>ARGC_SULAC (Q4JAQ3) N-acetyl-gamma-glutamyl-phosphate/N-acetyl-gamma-|
           aminoadipyl-phosphate reductase (EC 1.2.1.38) (EC
           1.2.1.-) (AGPR) (N-acetyl-glutamate
           semialdehyde/N-acetyl-aminoadipate semialdehyde
           dehydrogenase) (NAGSA dehydrogenase)
          Length = 350

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
 Frame = -1

Query: 394 LSDHSEITDVTAGRSHAHAP--DGSAHGDAVAAEQDASAPVQC--HRGSASVNTEMNTCC 227
           L ++  I+DV  G S   A   +GS H +     Q+A  P +   HR +A V  E+    
Sbjct: 168 LDNYRLISDVKVGSSEGGAKPSEGSHHPE----RQNAIRPYEAEGHRHAAEVEQELQYI- 222

Query: 226 ASKAHAKASNTALRSCRAPVAPMYVSMVSSIDGALAGLVLWLVRSGAAAV----SAIRTV 59
            SK   K S             +    VS+I GALA +  WL+      +      I   
Sbjct: 223 -SKKEVKIS-------------LVPHAVSTIRGALASVHGWLISDDLNEIEFWKKIIEFY 268

Query: 58  RGRAFVRL 35
           RGR FVR+
Sbjct: 269 RGRKFVRV 276

>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding|
            protein) (NRE-binding protein) (DBP-5) (Bax antagonist
            selected in saccharomyces 1) (BASS1)
          Length = 2426

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 1    TQPVSSQDKLAANAQKRAREPCEWLTRPPPRS*QATKQGRPRHRRSMTPSRRT 159
            ++ V  +   + +  +R+R P      P  RS   +++ R   RRS TPSRR+
Sbjct: 1940 SRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRS 1992



 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 16   SQDKLAANAQKRAREPCEWLTRPPPRS*QATKQGRPRHRRSMTPSRR 156
            S  + +    +R+R P      P  RS   +++ R   RRS TPSRR
Sbjct: 1952 SPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRR 1998

>SON_MOUSE (Q9QX47) SON protein|
          Length = 2404

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 10   VSSQDKLAANAQKRAREPCEWLTRPPPRS*QATKQGRPRHRRSMTPSRR 156
            V  +   + +  +R+R P      P  RS   +++ R   RRS TPSRR
Sbjct: 1928 VGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRR 1976

>CCW14_YEAST (O13547) Covalently-linked cell wall protein 14 precursor (Inner|
           cell wall protein)
          Length = 238

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = -1

Query: 430 DAGRETSAGPAHLSD-HSEITDVTAGRSHAHAPDGSAHGDAVAAEQDASAPVQCHRGSAS 254
           DA    SA  +  S+ ++ + D ++  S + +    A     A+   AS+  +    SAS
Sbjct: 71  DADAAYSAFKSSCSEQNASLGDSSSSASSSASSSSKASSSTKASSSSASSSTKASSSSAS 130

Query: 253 VNTEMNTCCASKAHAKASNT 194
            +T+ ++  A+ + +KAS+T
Sbjct: 131 SSTKASSSSAAPSSSKASST 150

>AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene AF4)|
          Length = 1217

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +1

Query: 13   SSQDKLAANAQKRAREPCEWLTRPPPRS*QATKQG-----RPRHRR 135
            SS  K +  AQKR R   +  ++ PPRS  +TK        P+HR+
Sbjct: 879  SSSQKPSRPAQKRPRPDEDTCSQEPPRSASSTKSSSTDPPAPKHRK 924

>RUVA_CHLTE (Q8KFR0) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 201

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = +3

Query: 27  ASGKRTKARPRTVRMADTAAAPLLTSHKTRPAKAPSIDDTIETYMGATGALQLLKAVLLA 206
           ASGK T   P+ +++ + A A L+T    +PA   +I   +ET  G +   ++++A L+A
Sbjct: 139 ASGK-TAGAPQALQLNEDALAALMTLGFPKPAAQKAISGILETSPGLS-VEEVVRAALIA 196

