ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YQJG_ECOLI (P42620) Hypothetical protein yqjG 64 2e-10
2ECM4_YEAST (P36156) Extracellular matrix protein 4 51 2e-06
3YM85_YEAST (Q04806) Hypothetical 42.4 kDa protein in FAA4-HOR7 i... 46 5e-05
4YK67_CAEEL (P34345) Hypothetical protein C29E4.7 in chromosome III 33 0.53
5GSTO1_RAT (Q9Z339) Glutathione transferase omega-1 (EC 2.5.1.18)... 31 2.0
6GSTO1_MOUSE (O09131) Glutathione transferase omega-1 (EC 2.5.1.1... 30 2.7
7IN21_MAIZE (P49248) IN2-1 protein 29 5.9
8GLRX2_SYNY3 (P73492) Probable glutaredoxin ssr2061 29 7.7

>YQJG_ECOLI (P42620) Hypothetical protein yqjG|
          Length = 328

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 42/98 (42%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
 Frame = +1

Query: 142 DEVTDTGAFDRTPSTFRSFVSSDGA------ARFPAVAGRYHLYVSYACPWASRCLAYLK 303
           D  +  G F R+ S FR+++++DGA        F A   RYHLYVS ACPWA R L   K
Sbjct: 15  DTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRK 74

Query: 304 LKGLDHAISFSSGKP-VFERTRESDDHLGWVFPAAAGE 414
           LKGL+  IS S   P + E     DD     FP A G+
Sbjct: 75  LKGLEPFISVSVVNPLMLENGWTFDDS----FPGATGD 108



to top

>ECM4_YEAST (P36156) Extracellular matrix protein 4|
          Length = 370

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 30/59 (50%), Positives = 32/59 (54%)
 Frame = +1

Query: 160 GAFDRTPSTFRSFVSSDGAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFS 336
           GAF R  S+FR  +S       PA  GRY LYVS ACPWA R L    LKGL   I  S
Sbjct: 11  GAFKRQVSSFRETISKQHPIYKPA-KGRYWLYVSLACPWAHRTLITRALKGLTSVIGCS 68



to top

>YM85_YEAST (Q04806) Hypothetical 42.4 kDa protein in FAA4-HOR7 intergenic|
           region
          Length = 366

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 27/57 (47%), Positives = 30/57 (52%)
 Frame = +1

Query: 166 FDRTPSTFRSFVSSDGAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFS 336
           F R  S FR  +S+D     PA  GRY LYV+  CPWA R L    LKGL   I  S
Sbjct: 13  FKRQSSPFREIISADHPIYKPA-KGRYWLYVALPCPWAQRTLITRALKGLAPIIGCS 68



to top

>YK67_CAEEL (P34345) Hypothetical protein C29E4.7 in chromosome III|
          Length = 250

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 211 GAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLD 318
           G A  P   G + +Y    CPWA R + Y+  KG++
Sbjct: 14  GDAEPPLSKGSFRVYNMRFCPWAERAMLYVAAKGIE 49



to top

>GSTO1_RAT (Q9Z339) Glutathione transferase omega-1 (EC 2.5.1.18) (GSTO 1-1)|
           (Glutathione-dependent dehydroascorbate reductase)
          Length = 241

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 226 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAI 327
           P   G+  +Y    CP+A R L  LK KG+ H I
Sbjct: 18  PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEI 51



to top

>GSTO1_MOUSE (O09131) Glutathione transferase omega-1 (EC 2.5.1.18) (GSTO 1-1)|
           (p28)
          Length = 240

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 226 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAI 327
           P   G+  +Y    CP+A R L  LK KG+ H +
Sbjct: 18  PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEV 51



to top

>IN21_MAIZE (P49248) IN2-1 protein|
          Length = 243

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 226 PAVAGRYHLYVSYACPWASRCLAYLKLKGL 315
           P   G   LY+ Y CP+A R      LKGL
Sbjct: 27  PVFDGTTRLYICYFCPFAQRAWVTRNLKGL 56



to top

>GLRX2_SYNY3 (P73492) Probable glutaredoxin ssr2061|
          Length = 88

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 229 AVAGRYHLYVSYACPWASRCLAYLKLKGLD 318
           AV+ +  +Y    CP+  R LA LK KG++
Sbjct: 2   AVSAKIEIYTWSTCPFCMRALALLKRKGVE 31


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,304,558
Number of Sequences: 219361
Number of extensions: 522266
Number of successful extensions: 2274
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2272
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top