccgc 381 ||||| ||||||||||||||||| |||||||| || | |||||| ||||| || |||||| Sbjct: 375 gcgctatggaagggcatcgtcccgggcctccatcggcagtgcatttacggcggcctccgc 434 Query: 382 attggtctctatgaacccgtcaaagccttctatgttggtgagaaccatgttggggatgta 441 ||||| ||||| || || |||||| ||||||| || || | |||||||||| ||||| Sbjct: 435 attggcctctacgagcctgtcaaatccttctacgtcggcaaagaccatgttggagatgtc 494 Query: 442 cctttgtccaagaagatagccgctggcttcaccactggtgc 482 ||||||||||||||||||||||| |||||||| |||||||| Sbjct: 495 cctttgtccaagaagatagccgccggcttcacaactggtgc 535 Score = 168 bits (85), Expect = 1e-38 Identities = 126/140 (90%) Strand = Plus / Plus Query: 108 ggaccacggctccnaggtcgacatctccttcgccggccgcttcacagccagcgccatcgc 167 ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 146 ggaccacggctccaaggtcgacatctccttcgccggccgcttcaccgccagcgccatcgc 205 Query: 168 cgcctgcttcgccgagatcaccacaatccccctcgacacggccaaggtcaggctgcagct 227 || |||||||| ||||| ||| ||||| |||||||| |||||||||||||| ||||| Sbjct: 206 agcatgcttcgcagagatatgcaccatcccgctcgacaccgccaaggtcaggctccagct 265 Query: 228 gcagaagaaggccgtcgccg 247 ||||||||| | |||||||| Sbjct: 266 gcagaagaacgtcgtcgccg 285
>dbj|AK104090.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B06, full insert sequence Length = 1179 Score = 188 bits (95), Expect = 1e-44 Identities = 189/221 (85%) Strand = Plus / Plus Query: 262 cccaagtaccgcggtctgctcggcactgccgccaccatcgccnaggaggaaggcgccgcc 321 |||||||||||||| || |||||||| |||||||||||||| ||||||||||||||| Sbjct: 221 cccaagtaccgcggcctcctcggcaccgccgccaccatcgcgcgcgaggaaggcgccgcc 280 Query: 322 gcgctctggaagggcatcgtccctggcctccaccgccngtgcatctacgggggtctccgc 381 || |||||||||||||||||||| || |||||||||| |||||||||||| || |||||| Sbjct: 281 gctctctggaagggcatcgtcccgggactccaccgccagtgcatctacggcggcctccgc 340 Query: 382 attggtctctatgaacccgtcaaagccttctatgttggtgagaaccatgttggggatgta 441 || || ||||| || ||||| ||| ||||||| ||||| | ||||||| |||||||| Sbjct: 341 atcggcctctacgagcccgtgaaatccttctacgttggcaaagaccatgtcggggatgtg 400 Query: 442 cctttgtccaagaagatagccgctggcttcaccactggtgc 482 ||| | |||||||||| || || ||||||||||||||||| Sbjct: 401 cctctcaccaagaagatcgctgccggcttcaccactggtgc 441 Score = 101 bits (51), Expect = 2e-18 Identities = 96/111 (86%) Strand = Plus / Plus Query: 126 cgacatctccttcgccggccgcttcacagccagcgccatcgccgcctgcttcgccgagat 185 |||||||||||||||| |||||||||| || ||||||||||| || |||||||| ||| | Sbjct: 91 cgacatctccttcgccagccgcttcaccgcaagcgccatcgctgcatgcttcgctgaggt 150 Query: 186 caccacaatccccctcgacacggccaaggtcaggctgcagctgcagaagaa 236 ||| |||||||| || ||||||||||| ||||| |||||||||||||| Sbjct: 151 gtgcacgatccccctggatacggccaaggtgaggcttcagctgcagaagaa 201
>dbj|AK061318.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D12, full insert sequence Length = 1263 Score = 188 bits (95), Expect = 1e-44 Identities = 189/221 (85%) Strand = Plus / Plus Query: 262 cccaagtaccgcggtctgctcggcactgccgccaccatcgccnaggaggaaggcgccgcc 321 |||||||||||||| || |||||||| |||||||||||||| ||||||||||||||| Sbjct: 223 cccaagtaccgcggcctcctcggcaccgccgccaccatcgcgcgcgaggaaggcgccgcc 282 Query: 322 gcgctctggaagggcatcgtccctggcctccaccgccngtgcatctacgggggtctccgc 381 || |||||||||||||||||||| || |||||||||| |||||||||||| || |||||| Sbjct: 283 gctctctggaagggcatcgtcccgggactccaccgccagtgcatctacggcggcctccgc 342 Query: 382 attggtctctatgaacccgtcaaagccttctatgttggtgagaaccatgttggggatgta 441 || || ||||| || ||||| ||| ||||||| ||||| | ||||||| |||||||| Sbjct: 343 