ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09b06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK058531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A08, full insert sequence Length = 1618 Score = 272 bits (137), Expect = 9e-70 Identities = 185/201 (92%) Strand = Plus / Plus Query: 182 cccgcccccgtcgcaggggcagctcatcacggtgctcagcatcgacggcggcggcatccg 241 |||||| |||| |||||| ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 262 cccgccgccgtgccaggggaggctcatcaccgtgctgagcatcgacggcggcggcatccg 321 Query: 242 cggcctcatcccctccaccatcctcgcctgcctcgagtccaagctccaggagctggacgg 301 |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 322 cggcctcatcccggccaccatcctcgcctgcctcgaggccaagctccaggagctggacgg 381 Query: 302 gccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacgagcaccggcgcgct 361 |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 382 gccggaggcgaggatcgcggactacttcgacgtgatcgccgggacgagcaccggggcgct 441 Query: 362 ggtcgcgtccatgctggcggc 382 | || |||||||||||||||| Sbjct: 442 gatcacgtccatgctggcggc 462
>gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster Length = 162249 Score = 242 bits (122), Expect = 8e-61 Identities = 194/218 (88%) Strand = Plus / Minus Query: 189 ccgtcgcaggggcagctcatcacggtgctcagcatcgacggcggcggcatccgcggcctc 248 |||||| ||||| ||||||||||| | || ||||||||||||||||||||||||||||| Sbjct: 43084 ccgtcgaaggggaagctcatcacgattctgagcatcgacggcggcggcatccgcggcctt 43025 Query: 249 atcccctccaccatcctcgcctgcctcgagtccaagctccaggagctggacgggccggac 308 ||||| | |||||| |||| | ||||||| |||||||||||||||||||||| || ||| Sbjct: 43024 atcccggcgaccatcatcgcatacctcgaggccaagctccaggagctggacggcccagac 42965 Query: 309 gcgcgcatcgcggactacttcgacgtgatcgccgggacgagcaccggcgcgctggtcgcg 368 || |||||||| |||||||||||||||||||||||||||||||||||||| ||| || || Sbjct: 42964 gcacgcatcgccgactacttcgacgtgatcgccgggacgagcaccggcgccctgctcacg 42905 Query: 369 tccatgctggcggcccccggcgagaacaagcggccgct 406 |||||||||||||| |||| ||| ||||| |||||||| Sbjct: 42904 tccatgctggcggcgcccgacgacaacaaccggccgct 42867 Score = 192 bits (97), Expect = 7e-46 Identities = 178/205 (86%) Strand = Plus / Plus Query: 202 agctcatcacggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccacca 261 ||||||||||| | ||||||||||| |||||||||||||||||||||||||| | |||| Sbjct: 56154 agctcatcacgattctcagcatcgatggcggcggcatccgcggcctcatcccggcgacca 56213 Query: 262 tcctcgcctgcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcgg 321 || |||| ||||||| ||||||| |||||||||||||| || || || || || || | Sbjct: 56214 tcatcgcacacctcgaggccaagctgcaggagctggacggcccagatgctcggattgccg 56273 Query: 322 actacttcgacgtgatcgccgggacgagcaccggcgcgctggtcgcgtccatgctggcgg 381 ||||||||||||||||||||||||||||||||||||| ||| || |||| |||||||||| Sbjct: 56274 actacttcgacgtgatcgccgggacgagcaccggcgccctgctcacgtcgatgctggcgg 56333 Query: 382 cccccggcgagaacaagcggccgct 406 | |||| ||| ||||| |||||||| Sbjct: 56334 cgcccgacgacaacaaccggccgct 56358 Score = 165 bits (83), Expect = 1e-37 Identities = 110/119 (92%) Strand = Plus / Plus Query: 288 caggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 347 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 72885 caggagctggacgggccggacgcacgcatcgccgactacttcgacgtgatcgccgggacg 72944 Query: 348 agcaccggcgcgctggtcgcgtccatgctggcggcccccggcgagaacaagcggccgct 406 ||||||||||||||| | |||| ||||||||||| |||| |||||||| ||||||||| Sbjct: 72945 agcaccggcgcgctgctgacgtcgatgctggcggcgcccgacgagaacaggcggccgct 73003 Score = 101 bits (51), Expect = 2e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 189 ccgtcgcaggggcagctcatcacggtgctcagcatcgacggcggcggcatccgcggcctc 248 |||||||||||| ||||||||| || || |||||||| |||||||||||||| || ||| Sbjct: 72686 ccgtcgcaggggaggctcatcaccgttctgagcatcgatggcggcggcatccgggggctc 72745 Query: 249 atcccctccaccatcctcgcctgcctcgagtccaagctccagg 291 ||||| |||||||| || ||||||||||| |||||||||||| Sbjct: 72746 atccctgccaccatcatcacctgcctcgagaccaagctccagg 72788
