ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09b07 |
|---|---|
| Clone Library Name | barley_pub |
>MARCS_MOUSE (P26645) Myristoylated alanine-rich C-kinase substrate (MARCKS)| Length = 308 Score = 29.6 bits (65), Expect = 1.8 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%) Frame = -1 Query: 394 AATAKEGDTHGWEEERPAG-DLKKGGEPQALPAVDKVDPQQ------ERPAGADQDEASA 236 AA EG E+ AG + GGEP+ A + P+Q E P +Q EA+ Sbjct: 190 AAAGGEGAAAPGEQAGGAGAEGAAGGEPREAEAAEPEQPEQPEQPAAEEPQAEEQSEAAG 249 Query: 235 EYDQQRRPVAS 203 E ++ P A+ Sbjct: 250 EKAEEPAPGAT 260
>G3O23_WHEAT (Q3I409) Gibberellin 3-beta-dioxygenase 2-3 (EC 1.14.11.15)| (Gibberellin 3 beta-hydroxylase 2-3) (Gibberellin 3-oxidase 2-3) Length = 369 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Frame = -1 Query: 391 ATAKEGDTHGWE--EERPAGDLK-KGGEPQALPAVDKVDPQQERPAG-ADQD 248 A + +TH W + P D GGEP A+P VD DP G A QD Sbjct: 18 AARRVPETHAWPGLHDHPVVDGSGAGGEPDAVPVVDMRDPFAAEAVGLAAQD 69
>ITM2A_HUMAN (O43736) Integral membrane protein 2A (E25 protein)| Length = 263 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 9/67 (13%) Frame = -1 Query: 391 ATAKEGDTHGWEEERPAGDLKKGGEPQALPAVDKVDPQQER---------PAGADQDEAS 239 +T G+ ++ E PA L+ GGEP LP ++ D +++ P+ +D D A+ Sbjct: 82 STIYRGEMCFFDSEDPANSLR-GGEPNFLPVTEEADIREDDNIAIIDVPVPSFSDSDPAA 140 Query: 238 AEYDQQR 218 +D ++ Sbjct: 141 IIHDFEK 147
>MOK1_SCHPO (Q9USK8) Cell wall alpha-1,3-glucan synthase mok1 (EC 2.4.1.183)| Length = 2410 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = -1 Query: 358 EEERPAGDLKKGGEPQALPAVDKVDPQQERPAGADQDEASAEYDQQR 218 EE AGD GG + ++++P P+ D E+D QR Sbjct: 1711 EESMTAGDSTSGGSDISRYRAERLNPDSHSPSEYSFDSGDYEFDPQR 1757
>EXP1_PLAFA (P04926) Malaria protein EXP-1 precursor (Exported antigen AG 5.1)| Length = 162 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -1 Query: 382 KEGDTHGWEEERPAGDLKKGGEPQALPAVDKVDPQQERPAGADQDEAS 239 K G + + P D + GEP A P V D E+P G D + S Sbjct: 111 KIGSSDPADNANPDADSESNGEPNADPQVTAQDVTPEQPQGDDNNLVS 158
>CRA_PLAFA (P04923) Circumsporozoite protein-related antigen precursor (CRA)| Length = 162 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -1 Query: 382 KEGDTHGWEEERPAGDLKKGGEPQALPAVDKVDPQQERPAGADQDEAS 239 K G + + P D + GEP A P V D E+P G D + S Sbjct: 111 KIGSSDPADNANPDADSESNGEPNADPQVTAQDVTPEQPQGDDNNLVS 158
>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1| light chain LC2] Length = 2774 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = -1 Query: 382 KEGDT-HGWEEERPAGDLKKGGEPQALPAVDKVDPQQERPAGADQD 248 KE D GW E P GG+ + +PA + P+QE D+D Sbjct: 1610 KEQDVVQGWRETSPTRGEPVGGQKEPVPAWEGKSPEQEVRYWRDRD 1655
>BCSA5_ACEXY (Q9WX75) Putative cellulose synthase 3 [Includes: Cellulose| synthase catalytic subunit [UDP-forming] (EC 2.4.1.12); Cyclic di-GMP-binding domain (Cellulose synthase 3 regulatory subunit)] Length = 1518 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = -1 Query: 397 VAATAKEGDTHGWEEERPAGDLKKGGEPQALPAVD 293 +A A D G E P GD G P ALPA+D Sbjct: 761 MAQEAPSPDQSGVTAETPFGDSNTGVVPDALPAID 795
