ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09c08 |
|---|---|
| Clone Library Name | barley_pub |
>YIQ9_YEAST (P40442) Hypothetical protein YIL169C precursor| Length = 995 Score = 34.3 bits (77), Expect = 0.12 Identities = 23/92 (25%), Positives = 42/92 (45%) Frame = +1 Query: 145 TKVTKGGASTALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSNPLSPVS 324 + V++ +ST+ ++ +S D+S+ + S + ++S +++ S+ S VS Sbjct: 177 SSVSQSASSTSDVSSSVSQSSSSASDVSSSVSQSSSSASDVSSSVSQSASSTSDVSSSVS 236 Query: 325 FXXXXXXXXXPSGSVGVSGLARSGSSFPAQVS 420 SGS VS + S SSFP S Sbjct: 237 QSASSTSGVSSSGSQSVSSASGSSSSFPQSTS 268
>FMP1_PSEAE (P17838) Fimbrial protein precursor (Pilin) (Strain P1)| Length = 157 Score = 32.3 bits (72), Expect = 0.47 Identities = 21/54 (38%), Positives = 28/54 (51%) Frame = +1 Query: 142 LTKVTKGGASTALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGS 303 + KVT GG TA S G +V + A + TP G+T T+TL N+ GS Sbjct: 85 VAKVTTGG------TAAASGGCTIVATMKASDVATPLRGKTLTLTL-GNADKGS 131
>PQE1_CAEEL (Q10124) Putative RNA exonuclease pqe-1 (PolyQ enhancer protein 1)| Length = 1647 Score = 32.0 bits (71), Expect = 0.61 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = +3 Query: 42 QHNTTQAQNVAVQASP-GAPPARRLHGGDRRQASAHQGNQGR 164 Q +T QA N+ A+ G PP + + G R Q +AHQ G+ Sbjct: 115 QMSTQQAANLRKNAAAAGTPPKQAMQGASREQGNAHQPTAGQ 156
>HKR1_YEAST (P41809) Hansenula MRAKII killer toxin-resistant protein 1| precursor Length = 1802 Score = 31.2 bits (69), Expect = 1.0 Identities = 22/83 (26%), Positives = 37/83 (44%) Frame = +1 Query: 172 TALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSNPLSPVSFXXXXXXXX 351 T+ +AP++ SAP+ + + +V ++ +ST S+P +P + Sbjct: 617 TSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSVPVAVSSTYTSSPSAPAAI--SSTYTS 674 Query: 352 XPSGSVGVSGLARSGSSFPAQVS 420 PS V VS S S PA +S Sbjct: 675 SPSVPVAVSSTYTSSPSAPAAIS 697 Score = 31.2 bits (69), Expect = 1.0 Identities = 22/83 (26%), Positives = 37/83 (44%) Frame = +1 Query: 172 TALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSNPLSPVSFXXXXXXXX 351 T+ +AP++ SAP+ + + + ++ +ST S+P +PV+ Sbjct: 533 TSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAPVAI--SSTYTS 590 Query: 352 XPSGSVGVSGLARSGSSFPAQVS 420 PS V VS S S PA +S Sbjct: 591 SPSVPVAVSSTYTSSPSAPAAIS 613 Score = 29.3 bits (64), Expect = 3.9 Identities = 20/83 (24%), Positives = 35/83 (42%) Frame = +1 Query: 172 TALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSNPLSPVSFXXXXXXXX 351 T+ +AP++ SAP+ + + + ++ +ST S+P +P + Sbjct: 505 TSSPSAPVAVSSTYTSSPSAPAAISSTYTSSPSAPVAVSSTYTSSPSAPAAI--SSTYTS 562 Query: 352 XPSGSVGVSGLARSGSSFPAQVS 420 PS V VS S S P +S Sbjct: 563 SPSAPVAVSSTYTSSPSAPVAIS 585
>LEU3_METCA (Q606F4) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 360 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -2 Query: 320 TGDSGLLPSVELAESVTVVVCPLHGVVMDGAER 222 TG G+LPS LAES + P+HG D A R Sbjct: 258 TGSIGMLPSASLAESGKGMYEPIHGSAPDIAGR 290
>LEU3_SYNEL (P59029) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 361 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -2 Query: 320 TGDSGLLPSVELAESVTVVVCPLHGVVMDGAERSKTS 210 TG G+LPS L ES + P+HG D A + K + Sbjct: 260 TGSIGMLPSASLGESGPALFEPVHGSAPDIAGQDKAN 296