atcggcctctacgagcccgtgaaatccttctacgttggcaaagaccatgtcggggatgtg 402 Query: 442 cctttgtccaagaagatagccgctggcttcaccactggtgc 482 ||| | |||||||||| || || ||||||||||||||||| Sbjct: 403 cctctcaccaagaagatcgctgccggcttcaccactggtgc 443 Score = 109 bits (55), Expect = 9e-21 Identities = 97/111 (87%) Strand = Plus / Plus Query: 126 cgacatctccttcgccggccgcttcacagccagcgccatcgccgcctgcttcgccgagat 185 ||||||||||||||||||||||||||| || ||||||||||| || |||||||| ||| | Sbjct: 93 cgacatctccttcgccggccgcttcaccgcaagcgccatcgctgcatgcttcgctgaggt 152 Query: 186 caccacaatccccctcgacacggccaaggtcaggctgcagctgcagaagaa 236 ||| |||||||| || ||||||||||| ||||| |||||||||||||| Sbjct: 153 gtgcacgatccccctggatacggccaaggtgaggcttcagctgcagaagaa 203
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 149 bits (75), Expect = 1e-32 Identities = 124/141 (87%) Strand = Plus / Plus Query: 262 cccaagtaccgcggtctgctcggcactgccgccaccatcgccnaggaggaaggcgccgcc 321 |||||||||||||| || |||||||| |||||||||||||| ||||||||||||||| Sbjct: 57578 cccaagtaccgcggcctcctcggcaccgccgccaccatcgcgcgcgaggaaggcgccgcc 57637 Query: 322 gcgctctggaagggcatcgtccctggcctccaccgccngtgcatctacgggggtctccgc 381 || |||||||||||||||||||| || |||||||||| |||||||||||| || |||||| Sbjct: 57638 gctctctggaagggcatcgtcccgggactccaccgccagtgcatctacggcggcctccgc 57697 Query: 382 attggtctctatgaacccgtc 402 || || ||||| || |||||| Sbjct: 57698 atcggcctctacgagcccgtc 57718 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 126 cgacatctccttcgccggccgcttcacagccagcgccatcgccgcctgcttcgc 179 ||||||||||||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 57326 cgacatctccttcgccggccgcttcaccgcaagcgccatcgctgcatgcttcgc 57379 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 193 atccccctcgacacggccaaggtcaggctgcagctgcagaagaa 236 |||||||| || ||||||||||| ||||| |||||||||||||| Sbjct: 57515 atccccctggatacggccaaggtgaggcttcagctgcagaagaa 57558 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 425 accatgttggggatgtacctttgtccaagaagatagccgctggcttcaccactggtgctc 484 ||||||| |||||||| ||| | |||||||||| || || ||||||||||||||| ||| Sbjct: 57829 accatgtcggggatgtgcctctcaccaagaagatcgctgccggcttcaccactggtactc 57888 Query: 485 t 485 | Sbjct: 57889 t 57889
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 149 bits (75), Expect = 1e-32 Identities = 124/141 (87%) Strand = Plus / Plus Query: 262 cccaagtaccgcggtctgctcggcactgccgccaccatcgccnaggaggaaggcgccgcc 321 |||||||||||||| || |||||||| |||||||||||||| ||||||||||||||| Sbjct: 28330840 cccaagtaccgcggcctcctcggcaccgccgccaccatcgcgcgcgaggaaggcgccgcc 28330899 Query: 322 gcgctctggaagggcatcgtccctggcctccaccgccngtgcatctacgggggtctccgc 381 || |||||||||||||||||||| || |||||||||| |||||||||||| || |||||| Sbjct: 28330900 gctctctggaagggcatcgtcccgggactccaccgccagtgcatctacggcggcctccgc 28330959 Query: 382 attggtctctatgaacccgtc 402 || || ||||| || |||||| Sbjct: 28330960 atcggcctctacgagcccgtc 28330980 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 126 cgacatctccttcgccggccgcttcacagccagcgccatcgccgcctgcttcgc 179 ||||||||||||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 28330588 cgacatctccttcgccggccgcttcaccgcaagcgccatcgctgcatgcttcgc 28330641 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 193 atccccctcgacacggccaaggtcaggctgcagctgcagaagaa 236 |||||||| || ||||||||||| ||||| |||||||||||||| Sbjct: 28330777 atccccctggatacggccaaggtgaggcttcagctgcagaagaa 28330820 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 425 accatgttggggatgtacctttgtccaagaagatagccgctggcttcaccactggtgctc 484 ||||||| |||||||| ||| | |||||||||| || || ||||||||||||||| ||| Sbjct: 28331091 accatgtcggggatgtgcctctcaccaagaagatcgctgccggcttcaccactggtactc 28331150 Query: 485 t 485 | Sbjct: 28331151 t 28331151
