ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187666.1| Oryza sativa (japonica cultivar-group), predic... 137 3e-29
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 137 3e-29
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 137 3e-29
4gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome... 137 3e-29
5dbj|AK105352.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 7e-27
6gb|AF244690.1|AF244690 Zea mays glutathione S-transferase GST 25... 44 0.34
7gb|AE004557.1| Pseudomonas aeruginosa PAO1, section 118 of 529 o... 44 0.34
8gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.3
9ref|XM_545122.2| PREDICTED: Canis familiaris similar to G protei... 42 1.3
10emb|AL157884.9| Human DNA sequence from clone RP11-462B18 on chr... 42 1.3
11emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.3
12emb|BX640431.1| Bordetella parapertussis strain 12822, complete ... 42 1.3
13emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 42 1.3
14gb|AC015553.21|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell ... 42 1.3
15gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.3
16ref|XM_450941.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
17ref|XM_419514.1| PREDICTED: Gallus gallus similar to PYST9371 (L... 40 5.3
18gb|AC134472.4| Mus musculus BAC clone RP23-123E16 from chromosom... 40 5.3
19ref|XM_613216.2| PREDICTED: Bos taurus similar to Ankyrin repeat... 40 5.3
20gb|AC134458.2| Mus musculus BAC clone RP23-358B17 from chromosom... 40 5.3
21emb|AJ488769.2|AFR488769 Actinoplanes firuliensis partial friuli... 40 5.3
22emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.3
23emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.3
24emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 40 5.3
25gb|AC098719.3| Mus musculus clone RP23-2M3, complete sequence 40 5.3
26gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.3
27gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.3
28gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.3
29dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
30gb|AF265558.1|AF265558 Mycobacterium smegmatis threonyl tRNA syn... 40 5.3
31gb|AE004796.1| Pseudomonas aeruginosa PAO1, section 357 of 529 o... 40 5.3
32gb|AC011456.2|AC011456 Homo sapiens chromosome 19 clone CTC-360P... 40 5.3
33dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.3
34gb|AY603572.1| Culicoides sonorensis clone Cssg00016 putative se... 40 5.3
35dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
36dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
37dbj|AK064135.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
38dbj|AK063511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
39gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.3
40gb|AC005547.1|AC005547 Homo sapiens chromosome 19, cosmid R29228... 40 5.3
41gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, compl... 40 5.3 
>ref|NM_187666.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1200

 Score =  137 bits (69), Expect = 3e-29
 Identities = 123/141 (87%)
 Strand = Plus / Plus

                                                                       
Query: 211 ccggccttcgctgctggtcatattcagcgcttgcctcgtcctgatcggcgccggcgggcc 270
           |||||| ||||||||||||||||||||||| |||||||||||  ||||||||||||||||
Sbjct: 132 ccggccgtcgctgctggtcatattcagcgcgtgcctcgtcctcctcggcgccggcgggcc 191

                                                                       
Query: 271 gctcctgctgcgggtctactttgtccacggcgggcaacgcctgtggctctccgcccttct 330
           |||||| || || |||||||| || |||||||||   || |||||||| ||||||   ||
Sbjct: 192 gctcctcctccgcgtctacttcgtgcacggcgggacccggctgtggctgtccgccacgct 251

                                
Query: 331 tcagatctccggctggccgct 351
            ||||||||||||||||||||
Sbjct: 252 ccagatctccggctggccgct 272
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  137 bits (69), Expect = 3e-29
 Identities = 123/141 (87%)
 Strand = Plus / Minus

                                                                           
Query: 211     ccggccttcgctgctggtcatattcagcgcttgcctcgtcctgatcggcgccggcgggcc 270
               |||||| ||||||||||||||||||||||| |||||||||||  ||||||||||||||||
Sbjct: 4581861 ccggccgtcgctgctggtcatattcagcgcgtgcctcgtcctcctcggcgccggcgggcc 4581802