>CFTR_XENLA (P26363) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1485 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T LSAN DG N L +SF P VG+ G SG S Sbjct: 1208 PSGGQMTVKNLSANYIDGGNTVLENISF------SLSPGQRVGLLGRTGSGKS 1254
>CFTR_PAPAN (Q9TSP5) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T L+A T+G NP L +SF P VG+ G SG S Sbjct: 1206 PSGGQMTVKDLTAKYTEGGNPILENISF------SISPGQRVGLLGRTGSGKS 1252
>CFTR_MACNE (Q9TUQ2) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T L+A T+G NP L +SF P VG+ G SG S Sbjct: 1206 PSGGQMTVKDLTAKYTEGGNPILENISF------SISPGQRVGLLGRTGSGKS 1252
>CFTR_MACMU (Q00553) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T L+A T+G NP L +SF P VG+ G SG S Sbjct: 1206 PSGGQMTVKDLTAKYTEGGNPILENISF------SISPGQRVGLLGRTGSGKS 1252
>CFTR_MACFU (Q7JII7) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T L+A T+G NP L +SF P VG+ G SG S Sbjct: 1206 PSGGQMTVKDLTAKYTEGGNPILENISF------SISPGQRVGLLGRTGSGKS 1252
>CFTR_MACFA (Q7JII8) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 29.6 bits (65), Expect = 3.0 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Frame = +1 Query: 247 PCSGQTTTVTLSANSTDGSNP-LSPVSFXXXXXXXXXPSGSVGVSGLARSGSS 402 P GQ T L+A T+G NP L +SF P VG+ G SG S Sbjct: 1206 PSGGQMTVKDLTAKYTEGGNPILENISF------SISPGQRVGLLGRTGSGKS 1252
>DACT1_HUMAN (Q9NYF0) Dapper homolog 1 (hDPR1) (Heptacellular carcinoma novel| gene 3 protein) Length = 836 Score = 29.3 bits (64), Expect = 3.9 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +3 Query: 18 DFDSQLPTQHNTTQAQNVAVQASPGAPPARRLHGGDRRQA---SAHQGNQGRRLHGALHG 188 DF S+ +Q + +A V Q PG P+ RLH G R ++ ++G L G +G Sbjct: 539 DFKSEGSSQ-SLEEAHLVKAQFIPGQQPSVRLHRGHRNMGVVKNSSLKHRGPALQGLENG 597 Query: 189 APQRRPPT 212 P R T Sbjct: 598 LPTVREKT 605
>LEU33_ARATH (Q9FMT1) 3-isopropylmalate dehydrogenase 3, chloroplast precursor| (EC 1.1.1.85) (Beta-IPM dehydrogenase 3) (IMDH 3) (3-IPM-DH 3) Length = 409 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -2 Query: 320 TGDSGLLPSVELAESVTVVVCPLHGVVMDGAERSKTS 210 TG G+LPS L ES + P+HG D A + K + Sbjct: 302 TGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKAN 338
>LEU31_ARATH (Q9SA14) 3-isopropylmalate dehydrogenase 1, chloroplast precursor| (EC 1.1.1.85) (Beta-IPM dehydrogenase 1) (IMDH 1) (3-IPM-DH 1) Length = 406 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -2 Query: 320 TGDSGLLPSVELAESVTVVVCPLHGVVMDGAERSKTS 210 TG G+LPS L ES + P+HG D A + K + Sbjct: 299 TGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKAN 335
>EDAR_MOUSE (Q9R187) Tumor necrosis factor receptor superfamily member EDAR| precursor (Anhidrotic ectodysplasin receptor 1) (Ectodysplasin-A receptor) (Ectodermal dysplasia receptor) (Downless) Length = 448 Score = 28.9 bits (63), Expect = 5.2 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 223 LSAPSITTPCSGQTTTVTLSANSTDGSNPLSP 318 L AP T C G T+ V+ ++ST G + LSP Sbjct: 139 LLAPPNTKECVGATSGVSAHSSSTSGGSTLSP 170
>HECD1_HUMAN (Q9ULT8) E3 ubiquitin-protein ligase HECTD1 (HECT domain-containing| protein 1) (E3 ligase for inhibin receptor) (EULIR) Length = 2612 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +1 Query: 196 SAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSN 306 +A PL+ S P++TTP G T+TVT+S +S S+ Sbjct: 1587 TATSPLMGAQSFPNLTTP--GTTSTVTMSTSSVTSSS 1621
