ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRS1_ORYSA (P83649) Salt-stress root protein RS1 157 1e-38
2XGPT_NITWN (Q3SQJ9) Xanthine phosphoribosyltransferase (EC 2.4.2... 30 2.8
3MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A 29 8.1
4DNAK_MYCHJ (Q4AAR4) Chaperone protein dnaK (Heat shock protein 7... 29 8.1
5DNAK_MYCH7 (Q4A8U5) Chaperone protein dnaK (Heat shock protein 7... 29 8.1

>SRS1_ORYSA (P83649) Salt-stress root protein RS1|
          Length = 204

 Score =  157 bits (398), Expect = 1e-38
 Identities = 85/130 (65%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
 Frame = +2

Query: 107 MTSVWKTKVLPGLSXXXXXXXXXXXXXEFLKSFNXXXXXXXXXXXXTELEPKVVETIEAS 286
           MTSVWKTKVL GL+             EFLKSFN            TELEPKVVE +E+S
Sbjct: 1   MTSVWKTKVLTGLNKLFDKDGKKAAAAEFLKSFNKEEIGKEIDDKKTELEPKVVEVVESS 60

Query: 287 PPEIKGLIKDKKT-SQIKKNSAAVIKFLDEMAKIGFPGAKLVSDAVVKSGTTPLSPAIVF 463
           PPEIK L+KDKKT S+IKKN  AV KFL+E+AKI FPGAK VSDAV KSGTTPLSPAI F
Sbjct: 61  PPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAF 120

Query: 464 ILDXVAPFVP 493
           IL+ VAPFVP
Sbjct: 121 ILEKVAPFVP 130



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>XGPT_NITWN (Q3SQJ9) Xanthine phosphoribosyltransferase (EC 2.4.2.22)|
           (Xanthine-guanine phosphoribosyltransferase) (XGPRT)
          Length = 168

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 444 RGVVPDLTTASLTSLAPGKPILAISSRNLMTAAEFFLIWDVFLSFIKPLISG 289
           RG++PD   A++ +   GKP++      +      +  WD+ L+F  PL  G
Sbjct: 115 RGMIPDAHFATVYAKPLGKPLVDTFITEVSQDTWIYFPWDLDLAFAPPLRDG 166



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>MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A|
          Length = 329

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 94  EGEEYDERMEDQGSPRAQQVLRQGWQEGRRRR 189
           EG E   R    G    QQ+L+QGWQ+ +R R
Sbjct: 198 EGGELFRRHHVSGEVIRQQLLQQGWQQQQRAR 229



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>DNAK_MYCHJ (Q4AAR4) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 600

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 248 ELEPKVVETIEASPPEIKGLIKDKKTSQIK 337
           +++PK  E +E    E+K L+K++KT ++K
Sbjct: 528 KIDPKQKELLEKQIQELKDLLKEEKTDELK 557



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>DNAK_MYCH7 (Q4A8U5) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 600

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 248 ELEPKVVETIEASPPEIKGLIKDKKTSQIK 337
           +++PK  E +E    E+K L+K++KT ++K
Sbjct: 528 KIDPKQKELLEKQIQELKDLLKEEKTDELK 557


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,969,456
Number of Sequences: 219361
Number of extensions: 870410
Number of successful extensions: 2900
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2899
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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