>dbj|AK067827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120O20, full insert sequence Length = 2434 Score = 232 bits (117), Expect = 8e-58 Identities = 180/201 (89%) Strand = Plus / Plus Query: 182 cccgcccccgtcgcaggggcagctcatcacggtgctcagcatcgacggcggcggcatccg 241 |||||| |||| |||||| ||||||||| ||||| ||||||||||||||| ||||||| Sbjct: 120 cccgccgccgtgccaggggaggctcatcaccgtgctgagcatcgacggcggcagcatccg 179 Query: 242 cggcctcatcccctccaccatcctcgcctgcctcgagtccaagctccaggagctggacgg 301 ||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct: 180 cggcctcgtcccggccaccatcctcgcctgcctcgaggccaagctccaggagctgggcgg 239 Query: 302 gccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacgagcaccggcgcgct 361 |||||| ||| | ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 240 gccggaggcgaggatcgcggactacttcgatgtgatcgccgggacgagcaccggggcgct 299 Query: 362 ggtcgcgtccatgctggcggc 382 | || |||| ||||||||||| Sbjct: 300 gatcacgtcgatgctggcggc 320
>gb|AY105282.1| Zea mays PCO126203 mRNA sequence Length = 768 Score = 200 bits (101), Expect = 3e-48 Identities = 179/205 (87%) Strand = Plus / Plus Query: 202 agctcatcacggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccacca 261 ||||||||||| | || |||||||| |||||||||||||||||||| ||||| | |||| Sbjct: 173 agctcatcacgatcctgagcatcgatggcggcggcatccgcggccttatcccggcgacca 232 Query: 262 tcctcgcctgcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcgg 321 || | || | ||||||| |||||||||||||||||||||| |||||||| || ||||| | Sbjct: 233 tcattgcgtacctcgaggccaagctccaggagctggacggcccggacgctcggatcgccg 292 Query: 322 actacttcgacgtgatcgccgggacgagcaccggcgcgctggtcgcgtccatgctggcgg 381 |||||||||| ||||| |||||||||||||||||||| ||| ||||||| |||||||||| Sbjct: 293 actacttcgatgtgattgccgggacgagcaccggcgccctgctcgcgtcgatgctggcgg 352 Query: 382 cccccggcgagaacaagcggccgct 406 | || | ||||||||| |||||||| Sbjct: 353 cgccggacgagaacaaccggccgct 377
>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0042J05, complete sequence Length = 150295 Score = 141 bits (71), Expect = 2e-30 Identities = 89/95 (93%) Strand = Plus / Plus Query: 288 caggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 347 |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| Sbjct: 7315 caggagctggacgggccggaggcgaggatcgcggactacttcgacgtgatcgccgggacg 7374 Query: 348 agcaccggcgcgctggtcgcgtccatgctggcggc 382 |||||||| |||||| || |||||||||||||||| Sbjct: 7375 agcaccggggcgctgatcacgtccatgctggcggc 7409 Score = 139 bits (70), Expect = 8e-30 Identities = 100/110 (90%) Strand = Plus / Plus Query: 182 cccgcccccgtcgcaggggcagctcatcacggtgctcagcatcgacggcggcggcatccg 241 |||||| |||| |||||| ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 6844 cccgccgccgtgccaggggaggctcatcaccgtgctgagcatcgacggcggcggcatccg 6903 Query: 242 cggcctcatcccctccaccatcctcgcctgcctcgagtccaagctccagg 291 |||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 6904 cggcctcatcccggccaccatcctcgcctgcctcgaggccaagctccagg 