>BCSA4_ACEXY (Q9RBJ2) Putative cellulose synthase 2 [Includes: Cellulose| synthase catalytic subunit [UDP-forming] (EC 2.4.1.12); Cyclic di-GMP-binding domain (Cellulose synthase 2 regulatory subunit)] Length = 1518 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = -1 Query: 397 VAATAKEGDTHGWEEERPAGDLKKGGEPQALPAVD 293 +A A D G E P GD G P ALPA+D Sbjct: 761 MAQEAPSPDQSGVTAETPFGDSNTGVVPDALPAID 795
>HNRPU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP U)| (Scaffold attachment factor A) (SAF-A) (p120) (pp120) Length = 824 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -1 Query: 382 KEGDTHGWEEERPAGDLKKGGEPQAL-PAVDKVDPQQERPAGAD 254 +EG+ +EE AGD GE Q PA + PQQ+R A + Sbjct: 139 QEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAAKE 182
>MSRA_PHOLL (Q7MYW1) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 215 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Frame = -1 Query: 361 WEEERPAGDLKKGGE--PQALPAVDKVDPQQERPAGADQDEASAEYDQQ--RRPVAS 203 WE PA +++GG+ Q A+ V PQQ A A ++ QQ RP+ + Sbjct: 117 WENHDPAQGMRQGGDIGSQYRSAIYTVSPQQHELALASREHFQKAMQQQSDNRPITT 173
>VGLD_PRVRI (P07645) Protein gp50| Length = 402 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 91 LGLCVFCFFRLRVLLGGSCMXDAPDGDEL 5 +G+CV+ FFRLR G + D DEL Sbjct: 368 VGVCVYIFFRLRGAKGYRLLGGPADADEL 396
>NUDT8_HUMAN (Q8WV74) Nucleoside diphosphate-linked moiety X motif 8,| mitochondrial precursor (EC 3.6.1.-) (Nudix motif 8) Length = 236 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/46 (34%), Positives = 20/46 (43%) Frame = -1 Query: 373 DTHGWEEERPAGDLKKGGEPQALPAVDKVDPQQERPAGADQDEASA 236 + H W RP D +K L V +DPQ RP + DE A Sbjct: 96 EEHVWGLLRPVYDPQKATVVPVLAGVGPLDPQSLRPNSEEVDEVFA 141
>CUTA_MOUSE (Q9CQ89) Protein CutA precursor (Brain acetylcholinesterase| putative membrane anchor) Length = 177 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = +2 Query: 248 VLIGAGGPLLLRVYFVHGGQRLWLSALLQISGWPLLLPPMCVSLFRG 388 VL+G G LLL LW+ ALL ++ LLLP +S+ G Sbjct: 9 VLLGGGATLLLSF--------LWMPALLPVASRLLLLPRALLSMASG 47
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = -1 Query: 367 HGWEEERPAGDLKKGGEPQALPAVDKVDPQQERPAGADQDEASAEYDQQRRPV 209 +G++++ G ++ GG P + V PQQ+RP G + ++ QQ+ P+ Sbjct: 453 YGYQQQLVPG-MRPGGGPVPSFFMPMVQPQQQRPGGG-RRPGGIQHSQQQNPM 503
>DNAA_STRCO (P27902) Chromosomal replication initiator protein dnaA| Length = 656 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = -1 Query: 388 TAKEGDTHGWEEERPAGDLKKGGEPQALPAVDKVDPQQERPAGADQDEASAEYDQQ 221 T+ + D ERP+ D ++G QA ++ ++P G D D+ +YDQ+ Sbjct: 212 TSYQQDYRPQPPERPSYDAQRGDYEQARGEYEQPRGDYDKPRG-DYDQQRGDYDQR 266
>AKAP5_BOVIN (P24275) A-kinase anchor protein 5 (A-kinase anchor protein 75 kDa)| (AKAP 75) (cAMP-dependent protein kinase regulatory subunit II high affinity binding protein) (P75) Length = 428 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = -1 Query: 379 EGDTHGWEEERPAGDLKKGGEPQALPAVDKVDPQQERPAGADQDEASAEYDQQ 221 E DT EE K+ +PQ + ++ D +QE P G++ +SA DQQ Sbjct: 231 EKDTEMLEE-------KQSIQPQHVSPLEASDTEQELPVGSEVPPSSAVPDQQ 276
>RPGR1_MOUSE (Q9EPQ2) X-linked retinitis pigmentosa GTPase regulator-interacting| protein 1 (RPGR-interacting protein 1) Length = 1331 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = -2 Query: 384 RKRETHMGGRRSGQPEI*RRA---ESHRRCPPWTK*TRSRSGPP-APIRTRQA 238 R+R T++ + QP++ A E RR PW + S S PP AP+ R+A Sbjct: 71 RRRRTNVQRSTTTQPDLRTLAVLQEPERRRRPWVSASPSPSAPPRAPVPGRKA 123
