ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09b06 |
|---|---|
| Clone Library Name | barley_pub |
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 100 bits (250), Expect = 1e-21 Identities = 53/92 (57%), Positives = 66/92 (71%), Gaps = 1/92 (1%) Frame = +3 Query: 162 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 338 A T TC + G+++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCA--TLGEMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 339 AGTSTGALVASMLAAPGENKRPLFQAKDINXF 434 GTSTG L+ +M+ P EN RP AKDI F Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPF 105
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 99.4 bits (246), Expect = 3e-21 Identities = 49/80 (61%), Positives = 61/80 (76%), Gaps = 1/80 (1%) Frame = +3 Query: 198 GQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVIAGTSTGALVASM 374 G+++TVLSIDGGGI+G+IP+TIL LE +LQE+D DAR+ADYFDVI GTSTG L+ +M Sbjct: 26 GEMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAM 85 Query: 375 LAAPGENKRPLFQAKDINXF 434 + P E RP AKDI F Sbjct: 86 ITTPNETNRPFAAAKDIVPF 105
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 97.4 bits (241), Expect = 1e-20 Identities = 52/92 (56%), Positives = 64/92 (69%), Gaps = 1/92 (1%) Frame = +3 Query: 162 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 338 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 7 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 64 Query: 339 AGTSTGALVASMLAAPGENKRPLFQAKDINXF 434 GTSTG L+ +M+ P EN RP AKDI F Sbjct: 65 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPF 96
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 97.4 bits (241), Expect = 1e-20 Identities = 52/92 (56%), Positives = 64/92 (69%), Gaps = 1/92 (1%) Frame = +3 Query: 162 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 338 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 339 AGTSTGALVASMLAAPGENKRPLFQAKDINXF 434 GTSTG L+ +M+ P EN RP AKDI F Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPF 105
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 97.4 bits (241), Expect = 1e-20 Identities = 52/92 (56%), Positives = 64/92 (69%), Gaps = 1/92 (1%) Frame = +3 Query: 162 APTCVTCPPPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELDG-PDARIADYFDVI 338 A T TC + ++TVLSIDGGGI+G+IP+ IL LE +LQE+D DAR+ADYFDVI Sbjct: 16 ATTSSTCAKLEE--MVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVI 73 Query: 339 AGTSTGALVASMLAAPGENKRPLFQAKDINXF 434 GTSTG L+ +M+ P EN RP AKDI F Sbjct: 74 GGTSTGGLLTAMITTPNENNRPFAAAKDIVPF 105
>PA2G6_HUMAN (O60733) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 806 Score = 38.1 bits (87), Expect = 0.009 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = +3 Query: 213 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 368 +L +DGGG++GLI +L +E D FD +AGTSTG ++A Sbjct: 480 LLCLDGGGVKGLIIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 525
>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 751 Score = 37.7 bits (86), Expect = 0.012 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 213 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 368 +L +DGGG++GL+ +L +E D FD +AGTSTG ++A Sbjct: 425 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 470
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 37.7 bits (86), Expect = 0.012 Identities = 19/52 (36%), Positives = 29/52 (55%) Frame = +3 Query: 213 VLSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVA 368 +L +DGGG++GL+ +L +E D FD +AGTSTG ++A Sbjct: 426 LLCLDGGGVKGLVIIQLLIAIEK------ASGVATKDLFDWVAGTSTGGILA 471