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 149 bits (75), Expect = 1e-32 Identities = 124/141 (87%) Strand = Plus / Plus Query: 262 cccaagtaccgcggtctgctcggcactgccgccaccatcgccnaggaggaaggcgccgcc 321 |||||||||||||| || |||||||| |||||||||||||| ||||||||||||||| Sbjct: 28313289 cccaagtaccgcggcctcctcggcaccgccgccaccatcgcgcgcgaggaaggcgccgcc 28313348 Query: 322 gcgctctggaagggcatcgtccctggcctccaccgccngtgcatctacgggggtctccgc 381 || |||||||||||||||||||| || |||||||||| |||||||||||| || |||||| Sbjct: 28313349 gctctctggaagggcatcgtcccgggactccaccgccagtgcatctacggcggcctccgc 28313408 Query: 382 attggtctctatgaacccgtc 402 || || ||||| || |||||| Sbjct: 28313409 atcggcctctacgagcccgtc 28313429 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 126 cgacatctccttcgccggccgcttcacagccagcgccatcgccgcctgcttcgc 179 ||||||||||||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 28313037 cgacatctccttcgccggccgcttcaccgcaagcgccatcgctgcatgcttcgc 28313090 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 193 atccccctcgacacggccaaggtcaggctgcagctgcagaagaa 236 |||||||| || ||||||||||| ||||| |||||||||||||| Sbjct: 28313226 atccccctggatacggccaaggtgaggcttcagctgcagaagaa 28313269 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 425 accatgttggggatgtacctttgtccaagaagatagccgctggcttcaccactggtgctc 484 ||||||| |||||||| ||| | |||||||||| || || ||||||||||||||| ||| Sbjct: 28313540 accatgtcggggatgtgcctctcaccaagaagatcgctgccggcttcaccactggtactc 28313599 Query: 485 t 485 | Sbjct: 28313600 t 28313600
>dbj|AB049998.1| Oryza sativa (japonica cultivar-group) OsUCP2 gene for uncoupling protein, complete cds Length = 3939 Score = 149 bits (75), Expect = 1e-32 Identities = 124/141 (87%) Strand = Plus / Plus Query: 262 cccaagtaccgcggtctgctcggcactgccgccaccatcgccnaggaggaaggcgccgcc 321 |||||||||||||| || |||||||| |||||||||||||| ||||||||||||||| Sbjct: 608 cccaagtaccgcggcctcctcggcaccgccgccaccatcgcgcgcgaggaaggcgccgcc 667 Query: 322 gcgctctggaagggcatcgtccctggcctccaccgccngtgcatctacgggggtctccgc 381 || |||||||||||||||||||| || |||||||||| |||||||||||| || |||||| Sbjct: 668 gctctctggaagggcatcgtcccgggactccaccgccagtgcatctacggcggcctccgc 727 Query: 382 attggtctctatgaacccgtc 402 || || ||||| || |||||| Sbjct: 728 atcggcctctacgagcccgtc 748 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 126 cgacatctccttcgccggccgcttcacagccagcgccatcgccgcctgcttcgc 179 ||||||||||||||||||||||||||| || ||||||||||| || |||||||| Sbjct: 356 cgacatctccttcgccggccgcttcaccgcaagcgccatcgctgcatgcttcgc 409 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 193 atccccctcgacacggccaaggtcaggctgcagctgcagaagaa 236 |||||||| || ||||||||||| ||||| |||||||||||||| Sbjct: 545 atccccctggatacggccaaggtgaggcttcagctgcagaagaa 588 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 425 accatgttggggatgtacctttgtccaagaagatagccgctggcttcaccactggtgctc 484 ||||||| |||||||| ||| | |||||||||| || || ||||||||||||||| ||| Sbjct: 859 accatgtcggggatgtgcctctcaccaagaagatcgctgccggcttcaccactggtactc 918 Query: 485 t 485 | Sbjct: 919 t 919
