ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GI1L3_ARATH (Q940G6) Probable gibberellin receptor GID1L3 (EC 3.... 37 0.024
2GI1L1_ARATH (Q9MAA7) Probable gibberellin receptor GID1L1 (EC 3.... 37 0.031
3GID1_ORYSA (Q6L545) Gibberellin receptor GID1 (EC 3.-.-.-) (Gibb... 34 0.20
4SODC_MYCPA (Q9AGW2) Superoxide dismutase [Cu-Zn] precursor (EC 1... 30 3.8
5UNG_PRVIF (P52506) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG) 30 3.8
6ECX1_METTH (O26779) Probable exosome complex exonuclease 1 (EC 3... 29 4.9

>GI1L3_ARATH (Q940G6) Probable gibberellin receptor GID1L3 (EC 3.-.-.-)|
           (GID1-like protein 3)
          Length = 344

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +2

Query: 155 LPLGVRLQLAGLTAAIDAVERSDGTVNRCLYSVIDRLLSKRANPRPDGSGVRSYDFTVDA 334
           +PL   + ++    A + + R DGT NR L   +DR +   ANP    +GV S+D  +D 
Sbjct: 16  VPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPANANP---VNGVFSFDVIIDR 72

Query: 335 SRGIWAR 355
              + +R
Sbjct: 73  QTNLLSR 79



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>GI1L1_ARATH (Q9MAA7) Probable gibberellin receptor GID1L1 (EC 3.-.-.-)|
           (GID1-like protein 1)
          Length = 345

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +2

Query: 155 LPLGVRLQLAGLTAAIDAVERSDGTVNRCLYSVIDRLLSKRANPRPDGSGVRSYDFTVDA 334
           +PL   + ++    A + + R DGT NR L   +DR ++  ANP     GV S+D  +D 
Sbjct: 16  VPLNTWVLISNFKVAYNILRRPDGTFNRHLAEYLDRKVTANANP---VDGVFSFDVLIDR 72

Query: 335 SRGIWAR 355
              + +R
Sbjct: 73  RINLLSR 79



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>GID1_ORYSA (Q6L545) Gibberellin receptor GID1 (EC 3.-.-.-)|
           (Gibberellin-insensitive dwarf protein 1) (Protein
           GIBBERELLIN INSENSITIVE DWARF1)
          Length = 354

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +2

Query: 155 LPLGVRLQLAGLTAAIDAVERSDGTVNRCLYSVIDRLLSKRANPRPDGSGVRSYDFTVDA 334
           +PL   + ++    + + + R+DGT  R L   +DR +   A P     GV S+D  +D 
Sbjct: 16  VPLHTWVLISNFKLSYNILRRADGTFERDLGEYLDRRVPANARPL---EGVSSFDHIIDQ 72

Query: 335 SRGIWAR 355
           S G+  R
Sbjct: 73  SVGLEVR 79



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>SODC_MYCPA (Q9AGW2) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)|
          Length = 227

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 222 SLRSTASMAAVSPASWSRTPSGSGAGIGRCP*PAAASI 109
           S +  +S+   +PA W+ +PS SGAG       AA SI
Sbjct: 22  SPQHASSLPGTTPAVWTGSPSPSGAGAAEAAPAAAPSI 59



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>UNG_PRVIF (P52506) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 315

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -2

Query: 237 RLTVPSLRSTASMAAVSPASWSRTPSGSGAGIGRCP*PAAAS 112
           RL VP+  ++AS AA + A  +  P+G+GAG  +   P AA+
Sbjct: 18  RLVVPAAAASASNAATAAA--AAAPAGAGAGASKPARPPAAA 57



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>ECX1_METTH (O26779) Probable exosome complex exonuclease 1 (EC 3.1.13.-)|
          Length = 240

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 194 AAIDAVERSDGTVNRCLYSVIDRLLSKRANPRPDGSGVRSYDFTVDASR 340
           A I  ++R D  V RC Y++    + +R  P PD   V     T +A R
Sbjct: 62  AQIRKLQRPDRAVIRCRYNMAPFSVEERKRPGPDRRSVEISKITAEALR 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,858,834
Number of Sequences: 219361
Number of extensions: 522088
Number of successful extensions: 1876
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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