                                                                           
Query: 271     gctcctgctgcgggtctactttgtccacggcgggcaacgcctgtggctctccgcccttct 330
               |||||| || || |||||||| || |||||||||   || |||||||| ||||||   ||
Sbjct: 4581801 gctcctcctccgcgtctacttcgtgcacggcgggacccggctgtggctgtccgccacgct 4581742

                                    
Query: 331     tcagatctccggctggccgct 351
                ||||||||||||||||||||
Sbjct: 4581741 ccagatctccggctggccgct 4581721
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  137 bits (69), Expect = 3e-29
 Identities = 123/141 (87%)
 Strand = Plus / Minus

                                                                           
Query: 211     ccggccttcgctgctggtcatattcagcgcttgcctcgtcctgatcggcgccggcgggcc 270
               |||||| ||||||||||||||||||||||| |||||||||||  ||||||||||||||||
Sbjct: 4581976 ccggccgtcgctgctggtcatattcagcgcgtgcctcgtcctcctcggcgccggcgggcc 4581917

                                                                           
Query: 271     gctcctgctgcgggtctactttgtccacggcgggcaacgcctgtggctctccgcccttct 330
               |||||| || || |||||||| || |||||||||   || |||||||| ||||||   ||
Sbjct: 4581916 gctcctcctccgcgtctacttcgtgcacggcgggacccggctgtggctgtccgccacgct 4581857

                                    
Query: 331     tcagatctccggctggccgct 351
                ||||||||||||||||||||
Sbjct: 4581856 ccagatctccggctggccgct 4581836
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>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09,
             complete sequence
          Length = 148894

 Score =  137 bits (69), Expect = 3e-29
 Identities = 123/141 (87%)
 Strand = Plus / Minus

                                                                         
Query: 211   ccggccttcgctgctggtcatattcagcgcttgcctcgtcctgatcggcgccggcgggcc 270
             |||||| ||||||||||||||||||||||| |||||||||||  ||||||||||||||||
Sbjct: 22816 ccggccgtcgctgctggtcatattcagcgcgtgcctcgtcctcctcggcgccggcgggcc 22757

                                                                         
Query: 271   gctcctgctgcgggtctactttgtccacggcgggcaacgcctgtggctctccgcccttct 330
             |||||| || || |||||||| || |||||||||   || |||||||| ||||||   ||
Sbjct: 22756 gctcctcctccgcgtctacttcgtgcacggcgggacccggctgtggctgtccgccacgct 22697

                                  
Query: 331   tcagatctccggctggccgct 351
              ||||||||||||||||||||
Sbjct: 22696 ccagatctccggctggccgct 22676
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>dbj|AK105352.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A09, full
           insert sequence
          Length = 1506

 Score =  129 bits (65), Expect = 7e-27
 Identities = 123/141 (87%), Gaps = 1/141 (0%)
 Strand = Plus / Plus

                                                                       
Query: 211 ccggccttcgctgctggtcatattcagcgcttgcctcgtcctgatcggcgccggcgggcc 270
           |||||| ||||||||||||||||||||||| |||||||||||  ||||||||||||||||
Sbjct: 242 ccggccgtcgctgctggtcatattcagcgcgtgcctcgtcctc-tcggcgccggcgggcc 300

                                                                       
Query: 271 gctcctgctgcgggtctactttgtccacggcgggcaacgcctgtggctctccgcccttct 330
           |||||| || || |||||||| || |||||||||   || |||||||| ||||||   ||
Sbjct: 301 gctcctcctccgcgtctacttcgtgcacggcgggacccggctgtggctgtccgccacgct 360

                                
Query: 331 tcagatctccggctggccgct 351
            ||||||||||||||||||||
Sbjct: 361 ccagatctccggctggccgct 381
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>gb|AF244690.1|AF244690 Zea mays glutathione S-transferase GST 25 mRNA, partial cds
          Length = 773