>dbj|AB042429.1| Triticum aestivum WhUCP1b mRNA for uncoupling protein, complete cds Length = 971 Score = 48.1 bits (24), Expect = 0.028 Identities = 53/63 (84%) Strand = Plus / Plus Query: 306 ggaggaaggcgccgccgcgctctggaagggcatcgtccctggcctccaccgccngtgcat 365 ||||||||||| | ||| || |||||||||||| |||||||| | ||||||| |||| | Sbjct: 246 ggaggaaggcgtcagcgcactttggaagggcatcatccctggctttcaccgccagtgcct 305 Query: 366 cta 368 ||| Sbjct: 306 cta 308 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 cagcgccatcgccgcctgcttcgc 179 ||||||||||||| |||||||||| Sbjct: 105 cagcgccatcgcctcctgcttcgc 128
>dbj|AB042428.1| Triticum aestivum WhUCP1a mRNA for uncoupling protein, complete cds Length = 974 Score = 48.1 bits (24), Expect = 0.028 Identities = 53/63 (84%) Strand = Plus / Plus Query: 306 ggaggaaggcgccgccgcgctctggaagggcatcgtccctggcctccaccgccngtgcat 365 ||||||||||| | |||| || |||||||||||| |||||||| | || |||| |||| | Sbjct: 249 ggaggaaggcgtcaccgcactttggaagggcatcatccctggctttcatcgccagtgcct 308 Query: 366 cta 368 ||| Sbjct: 309 cta 311 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 cagcgccatcgccgcctgcttcgc 179 ||||||||||||| |||||||||| Sbjct: 108 cagcgccatcgcctcctgcttcgc 131
>gb|AC023723.4| Drosophila melanogaster X BAC RP98-48E6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179363 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 196 cccctcgacacggccaaggtcaggctgcag 225 ||||||||||||| |||||||| ||||||| Sbjct: 30040 cccctcgacacggtcaaggtcaagctgcag 30069
>gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163710 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 196 cccctcgacacggccaaggtcaggctgcag 225 ||||||||||||| |||||||| ||||||| Sbjct: 128087 cccctcgacacggtcaaggtcaagctgcag 128116
>ref|NM_132411.2| Drosophila melanogaster CG1628-RB (CG1628), mRNA Length = 2032 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 196 cccctcgacacggccaaggtcaggctgcag 225 ||||||||||||| |||||||| ||||||| Sbjct: 717 cccctcgacacggtcaaggtcaagctgcag 746
>gb|AY061222.1| Drosophila melanogaster LD16544 full length cDNA Length = 1505 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 196 cccctcgacacggccaaggtcaggctgcag 225 ||||||||||||| |||||||| ||||||| Sbjct: 175 cccctcgacacggtcaaggtcaagctgcag 204
>gb|BT021475.1| Drosophila melanogaster AT02876 full insert cDNA Length = 1759 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 196 cccctcgacacggccaaggtcaggctgcag 225 ||||||||||||| |||||||| ||||||| Sbjct: 718 cccctcgacacggtcaaggtcaagctgcag 747
>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete sequence Length = 285729 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 196 cccctcgacacggccaaggtcaggctgcag 225 ||||||||||||| |||||||| ||||||| Sbjct: 114659 cccctcgacacggtcaaggtcaagctgcag 114630
>dbj|AB088762.1| Helicodiceros muscivorus HmUCPa mRNA for mitochondrial uncoupling protein, complete cds Length = 1209 Score = 44.1 bits (22), Expect = 0.43 Identities = 37/42 (88%) Strand = Plus / Plus Query: 382 attggtctctatgaacccgtcaaagccttctatgttggtgag 423 ||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 299 attgggctttatgaaccagtcaagtccttctatgttggtgag 340
>gb|AY644460.1| Saccharum officinarum mitochondrial uncoupling protein 1 mRNA, complete cds; nuclear gene for mitochondrial product Length = 1240 Score = 42.1 bits (21), Expect = 1.7 Identities = 70/87 (80%) Strand = Plus / Plus Query: 297 catcgccnaggaggaaggcgccgccgcgctctggaagggcatcgtccctggcctccaccg 356 ||||||| ||||||||| | || |||||||||||||| || | ||||| || ||||| Sbjct: 265 catcgccagggaggaaggggttgctgcgctctggaagggtgtcattcctggtcttcaccg 324 Query: 357 ccngtgcatctacgggggtctccgcat 383 || || | ||||||| || |||||||| Sbjct: 325 ccagttcctctacggtggcctccgcat 351 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 cagcgccatcgccgcctgcttcgc 179 ||||||| |||||||||||||||| Sbjct: 115 cagcgccttcgccgcctgcttcgc 138
