ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart09d06 |
|---|---|
| Clone Library Name | barley_pub |
>PP1RA_MOUSE (Q80W00) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) Length = 888 Score = 30.8 bits (68), Expect = 2.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 316 PSPPPWHXRRDARGGHGSPPRRPLAG 239 P+P P+H R RGG+ PP P G Sbjct: 698 PAPGPYHRGRGGRGGNEPPPPPPFRG 723
>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (PNUTS protein) (MHC class I region proline-rich protein CAT53) Length = 872 Score = 30.4 bits (67), Expect = 2.6 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -2 Query: 316 PSPPPWHXRRDARGGHGSPPRRPLAG 239 P P P+H R RGG+ PP P G Sbjct: 698 PGPGPYHRGRGGRGGNEPPPPPPFRG 723
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 30.0 bits (66), Expect = 3.3 Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 5/32 (15%) Frame = -2 Query: 322 WAPSPPPWHX----RRDARGGHGSP-PRRPLA 242 WAP PPPW RR AR G P P RP A Sbjct: 1195 WAPPPPPWAAGPPPRRRARCGCPRPHPHRPRA 1226
>SMN1_BRARE (Q9W6S8) Survival motor neuron protein 1| Length = 281 Score = 29.6 bits (65), Expect = 4.4 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 7/43 (16%) Frame = -2 Query: 337 IGSRSWAPS-------PPPWHXRRDARGGHGSPPRRPLAGWGP 230 +G SW PS PPP + D R G G P P GW P Sbjct: 179 MGPPSWFPSFPPGPPPPPPHFKKMDGRRGEGPGPSFP--GWPP 219
>VNCS_PAVPN (P18547) Noncapsid protein NS-1 (Nonstructural protein NS1)| Length = 660 Score = 29.6 bits (65), Expect = 4.4 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = -1 Query: 104 WPELAGWLVKKGRGRETAIYQGRWDLFP 21 WP + WLVKKG A Y W P Sbjct: 530 WPLICAWLVKKGYQATMASYMHHWGNVP 557
>VNCS_PAVPK (P52502) Noncapsid protein NS-1 (Nonstructural protein NS1)| Length = 662 Score = 29.6 bits (65), Expect = 4.4 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = -1 Query: 104 WPELAGWLVKKGRGRETAIYQGRWDLFP 21 WP + WLVKKG A Y W P Sbjct: 530 WPLICAWLVKKGYQATMASYMHHWGNVP 557
>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) (EB11) Length = 1336 Score = 28.9 bits (63), Expect = 7.5 Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 5/32 (15%) Frame = -2 Query: 322 WAPSPPPWHX----RRDAR-GGHGSPPRRPLA 242 WAP PPPW RR AR G S P RP A Sbjct: 1207 WAPPPPPWAAGPLPRRRARCGCPRSHPHRPRA 1238
>VNCS_PAVHH (P03133) Noncapsid protein NS-1 (Nonstructural protein NS1) (NCVP1)| Length = 672 Score = 28.9 bits (63), Expect = 7.5 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = -1 Query: 104 WPELAGWLVKKGRGRETAIYQGRWDLFP 21 WP + WLVK G A Y +W P Sbjct: 531 WPLICAWLVKNGYQSTMACYCAKWGKVP 558
>VNCS_MUMIV (P03134) Noncapsid protein NS-1 (Nonstructural protein NS1) (NCVP1)| Length = 672 Score = 28.9 bits (63), Expect = 7.5 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = -1 Query: 104 WPELAGWLVKKGRGRETAIYQGRWDLFP 21 WP + WLVK G A Y +W P Sbjct: 531 WPMICAWLVKNGYQSTMASYCAKWGKVP 558
>VNCS_MUMIM (P07300) Noncapsid protein NS-1 (Nonstructural protein NS1) (NCVP1)| Length = 672 Score = 28.9 bits (63), Expect = 7.5 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = -1 Query: 104 WPELAGWLVKKGRGRETAIYQGRWDLFP 21 WP + WLVK G A Y +W P Sbjct: 531 WPMICAWLVKNGYQSTMASYCAKWGKVP 558
>VNCS_PAVL3 (P36311) Noncapsid protein NS-1 (Nonstructural protein NS1)| Length = 668 Score = 28.9 bits (63), Expect = 7.5 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = -1 Query: 104 WPELAGWLVKKGRGRETAIYQGRWDLFP 21 WP + WLVK G A Y +W P Sbjct: 531 WPMICAWLVKNGYQSTMASYCAKWGKVP 558
>CLGN_MOUSE (P52194) Calmegin precursor (MEG 1 antigen) (Calnexin-T) (A2/6)| Length = 611 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 4/27 (14%) Frame = -1 Query: 95 LAGWLVKKGR----GRETAIYQGRWDL 27 LAGW++ K + E AIY GRW++ Sbjct: 71 LAGWVLSKAKKDDMDSEIAIYDGRWEI 97
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -2 Query: 316 PSPPPWHXRRDARGGHGSPPRRP 248 P P P+H R RGG+ PP P Sbjct: 701 PGPGPYHRGRGGRGGNEPPPPPP 723
>PFA3_NEUCR (Q7S7C5) Palmitoyltransferase PFA3 (EC 2.3.1.-) (Protein fatty| acyltransferase 3) Length = 622 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -2 Query: 325 SWAPSPPPWHXRRD--ARGGHGSPPRRPLAGWGPSD 224 SW P+P W RD AR R AGWGP+D Sbjct: 401 SWEPNPK-WIEARDRIAREREEQRQRERQAGWGPAD 435
>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 940 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -2 Query: 316 PSPPPWHXRRDARGGHGSPPRRP 248 P P P+H R RGG+ PP P Sbjct: 698 PGPGPYHRGRGGRGGNEPPPPPP 720
>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) Length = 940 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -2 Query: 316 PSPPPWHXRRDARGGHGSPPRRP 248 P P P+H R RGG+ PP P Sbjct: 698 PGPGPYHRGRGGRGGNEPPPPPP 720
>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (MHC class I region proline-rich protein CAT53) (FB19 protein) (PP1-binding protein of 114 kDa) (p99) Length = 940 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -2 Query: 316 PSPPPWHXRRDARGGHGSPPRRP 248 P P P+H R RGG+ PP P Sbjct: 698 PGPGPYHRGRGGRGGNEPPPPPP 720 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,614,729 Number of Sequences: 219361 Number of extensions: 738767 Number of successful extensions: 2478 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2357 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2474 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