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 158 agcgcctcgccggcccgcgcca 179
           ||||||||||||||||||||||
Sbjct: 406 agcgcctcgccggcccgcgcca 385
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>gb|AE004557.1| Pseudomonas aeruginosa PAO1, section 118 of 529 of the complete
            genome
          Length = 12561

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 292  tgtccacggcgggcaacgcctg 313
            ||||||||||||||||||||||
Sbjct: 3607 tgtccacggcgggcaacgcctg 3586
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 159     gcgcctcgccggcccgcgcca 179
               |||||||||||||||||||||
Sbjct: 1492419 gcgcctcgccggcccgcgcca 1492399
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>ref|XM_545122.2| PREDICTED: Canis familiaris similar to G protein-coupled receptor 156
            (LOC488000), mRNA
          Length = 2427

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 264  gcgggccgctcctgctgcggg 284
            |||||||||||||||||||||
Sbjct: 1237 gcgggccgctcctgctgcggg 1217
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>emb|AL157884.9| Human DNA sequence from clone RP11-462B18 on chromosome 9p13.1-21.1
              Contains a pseudogene similar to part of membrane guanylyl
              cyclase, a ribosomal protein S11 (RPS11) pseudogene, a
              novel gene and a CpG island, complete sequence
          Length = 176932

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 359    ccacccatgtgtgtctccctctttc 383
              |||||||||||||||||| ||||||
Sbjct: 149068 ccacccatgtgtgtctccttctttc 149092
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 150    agacgcccagcgcctcgccgg 170
              |||||||||||||||||||||
Sbjct: 225246 agacgcccagcgcctcgccgg 225266
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>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 150    agacgcccagcgcctcgccgg 170
              |||||||||||||||||||||
Sbjct: 241207 agacgcccagcgcctcgccgg 241227
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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 150    agacgcccagcgcctcgccgg 170
              |||||||||||||||||||||
Sbjct: 133883 agacgcccagcgcctcgccgg 133863



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 161   gcctcgccggcccgcgccatggcc 184
             |||||||||||| |||||||||||
Sbjct: 55090 gcctcgccggccagcgccatggcc 55067
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>gb|AC015553.21|AC015553 Homo sapiens 9 BAC RP11-100N10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 162063

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 359   ccacccatgtgtgtctccctctttc 383
             |||||||||||||||||| ||||||
Sbjct: 88565 ccacccatgtgtgtctccttctttc 88589
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 179     atggccgcctcgatggcctcg 199
               |||||||||||||||||||||
Sbjct: 2614210 atggccgcctcgatggcctcg 2614230



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    cgcccagcgcctcgccggcc 172
              ||||||||||||||||||||
Sbjct: 692807 cgcccagcgcctcgccggcc 692788
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>ref|XM_450941.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1364

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 71/88 (80%)
 Strand = Plus / Plus

                                                                       
Query: 264 gcgggccgctcctgctgcgggtctactttgtccacggcgggcaacgcctgtggctctccg 323
           ||||||||||||| || || | ||||||  ||| ||||||  | |||  |||||||||| 
Sbjct: 229 gcgggccgctcctcctccgcgcctacttcctccgcggcggcaaccgcaagtggctctcca 288

                                       
Query: 324 cccttcttcagatctccggctggccgct 351
            |||||| |||| | |||||||||||||
Sbjct: 289 gccttctccagaccgccggctggccgct 316
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>ref|XM_419514.1| PREDICTED: Gallus gallus similar to PYST9371 (LOC421465), mRNA
          Length = 3350

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 261  ccggcgggccgctcctgctgcggg 284
            ||||||||||||||| ||||||||
Sbjct: 1816 ccggcgggccgctccggctgcggg 1793
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>gb|AC134472.4| Mus musculus BAC clone RP23-123E16 from chromosome 18, complete sequence
          Length = 185134

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 349    gctcctcctcccacccatgtgtgt 372
              ||||||||| ||||||||||||||
Sbjct: 153191 gctcctccttccacccatgtgtgt 153214
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>ref|XM_613216.2| PREDICTED: Bos taurus similar to Ankyrin repeat and SOCS box
           protein 3 (ASB-3) (LOC540802), mRNA
          Length = 2049