6953 Score = 125 bits (63), Expect = 1e-25 Identities = 87/95 (91%) Strand = Plus / Plus Query: 288 caggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 347 |||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||| Sbjct: 15642 caggagctggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacg 15701 Query: 348 agcaccggcgcgctggtcgcgtccatgctggcggc 382 |||||||| |||||| || |||| ||||||||||| Sbjct: 15702 agcaccggggcgctgatcacgtcgatgctggcggc 15736 Score = 123 bits (62), Expect = 5e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 182 cccgcccccgtcgcaggggcagctcatcacggtgctcagcatcgacggcggcggcatccg 241 |||||| |||| |||||| ||||||||| ||||| ||||||||||||||| ||||||| Sbjct: 14224 cccgccgccgtgccaggggaggctcatcaccgtgctgagcatcgacggcggcagcatccg 14283 Query: 242 cggcctcatcccctccaccatcctcgcctgcctcgagtccaagctccagg 291 ||||||| |||| ||||||||||||||||||||||| |||||||||||| Sbjct: 14284 cggcctcgtcccggccaccatcctcgcctgcctcgaggccaagctccagg 14333
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 141 bits (71), Expect = 2e-30 Identities = 89/95 (93%) Strand = Plus / Plus Query: 288 caggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 347 |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| Sbjct: 22991312 caggagctggacgggccggaggcgaggatcgcggactacttcgacgtgatcgccgggacg 22991371 Query: 348 agcaccggcgcgctggtcgcgtccatgctggcggc 382 |||||||| |||||| || |||||||||||||||| Sbjct: 22991372 agcaccggggcgctgatcacgtccatgctggcggc 22991406 Score = 139 bits (70), Expect = 8e-30 Identities = 100/110 (90%) Strand = Plus / Plus Query: 182 cccgcccccgtcgcaggggcagctcatcacggtgctcagcatcgacggcggcggcatccg 241 |||||| |||| |||||| ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 22990841 cccgccgccgtgccaggggaggctcatcaccgtgctgagcatcgacggcggcggcatccg 22990900 Query: 242 cggcctcatcccctccaccatcctcgcctgcctcgagtccaagctccagg 291 |||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 22990901 cggcctcatcccggccaccatcctcgcctgcctcgaggccaagctccagg 22990950 Score = 125 bits (63), Expect = 1e-25 Identities = 87/95 (91%) Strand = Plus / Plus Query: 288 caggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 347 |||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||| Sbjct: 22999639 caggagctggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacg 22999698 Query: 348 agcaccggcgcgctggtcgcgtccatgctggcggc 382 |||||||| |||||| || |||| ||||||||||| Sbjct: 22999699 agcaccggggcgctgatcacgtcgatgctggcggc 22999733 Score = 123 bits (62), Expect = 5e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 182 cccgcccccgtcgcaggggcagctcatcacggtgctcagcatcgacggcggcggcatccg 241 |||||| |||| |||||| ||||||||| ||||| ||||||||||||||| ||||||| Sbjct: 22998221 cccgccgccgtgccaggggaggctcatcaccgtgctgagcatcgacggcggcagcatccg 22998280 Query: 242 cggcctcatcccctccaccatcctcgcctgcctcgagtccaagctccagg 291 ||||||| |||| ||||||||||||||||||||||| |||||||||||| Sbjct: 22998281 cggcctcgtcccggccaccatcctcgcctgcctcgaggccaagctccagg 22998330