>TOP1_SALTY (P0A2I1) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 865 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -1 Query: 364 GWEEERPAGDLKKGGEPQALPAVDKVD 284 GW + PA L+KG E + LPAV+K D Sbjct: 433 GWTKVMPA--LRKGDEDRTLPAVNKGD 457
>TOP1_SALTI (P0A2I2) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 865 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -1 Query: 364 GWEEERPAGDLKKGGEPQALPAVDKVD 284 GW + PA L+KG E + LPAV+K D Sbjct: 433 GWTKVMPA--LRKGDEDRTLPAVNKGD 457
>NEST_RAT (P21263) Nestin| Length = 1805 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 325 GGEPQALPAVDKVDPQQERPAGADQDEA 242 G E A+ +KVDP+ +P G DQ+ A Sbjct: 1006 GNEQMAVSPPEKVDPELPKPLGNDQEIA 1033
>DNM3A_HUMAN (Q9Y6K1) DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37)| (Dnmt3a) (DNA methyltransferase HsaIIIA) (DNA MTase HsaIIIA) (M.HsaIIIA) Length = 909 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = -1 Query: 364 GWEEERPAGDLKKGGEPQALPAVDKVDPQQERPAGADQDEASAE 233 G E P GDL+K EPQ P++ PAG + A AE Sbjct: 80 GASELLPNGDLEKRSEPQ---------PEEGSPAGGQKGGAPAE 114
>ANK1_MOUSE (Q02357) Ankyrin-1 (Erythrocyte ankyrin)| Length = 1862 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -1 Query: 397 VAATAKEGDTHGWEEERPAGD----LKKGGEPQALPAVDKVDPQQERPAGADQDEASAEY 230 V + A+ D+ EE+ D L + E A+P + V P+ DQ++AS EY Sbjct: 821 VGSKAERRDSRDVGEEKELLDFVPKLDQVVESPAIPRIPCVTPETVVIRSEDQEQASKEY 880 Query: 229 DQ 224 D+ Sbjct: 881 DE 882
>TOP1_ECOLI (P06612) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 865 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -1 Query: 364 GWEEERPAGDLKKGGEPQALPAVDKVD 284 GW + PA L+KG E + LPAV+K D Sbjct: 433 GWTKVMPA--LRKGDEDRILPAVNKGD 457
>LCR58_ARATH (P82772) Putative low-molecular-weight cysteine-rich protein LCR58| precursor Length = 127 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -1 Query: 151 LCCFLHGRNGTSSYGCHEDQLGLCVFCFFRLRVLLGGSCMXDAPDGD 11 L F+ G N T + C E LGLC C R + G SC+ DG+ Sbjct: 14 LIIFVSGVNQTRADSCDES-LGLCETCDERCQAKHGPSCISKC-DGE 58
>Y091_METJA (Q57556) Hypothetical protein MJ0091| Length = 302 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%) Frame = +2 Query: 227 VIFSACLVLIGAGGPLLLRVYFVHGGQRLWLSALL--QISGWPLL-----LPPMCVSLFR 385 V+FS L++IG G L+ FV G +++ L+ + ++ G+ L+ LP + VSL Sbjct: 161 VVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAA 220 Query: 386 GRRH 397 +R+ Sbjct: 221 AKRN 224
>TNNI3_CAEEL (Q9XUN9) Troponin I 3 (TnI 3)| Length = 260 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = -1 Query: 358 EEERPAGDLKKGGEPQALPAVDKVDPQQERPAGADQDEASAE 233 EEE +L EP+A P + +P E P +++E E Sbjct: 217 EEEAAPVELAAPVEPEAEPEPEAAEPAAEEPEAEEEEEEEEE 258
>RGAP1_MOUSE (Q9WVM1) Rac GTPase-activating protein 1 (MgcRacGAP)| Length = 628 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -2 Query: 303 PPWTK*TRSRSGPPAPIRTRQALNMTSSEGR 211 P WT+ +R +SGP P+ + ALN E R Sbjct: 241 PSWTR-SRGKSGPLQPVNSDSALNSRPLEPR 270 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,233,334 Number of Sequences: 219361 Number of extensions: 853879 Number of successful extensions: 3104 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2970 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3097 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