>YLBK_BACSU (O34731) Hypothetical UPF0028 protein ylbK| Length = 260 Score = 30.8 bits (68), Expect = 1.5 Identities = 21/56 (37%), Positives = 28/56 (50%) Frame = +3 Query: 216 LSIDGGGIRGLIPSTILACLESKLQELDGPDARIADYFDVIAGTSTGALVASMLAA 383 L++ GG RGL +L+ L E+D +IAG+S GALV S AA Sbjct: 8 LALGSGGARGLAHLGVLSSLHKHQIEVD-----------MIAGSSMGALVGSFYAA 52
>ACRO_RAT (P29293) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light| chain; Acrosin heavy chain] Length = 437 Score = 29.6 bits (65), Expect = 3.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 187 GGQVTHVGAWPWLHMVSLAPSHCS 116 GGQ + GAWPW+ + + SH S Sbjct: 45 GGQTSSPGAWPWMVSLQIFTSHNS 68
>VG75_ICHV1 (Q00129) Hypothetical gene 75 protein| Length = 423 Score = 29.6 bits (65), Expect = 3.3 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 144 MCSHGHAPTCVTCPPPSQGQLITV 215 +CSHG +C+T PP QG T+ Sbjct: 139 LCSHGVTASCITMGPPVQGMPETI 162
>PCX3_MOUSE (Q8VI59) Pecanex-like protein 3| Length = 1620 Score = 29.3 bits (64), Expect = 4.3 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -3 Query: 418 LAWKSGRLFSPGAASMDATSAPVLVPAITSK*SAMRASGPSSSWSLDSRQ 269 L W RL P AS T P P+ S + + + GPS WSL R+ Sbjct: 1487 LQWPPPRLPGPPPASPAPTEGPR--PSRPSGPALLNSEGPSGKWSLGGRK 1534
>COAD_BDEBA (Q6MQ60) Phosphopantetheine adenylyltransferase (EC 2.7.7.3)| (Pantetheine-phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase) Length = 160 Score = 28.9 bits (63), Expect = 5.7 Identities = 8/26 (30%), Positives = 21/26 (80%) Frame = +3 Query: 216 LSIDGGGIRGLIPSTILACLESKLQE 293 ++I+GG ++GL+P ++ +E+K+++ Sbjct: 135 VAINGGALKGLVPDVVVEAMENKIRK 160
>CAC1C_RAT (P22002) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (RAT brain class C) (RBC) Length = 2169 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 Query: 19 SELHEQEHEQCSPGKSCYSNQR 84 +E+H EH QCSP S N R Sbjct: 1330 TEVHPAEHTQCSPSMSAEENSR 1351
>EGFL8_MOUSE (Q6GUQ1) EGF-like domain-containing protein 8 precursor (Epidermal| growth factor-like protein 8) (Multiple EGF-like domain protein 8) Length = 293 Score = 28.1 bits (61), Expect = 9.7 Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 16/107 (14%) Frame = +3 Query: 132 AKLTMCSHGHAPT----CVTCPPPSQGQLITVLSIDGGGIRGLIPS--TILACLESKLQE 293 A LT+CSHG T +CP P VL +DG G P T + L ++E Sbjct: 150 ASLTLCSHGCLNTLGSFLCSCPHP------LVLGLDGRTCAGGPPESPTSASILSVAVRE 203 Query: 294 LDGPDAR-----IADYFDVIA-----GTSTGALVASMLAAPGENKRP 404 D + R +A+ + GA V ++L P E RP Sbjct: 204 ADSEEERALRWEVAELRGRLEKLEQWAKQAGAWVRAVLPMPPEELRP 250
>PCDH9_HUMAN (Q9HC56) Protocadherin-9 precursor| Length = 1203 Score = 28.1 bits (61), Expect = 9.7 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Frame = +3 Query: 186 PPSQGQLITVLSIDGGGIRGLIPSTILACLESKLQELD-----GPDARIADYFDVIAGTS 350 PP Q + LS+ RGL +TI A E + D GP+ A +FD+ Sbjct: 466 PPIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNADIVYQLGPN---ASFFDL--DRK 520 Query: 351 TGALVASMLAAPGENKRPLF 410 TG L AS + E +R +F Sbjct: 521 TGVLTASRVFDREEQERFIF 540
>UVRA_CHLMU (Q9PK60) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 1787 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +3 Query: 198 GQLITVLSIDGGGIRGLIPSTILACLESKLQELDGPDARI 317 GQL V + G G LI T++ C+E +++ P+ + Sbjct: 618 GQLTVVTGVSGSGKSSLINDTLVPCVEEFIEQGSCPNLAV 657 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,118,360 Number of Sequences: 219361 Number of extensions: 702217 Number of successful extensions: 2543 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2465 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2534 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