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 141 bits (71), Expect = 2e-30 Identities = 89/95 (93%) Strand = Plus / Plus Query: 288 caggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 347 |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| Sbjct: 23301222 caggagctggacgggccggaggcgaggatcgcggactacttcgacgtgatcgccgggacg 23301281 Query: 348 agcaccggcgcgctggtcgcgtccatgctggcggc 382 |||||||| |||||| || |||||||||||||||| Sbjct: 23301282 agcaccggggcgctgatcacgtccatgctggcggc 23301316 Score = 139 bits (70), Expect = 8e-30 Identities = 100/110 (90%) Strand = Plus / Plus Query: 182 cccgcccccgtcgcaggggcagctcatcacggtgctcagcatcgacggcggcggcatccg 241 |||||| |||| |||||| ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 23300751 cccgccgccgtgccaggggaggctcatcaccgtgctgagcatcgacggcggcggcatccg 23300810 Query: 242 cggcctcatcccctccaccatcctcgcctgcctcgagtccaagctccagg 291 |||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 23300811 cggcctcatcccggccaccatcctcgcctgcctcgaggccaagctccagg 23300860 Score = 125 bits (63), Expect = 1e-25 Identities = 87/95 (91%) Strand = Plus / Plus Query: 288 caggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 347 |||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||| Sbjct: 23309549 caggagctggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacg 23309608 Query: 348 agcaccggcgcgctggtcgcgtccatgctggcggc 382 |||||||| |||||| || |||| ||||||||||| Sbjct: 23309609 agcaccggggcgctgatcacgtcgatgctggcggc 23309643 Score = 123 bits (62), Expect = 5e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 182 cccgcccccgtcgcaggggcagctcatcacggtgctcagcatcgacggcggcggcatccg 241 |||||| |||| |||||| ||||||||| ||||| ||||||||||||||| ||||||| Sbjct: 23308131 cccgccgccgtgccaggggaggctcatcaccgtgctgagcatcgacggcggcagcatccg 23308190 Query: 242 cggcctcatcccctccaccatcctcgcctgcctcgagtccaagctccagg 291 ||||||| |||| ||||||||||||||||||||||| |||||||||||| Sbjct: 23308191 cggcctcgtcccggccaccatcctcgcctgcctcgaggccaagctccagg 23308240
>ref|XM_482944.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1701 Score = 137 bits (69), Expect = 3e-29 Identities = 135/157 (85%) Strand = Plus / Plus Query: 208 tcacggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcg 267 |||| ||||| |||||||||||||||||| |||||||| ||||||| ||||||||||| Sbjct: 328 tcaccgtgctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcg 387 Query: 268 cctgcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactact 327 || |||||||| ||||| ||| |||| ||||| | |||||| | ||||| ||||||| Sbjct: 388 ccagcctcgaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactact 447 Query: 328 tcgacgtgatcgccgggacgagcaccggcgcgctggt 364 ||||||| |||||||||||||||||||||| |||||| Sbjct: 448 tcgacgtaatcgccgggacgagcaccggcgggctggt 484
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 137 bits (69), Expect = 3e-29 Identities = 135/157 (85%) Strand = Plus / Minus Query: 208 tcacggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcg 267 |||| ||||| |||||||||||||||||| |||||||| ||||||| ||||||||||| Sbjct: 23497737 tcaccgtgctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcg 23497678 Query: 268 cctgcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactact 327 || |||||||| ||||| ||| |||| ||||| | |||||| | ||||| ||||||| Sbjct: 23497677 ccagcctcgaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactact 23497618 Query: 328 tcgacgtgatcgccgggacgagcaccggcgcgctggt 364 ||||||| |||||||||||||||||||||| |||||| Sbjct: 23497617 tcgacgtaatcgccgggacgagcaccggcgggctggt 23497581 Score = 113 bits (57), Expect = 5e-22 Identities = 132/157 (84%) Strand = Plus / Minus Query: 208 tcacggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcg 267 |||| ||||| |||||||||||||||||| | |||||| ||||||| ||||||||||| Sbjct: 23487026 tcaccgtgctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcg 23486967 