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 171 cccgcgccatggccgcctcgatggcctc 198
           |||||||| ||||||||||| |||||||
Sbjct: 151 cccgcgccctggccgcctcgctggcctc 124
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>gb|AC134458.2| Mus musculus BAC clone RP23-358B17 from chromosome 18, complete sequence
          Length = 179314

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 349    gctcctcctcccacccatgtgtgt 372
              ||||||||| ||||||||||||||
Sbjct: 158664 gctcctccttccacccatgtgtgt 158641
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>emb|AJ488769.2|AFR488769 Actinoplanes firuliensis partial friulimicin biosynthetic gene
            cluster
          Length = 15457

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 152  acgcccagcgcctcgccggc 171
            ||||||||||||||||||||
Sbjct: 1443 acgcccagcgcctcgccggc 1462
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 251    ctgatcggcgccggcgggccgctc 274
              |||||||||||||||| |||||||
Sbjct: 707281 ctgatcggcgccggcgagccgctc 707258
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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 161    gcctcgccggcccgcgccatggcc 184
              |||||||||||| |||||||||||
Sbjct: 220704 gcctcgccggccagcgccatggcc 220681
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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 161    gcctcgccggcccgcgccatggcc 184
              |||||||||||| |||||||||||
Sbjct: 132730 gcctcgccggccagcgccatggcc 132707
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>gb|AC098719.3| Mus musculus clone RP23-2M3, complete sequence
          Length = 219626

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    aagaagcagaacacacataa 85
             ||||||||||||||||||||
Sbjct: 37922 aagaagcagaacacacataa 37903
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 175     cgccatggccgcctcgatggcctcgccg 202
               ||||| ||| ||||||||||||||||||
Sbjct: 3692303 cgccagggctgcctcgatggcctcgccg 3692276
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 153     cgcccagcgcctcgccggcc 172
               ||||||||||||||||||||
Sbjct: 2862193 cgcccagcgcctcgccggcc 2862212
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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    cgcctcgccggcccgcgcca 179
              ||||||||||||||||||||
Sbjct: 362371 cgcctcgccggcccgcgcca 362352
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                            
Query: 264      gcgggccgctcctgctgcgggtctactttgtccacggcgggcaacgcctgtggctctccg 323
                ||||||||||||| || || | ||||||  ||| ||||||  | |||  |||||||||| 
Sbjct: 17696382 gcgggccgctcctcctccgcgcctacttcctccgcggcggcaaccgcaagtggctctcca 17696323

                                            
Query: 324      cccttcttcagatctccggctggccgct 351
                 |||||| |||| | |||||||||||||
Sbjct: 17696322 gccttctccagaccgccggctggccgct 17696295
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>gb|AF265558.1|AF265558 Mycobacterium smegmatis threonyl tRNA synthetase (thrS) gene, partial
            cds; phosphatidylinositol synthase (pgsA) and putative
            acyltransferase genes, complete cds; putative
            alpha-mannosyl transferase gene, partial cds; and unknown
            gene
          Length = 2553

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 246  tcgtcctgatcggcgccggc 265
            ||||||||||||||||||||
Sbjct: 1367 tcgtcctgatcggcgccggc 1386
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>gb|AE004796.1| Pseudomonas aeruginosa PAO1, section 357 of 529 of the complete
            genome
          Length = 12098

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 173  cgcgccatggccgcctcgatggcc 196
            |||||| |||||||||||||||||
Sbjct: 7215 cgcgccttggccgcctcgatggcc 7192
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>gb|AC011456.2|AC011456 Homo sapiens chromosome 19 clone CTC-360P9, complete sequence
          Length = 156357