>gb|AE004753.1| Pseudomonas aeruginosa PAO1, section 314 of 529 of the complete genome Length = 16268 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 gccagcgccatcgccgcctgc 174 ||||||||||||||||||||| Sbjct: 10429 gccagcgccatcgccgcctgc 10449
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 atcgccgcctgcttcgccgag 183 ||||||||||||||||||||| Sbjct: 1384786 atcgccgcctgcttcgccgag 1384806
>dbj|AP000776.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-748H22, complete sequence Length = 191270 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 tggtgagaaccatgttgggga 437 ||||||||||||||||||||| Sbjct: 147839 tggtgagaaccatgttgggga 147819
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ggtggtgccggtgctgggcg 70 |||||||||||||||||||| Sbjct: 3443658 ggtggtgccggtgctgggcg 3443639
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 tggtgctcttgcaattgctg 496 |||||||||||||||||||| Sbjct: 3006200 tggtgctcttgcaattgctg 3006219
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gcgccgccgcgctctggaag 333 |||||||||||||||||||| Sbjct: 5393133 gcgccgccgcgctctggaag 5393152
>gb|AY233003.1| Antechinus flavipes uncoupling protein 2 mRNA, complete cds; nuclear gene for mitochondrial product Length = 1576 Score = 40.1 bits (20), Expect = 6.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 194 tccccctcgacacggccaaggtcaggctgcag 225 ||||||| ||||| ||||| |||||||||||| Sbjct: 488 tccccctggacacagccaaagtcaggctgcag 519
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 tcgccgcctgcttcgccgag 183 |||||||||||||||||||| Sbjct: 77338 tcgccgcctgcttcgccgag 77357
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cgcggtggtgccggtgctgg 67 |||||||||||||||||||| Sbjct: 3577388 cgcggtggtgccggtgctgg 3577369
>ref|XM_883491.1| Leishmania major strain Friedlin hypothetical protein (L2969.06) partial mRNA Length = 9039 Score = 40.1 bits (20), Expect = 6.8 Identities = 28/31 (90%) Strand = Plus / Plus Query: 114 cggctccnaggtcgacatctccttcgccggc 144 |||| || ||||||||||| ||||||||||| Sbjct: 4998 cggcaccaaggtcgacatcaccttcgccggc 5028
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end Length = 225394 Score = 40.1 bits (20), Expect = 6.8 Identities = 28/31 (90%) Strand = Plus / Minus Query: 114 cggctccnaggtcgacatctccttcgccggc 144 |||| || ||||||||||| ||||||||||| Sbjct: 195114 cggcaccaaggtcgacatcaccttcgccggc 195084
>gb|AC034108.26| Mus musculus strain 129S6/SvEvTac clone rp22-70m05 map 1, complete sequence Length = 175231 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gcacttgtgacagaagagag 30 |||||||||||||||||||| Sbjct: 34226 gcacttgtgacagaagagag 34245
>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence Length = 452156 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 cggtctgctcggcactgccg 292 |||||||||||||||||||| Sbjct: 254402 cggtctgctcggcactgccg 254421
>ref|NM_001033547.1| Mus musculus RIKEN cDNA 4922505E12 gene (4922505E12Rik), mRNA Length = 2055 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 caggctgcagctgcagaaga 235 |||||||||||||||||||| Sbjct: 1238 caggctgcagctgcagaaga 1257
