>TTC15_HUMAN (Q8WVT3) Tetratricopeptide repeat protein 15 (TPR repeat protein|
           15)
          Length = 735

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -1

Query: 123 ICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSNSNPSQ 4
           +CT  S RA      GF P    SPSFG     S   P Q
Sbjct: 159 VCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQ 198

>GLI4_XENLA (Q91661) Zinc finger protein GLI4 (Neural-specific DNA-binding|
           protein xGLI4) (xGLI-4)
          Length = 1361

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -1

Query: 126 TICTSVSLRASTRVSSGFAPLRHSSPSFGSRQ--ACSNSNPS 7
           ++  ++S + S   S G  PL H SP+F SRQ  A +++NP+
Sbjct: 172 SLSAALSQQRSLSSSFGHTPLLHPSPTFASRQQGALTSANPA 213

>MED4_MOUSE (Q9CQA5) Mediator complex subunit 4 (Mediator of RNA polymerase II|
           transcription subunit 4)
          Length = 270

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -3

Query: 196 GNFGGNQLLDGSIS--LSPLYPSQTNDLHVSIASSLHQSFLWLRP 68
           G+  G+ L  G +   L+P YP Q+ND+ V++    H S   L P
Sbjct: 200 GHLPGDALAAGRLPDVLAPQYPWQSNDMSVNMLPPNHSSDFLLEP 244

>L_VSVJH (P13615) Large structural protein (L protein) (Transcriptase)|
            (Replicase) [Includes: RNA-directed RNA polymerase (EC
            2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
            2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2109

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 3/107 (2%)
 Frame = -2

Query: 344  HPIPWHGSPKQPSHPTYLKFENRSRTLRPQCL*SLALPDRTRNGLQLS*GKLRREPAT-- 171
            HP+  HGSP +  +P  L   +    +   C   +      R  L    G    E  +  
Sbjct: 1105 HPLEMHGSPSKKENPCQLCNSSGLTYISVHCPKGITDVFNRRGPLPAYLGSNTSESTSIL 1164

Query: 170  -RWFD*SFAPIPKSDERFARQYRFEPPPEFPLASPRSGIVHHLSGPD 33
              W   S  PI K   R      +  PPE PL++     +  L+G D
Sbjct: 1165 QPWEKESKIPIIKRATRLRDAISWFIPPESPLSTCILNNIRALTGED 1211

>BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (Brefeldin|
           A-sensitivity protein 1)
          Length = 700

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 20  LEHACRDPKDGELCLSGAKPEETLVEARSDTDVQIV 127
           +E  C D  + +LC   A+ +ETL+  RSD+ ++++
Sbjct: 80  IETFCTDANEKQLCREIAQGDETLIVQRSDSFMKLL 115


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,847,644
Number of Sequences: 219361
Number of extensions: 1587551
Number of successful extensions: 4052
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4050
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)