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    ctcctcctcccacccatgtg 369
              ||||||||||||||||||||
Sbjct: 142890 ctcctcctcccacccatgtg 142909
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 255     tcggcgccggcgggccgctcctgc 278
               |||||| |||||||||||||||||
Sbjct: 3692235 tcggcgacggcgggccgctcctgc 3692258
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>gb|AY603572.1| Culicoides sonorensis clone Cssg00016 putative secreted salivary
           protein mRNA, complete cds
          Length = 558

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 gccatgcaagaagcagcaaa 150
           ||||||||||||||||||||
Sbjct: 238 gccatgcaagaagcagcaaa 257
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>dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1005_D12
          Length = 150588

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                          
Query: 264    gcgggccgctcctgctgcgggtctactttgtccacggcgggcaacgcctgtggctctccg 323
              ||||||||||||| || || | ||||||  ||| ||||||  | |||  |||||||||| 
Sbjct: 145104 gcgggccgctcctcctccgcgcctacttcctccgcggcggcaaccgcaagtggctctcca 145045

                                          
Query: 324    cccttcttcagatctccggctggccgct 351
               |||||| |||| | |||||||||||||
Sbjct: 145044 gccttctccagaccgccggctggccgct 145017
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>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0676H02
          Length = 144252

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 71/88 (80%)
 Strand = Plus / Minus

                                                                        
Query: 264  gcgggccgctcctgctgcgggtctactttgtccacggcgggcaacgcctgtggctctccg 323
            ||||||||||||| || || | ||||||  ||| ||||||  | |||  |||||||||| 
Sbjct: 5016 gcgggccgctcctcctccgcgcctacttcctccgcggcggcaaccgcaagtggctctcca 4957

                                        
Query: 324  cccttcttcagatctccggctggccgct 351
             |||||| |||| | |||||||||||||
Sbjct: 4956 gccttctccagaccgccggctggccgct 4929
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>dbj|AK064135.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G04, full
           insert sequence
          Length = 1363

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 71/88 (80%)
 Strand = Plus / Plus

                                                                       
Query: 264 gcgggccgctcctgctgcgggtctactttgtccacggcgggcaacgcctgtggctctccg 323
           ||||||||||||| || || | ||||||  ||| ||||||  | |||  |||||||||| 
Sbjct: 229 gcgggccgctcctcctccgcgcctacttcctccgcggcggcaaccgcaagtggctctcca 288

                                       
Query: 324 cccttcttcagatctccggctggccgct 351
            |||||| |||| | |||||||||||||
Sbjct: 289 gccttctccagaccgccggctggccgct 316
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>dbj|AK063511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-G01, full
           insert sequence
          Length = 1879

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 71/88 (80%)
 Strand = Plus / Plus

                                                                       
Query: 264 gcgggccgctcctgctgcgggtctactttgtccacggcgggcaacgcctgtggctctccg 323
           ||||||||||||| || || | ||||||  ||| ||||||  | |||  |||||||||| 
Sbjct: 231 gcgggccgctcctcctccgcgcctacttcctccgcggcggcaaccgcaagtggctctcca 290

                                       
Query: 324 cccttcttcagatctccggctggccgct 351
            |||||| |||| | |||||||||||||
Sbjct: 291 gccttctccagaccgccggctggccgct 318
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 179     atggccgcctcgatggcctc 198
               ||||||||||||||||||||
Sbjct: 3345566 atggccgcctcgatggcctc 3345585
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>gb|AC005547.1|AC005547 Homo sapiens chromosome 19, cosmid R29228, complete sequence
          Length = 46127

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   ctcctcctcccacccatgtg 369
             ||||||||||||||||||||
Sbjct: 21208 ctcctcctcccacccatgtg 21227
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>gb|AC149588.4| Mus musculus BAC clone RP23-366I10 from 15, complete sequence
          Length = 200656

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  aagaagcagaacacacataa 85
           ||||||||||||||||||||
Sbjct: 629 aagaagcagaacacacataa 648


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,093,939
Number of Sequences: 3902068
Number of extensions: 3093939
Number of successful extensions: 68147
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 66651
Number of HSP's gapped (non-prelim): 1501
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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