>US02_EHV1B (P28964) Gene 68 protein| Length = 418 Score = 28.9 bits (63), Expect = 5.2 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +3 Query: 84 SPGAPPARRL--HGGDRRQASAHQGNQGRRLHGALHGAPQRRPPTG 215 +PG P RR GGD R +A ++ R +HG A R P G Sbjct: 232 APGRPLPRRRPSEGGDARPEAALARSRARSVHGRRRDAAPPRGPAG 277
>LEU32_ARATH (P93832) 3-isopropylmalate dehydrogenase 2, chloroplast precursor| (EC 1.1.1.85) (Beta-IPM dehydrogenase 2) (IMDH 2) (3-IPM-DH 2) Length = 405 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 320 TGDSGLLPSVELAESVTVVVCPLHGVVMDGAERSKTS 210 TG G+LPS L++S + P+HG D A + K + Sbjct: 298 TGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKAN 334
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 28.5 bits (62), Expect = 6.7 Identities = 24/80 (30%), Positives = 35/80 (43%) Frame = +1 Query: 169 STALYTAPLSAGRPLVFDLSAPSITTPCSGQTTTVTLSANSTDGSNPLSPVSFXXXXXXX 348 +T+ + PLS+ + + +TP S +T SA+ST PL+ V+ Sbjct: 316 TTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASST----PLTSVNSTTATSAS 371 Query: 349 XXPSGSVGVSGLARSGSSFP 408 P SV S A S SS P Sbjct: 372 STPLTSVN-STSATSASSTP 390
>ANC1_HUMAN (Q9H1A4) Anaphase-promoting complex subunit 1 (APC1) (Cyclosome| subunit 1) (Protein Tsg24) (Mitotic checkpoint regulator) Length = 1944 Score = 28.5 bits (62), Expect = 6.7 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 11/68 (16%) Frame = +1 Query: 151 VTKGGASTALYTAPLSAGRPLVFDLSAPSIT---------TPCSGQTTTVTLS--ANSTD 297 V +G + LYT + G+ + L APS+T TP G +T LS S D Sbjct: 490 VLEGSGNLVLYTGVVRVGKVFIPGLPAPSLTMSNTMPRPSTPLDGVSTPKPLSKLLGSLD 549 Query: 298 GSNPLSPV 321 LSPV Sbjct: 550 EVVLLSPV 557
>COAT_GMDNV (Q90125) Coat protein VP1 (Structural protein VP1) [Contains: Coat| protein VP (Structural protein VP2); Coat protein VP3 (Structural protein VP3); Coat protein VP4 (Structural protein VP4)] Length = 811 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 229 APSITTPCSGQTTTVTLSANSTDGSNPLS 315 +P++ TP TT V +++ STD NP S Sbjct: 334 SPAVETPAKKGTTGVNVNSQSTDPQNPSS 362
>LEU3_BRANA (P29102) 3-isopropylmalate dehydrogenase, chloroplast precursor (EC| 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) Length = 406 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 320 TGDSGLLPSVELAESVTVVVCPLHGVVMDGAERSKTS 210 TG G+LPS L++S + P+HG D A + K + Sbjct: 299 TGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKAN 335
>EMBA_MYCTU (P0A560) Probable arabinosyltransferase A (EC 2.4.2.-)| Length = 1094 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Frame = +1 Query: 184 TAPLSAGRPLVFDLSAPS---ITTPCSGQTTTVTLSANSTD 297 TAPL +G P D+S P T P +G TL A D Sbjct: 59 TAPLVSGAPRALDISIPCSAIATLPANGGLVLSTLPAGGVD 99
>EMBA_MYCBO (P0A561) Probable arabinosyltransferase A (EC 2.4.2.-)| Length = 1094 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Frame = +1 Query: 184 TAPLSAGRPLVFDLSAPS---ITTPCSGQTTTVTLSANSTD 297 TAPL +G P D+S P T P +G TL A D Sbjct: 59 TAPLVSGAPRALDISIPCSAIATLPANGGLVLSTLPAGGVD 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.309 0.124 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,434,644 Number of Sequences: 219361 Number of extensions: 666528 Number of successful extensions: 2102 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2025 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2097 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)