>HLDD_RHILO (Q98I52) ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20)|
           (ADP-L-glycero-beta-D-manno-heptose-6-epimerase)
           (ADP-glyceromanno-heptose 6-epimerase) (ADP-hep
           6-epimerase) (AGME)
          Length = 316

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 271 HRGSASVNTEMNTCCASKAHAKASNTALRSCRAPVAPMYVSMVSSIDG 128
           H+G+ S  TE N     + +   S   L +C+AP  P   +  +S+ G
Sbjct: 73  HQGACSTTTEWNGKFMMEVNFAYSKRLLHACQAPRVPFLYASSASVYG 120

>ALU8_HUMAN (P39195) Alu subfamily SX sequence contamination warning entry|
          Length = 591

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 153 SRWCHRSTVPWPALFCGLSGAGRRPCQP 70
           S W +R   P PA FC  S  G  PC P
Sbjct: 534 SSWDYRRAPPRPANFCIFSRDGVSPCWP 561

>POLN_SLDV (Q8QL53) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
           (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1
          Length = 2593

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -1

Query: 433 EDAGRETSAGPAHLSDHSEITDVTAGRSHAHAPDGSAHGDAVAAEQDASAPVQCHRGSAS 254
           E+ GR+ +A P++      I DV          DG ++ D    +   S  + C RG+  
Sbjct: 521 EEEGRQQAANPSY------IADVLGQDDEEEVDDGMSNVDLGEEDGVGSTIIDCQRGTVK 574

Query: 253 VNT 245
           V T
Sbjct: 575 VIT 577

>FOSL_DROME (P21525) Transcription factor kayak (Fos-related antigen) (dFra)|
           (AP-1)
          Length = 722

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 23/69 (33%), Positives = 30/69 (43%)
 Frame = -1

Query: 391 SDHSEITDVTAGRSHAHAPDGSAHGDAVAAEQDASAPVQCHRGSASVNTEMNTCCASKAH 212
           S H++ T   AG    H   GS +G  V    +  A V   RGSASV +         ++
Sbjct: 312 SAHTDSTSYQAG----HIMAGSVNGGGVNNFSNVLAAVSSSRGSASVGS---------SN 358

Query: 211 AKASNTALR 185
           A  SNT  R
Sbjct: 359 ANTSNTPAR 367

>ALU5_HUMAN (P39192) Alu subfamily SC sequence contamination warning entry|
          Length = 585

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 153 SRWCHRSTVPWPALFCGLSGAGRRPCQP 70
           S W +R   P PA FC  S  G  PC P
Sbjct: 431 SSWDYRRAPPRPANFCIFSRDGVSPCWP 458

>ALU2_HUMAN (P39189) Alu subfamily SB sequence contamination warning entry|
          Length = 587

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 153 SRWCHRSTVPWPALFCGLSGAGRRPCQP 70
           S W +R   P PA FC  S  G  PC P
Sbjct: 531 SSWDYRRPPPRPANFCIFSRDGVSPCXP 558

>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac|
          Length = 1120

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
 Frame = -1

Query: 415 TSAGPAHLSDHSEITDVTAGRSHAHAPDGSAHGDAVAAEQDASAPVQCHRGSAS-VNTEM 239
           +SAG A            A  S   A   SA G A  +E +ASA +Q    SAS   T+ 
Sbjct: 171 SSAGTASTKATEASKSAAAAESSKSAAATSA-GAAKTSETNASASLQSAATSASTATTKA 229

Query: 238 NTCCASKAHAKASNTALRSCRAPVAPMYVSMVSSIDGA 125
           +    S   A AS  A +S     +    S  SS   A
Sbjct: 230 SEAATSARDAAASKEAAKSSETNASSSASSAASSATAA 267


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,936,233
Number of Sequences: 219361
Number of extensions: 763665
Number of successful extensions: 3137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3128
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)