>gb|AC123567.8| Homo sapiens 12 BAC RP11-74K11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114800 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ggaggaaggcgccgccgcgc 325 |||||||||||||||||||| Sbjct: 20759 ggaggaaggcgccgccgcgc 20778
>gb|AE012308.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 216 of 460 of the complete genome Length = 11019 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 tcgcggtggtgccggtgctg 66 |||||||||||||||||||| Sbjct: 1410 tcgcggtggtgccggtgctg 1429
>gb|AE012298.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 206 of 460 of the complete genome Length = 12693 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 catcgccgcctgcttcgccg 181 |||||||||||||||||||| Sbjct: 9104 catcgccgcctgcttcgccg 9123
>gb|BC029934.1| Homo sapiens, clone IMAGE:5165874, mRNA Length = 965 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ggaggaaggcgccgccgcgc 325 |||||||||||||||||||| Sbjct: 38 ggaggaaggcgccgccgcgc 57
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 gtggtgccggtgctgggcgg 71 |||||||||||||||||||| Sbjct: 4247456 gtggtgccggtgctgggcgg 4247475
>dbj|AK132754.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4922505E12 product:Hypothetical beta tubulin containing protein (Fragment), full insert sequence Length = 2055 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 caggctgcagctgcagaaga 235 |||||||||||||||||||| Sbjct: 1238 caggctgcagctgcagaaga 1257
>gb|BC098032.1| Rattus norvegicus similar to hypothetical protein FLJ35728, mRNA (cDNA clone IMAGE:7456462), partial cds Length = 2057 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 caggctgcagctgcagaaga 235 |||||||||||||||||||| Sbjct: 1213 caggctgcagctgcagaaga 1232
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 catcgccgcctgcttcgccg 181 |||||||||||||||||||| Sbjct: 2700518 catcgccgcctgcttcgccg 2700499 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tcgcggtggtgccggtgctg 66 |||||||||||||||||||| Sbjct: 2591499 tcgcggtggtgccggtgctg 2591480
>dbj|AK077097.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933404O04 product:hypothetical Beta tubulin containing protein, full insert sequence Length = 1361 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 caggctgcagctgcagaaga 235 |||||||||||||||||||| Sbjct: 546 caggctgcagctgcagaaga 565
>ref|NM_005761.1| Homo sapiens plexin C1 (PLXNC1), mRNA Length = 5121 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ggaggaaggcgccgccgcgc 325 |||||||||||||||||||| Sbjct: 263 ggaggaaggcgccgccgcgc 282
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 cgccatcgccgcctgcttcg 178 |||||||||||||||||||| Sbjct: 8963974 cgccatcgccgcctgcttcg 8963955
>ref|XM_223013.2| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ35728 (LOC289334), mRNA Length = 1875 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 caggctgcagctgcagaaga 235 |||||||||||||||||||| Sbjct: 1200 caggctgcagctgcagaaga 1219
>ref|XM_343200.2| PREDICTED: Rattus norvegicus plexin C1 (predicted) (Plxnc1_predicted), mRNA Length = 4815 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ggaggaaggcgccgccgcgc 325 |||||||||||||||||||| Sbjct: 14 ggaggaaggcgccgccgcgc 33
>dbj|BS000243.1| Pan troglodytes chromosome 22 clone:CH251-388O03, map 22, complete sequences Length = 182350 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ggccaaggtcaggctgcagc 226 |||||||||||||||||||| Sbjct: 29828 ggccaaggtcaggctgcagc 29809
>dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, map 22, complete sequences Length = 224098 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ggccaaggtcaggctgcagc 226 |||||||||||||||||||| Sbjct: 170963 ggccaaggtcaggctgcagc 170944
>emb|X01422.1|GGALBG3 Chicken ovalbumin gene 3' terminus (non-coding strand) Length = 1829 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gctgcagctgcagaagaagg 238 |||||||||||||||||||| Sbjct: 736 gctgcagctgcagaagaagg 755
>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ggccaaggtcaggctgcagc 226 |||||||||||||||||||| Sbjct: 333647 ggccaaggtcaggctgcagc 333628
>emb|AJ012479.1|AEU012479 Alcaligenes eutrophus plasmid pHG1 nrdD and nrdG genes Length = 3300 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 cggtctgctcggcactgccg 292 |||||||||||||||||||| Sbjct: 1369 cggtctgctcggcactgccg 1350
>gb|AF030339.1|AF030339 Homo sapiens receptor for viral semaphorin protein (VESPR) mRNA, complete cds Length = 5121 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 ggaggaaggcgccgccgcgc 325 |||||||||||||||||||| Sbjct: 263 ggaggaaggcgccgccgcgc 282
>gb|AC159826.1| Gallus gallus BAC clone CH261-57J20 from chromosome unknown, complete sequence Length = 207137 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gctgcagctgcagaagaagg 238 |||||||||||||||||||| Sbjct: 196810 gctgcagctgcagaagaagg 196829
>gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromosome unknown, complete sequence Length = 205302 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gctgcagctgcagaagaagg 238 |||||||||||||||||||| Sbjct: 73573 gctgcagctgcagaagaagg 73592
>gb|AC151579.2| Mus musculus BAC clone RP23-191P7 from 1, complete sequence Length = 204175 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 caggctgcagctgcagaaga 235 |||||||||||||||||||| Sbjct: 143837 caggctgcagctgcagaaga 143818
>gb|AC034109.24| Mus musculus strain C57BL/6J chromosome 1 clone rp23-88k7, complete sequence Length = 227773 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gcacttgtgacagaagagag 30 |||||||||||||||||||| Sbjct: 193705 gcacttgtgacagaagagag 193686
>gb|AC024069.29| Mus musculus BAC Clone 402k12 RPCI-23, complete sequence Length = 242808 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gcacttgtgacagaagagag 30 |||||||||||||||||||| Sbjct: 105699 gcacttgtgacagaagagag 105718
>gb|AC024915.24| Mus musculus C57CL/6J RPCI-23, complete sequence Length = 225646 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gcacttgtgacagaagagag 30 |||||||||||||||||||| Sbjct: 105698 gcacttgtgacagaagagag 105717
>dbj|AP000471.2| Homo sapiens genomic DNA, chromosome 21q22.3, clone:B2308H15 Length = 75008 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ggccaaggtcaggctgcagc 226 |||||||||||||||||||| Sbjct: 48051 ggccaaggtcaggctgcagc 48032 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,437,207 Number of Sequences: 3902068 Number of extensions: 3437207 Number of successful extensions: 74825 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73875 Number of HSP's gapped (non-prelim): 943 length of query: 501 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 479 effective length of database: 17,147,199,772 effective search space: 8213508690788 effective search space used: 8213508690788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)