Query: 268 cctgcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactact 327 | | ||| ||| || || |||||||||||||| || || || || |||| |||||| Sbjct: 23486966 cgttcctggaggagaaactgcaggagctggacggccccgaggctcggctcgccaactact 23486907 Query: 328 tcgacgtgatcgccgggacgagcaccggcgcgctggt 364 |||||||||||||||||||||||||||||| |||||| Sbjct: 23486906 tcgacgtgatcgccgggacgagcaccggcgggctggt 23486870 Score = 111 bits (56), Expect = 2e-21 Identities = 149/180 (82%) Strand = Plus / Plus Query: 211 cggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcct 270 ||||||| |||||||||||||||||| | ||||| ||||||| |||||||| || | Sbjct: 17656545 cggtgctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgt 17656604 Query: 271 gcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactacttcg 330 ||| ||| ||||| ||||||||||||||||||| ||| | | ||||||||||||| Sbjct: 17656605 tcctggaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcg 17656664 Query: 331 acgtgatcgccgggacgagcaccggcgcgctggtcgcgtccatgctggcggcccccggcg 390 |||| ||||||||||||||||| |||| |||||| || ||||||| ||||| ||||||| Sbjct: 17656665 acgtcatcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcg 17656724 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 315 atcgcggactacttcgacgtgatcgccgggacgagcaccgg 355 ||||| |||||||||||||| ||||||| ||||||||||| Sbjct: 23541035 atcgctgactacttcgacgtcgtcgccggcacgagcaccgg 23540995 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Minus Query: 219 agcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcct 270 |||||||||||||||||| || | || ||||||| ||||||||||||||| Sbjct: 23541226 agcatcgacggcggcggcgtcagagggatcatcccggccaccatcctcgcct 23541175 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 ccgggacgagcaccggcgcgc 360 ||||||||||||||||||||| Sbjct: 365508 ccgggacgagcaccggcgcgc 365488
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_E05 Length = 126978 Score = 137 bits (69), Expect = 3e-29 Identities = 135/157 (85%) Strand = Plus / Minus Query: 208 tcacggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcg 267 |||| ||||| |||||||||||||||||| |||||||| ||||||| ||||||||||| Sbjct: 89152 tcaccgtgctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcg 89093 Query: 268 cctgcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactact 327 || |||||||| ||||| ||| |||| ||||| | |||||| | ||||| ||||||| Sbjct: 89092 ccagcctcgaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactact 89033 Query: 328 tcgacgtgatcgccgggacgagcaccggcgcgctggt 364 ||||||| |||||||||||||||||||||| |||||| Sbjct: 89032 tcgacgtaatcgccgggacgagcaccggcgggctggt 88996 Score = 113 bits (57), Expect = 5e-22 Identities = 132/157 (84%) Strand = Plus / Minus Query: 208 tcacggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcg 267 |||| ||||| |||||||||||||||||| | |||||| ||||||| ||||||||||| Sbjct: 78441 tcaccgtgctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcg 78382 Query: 268 cctgcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactact 327 | | ||| ||| || || |||||||||||||| || || || || |||| |||||| Sbjct: 78381 cgttcctggaggagaaactgcaggagctggacggccccgaggctcggctcgccaactact 78322 Query: 328 tcgacgtgatcgccgggacgagcaccggcgcgctggt 364 |||||||||||||||||||||||||||||| |||||| Sbjct: 78321 tcgacgtgatcgccgggacgagcaccggcgggctggt 78285
>dbj|AK108679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-B01, full insert sequence Length = 1701 Score = 137 bits (69), Expect = 3e-29 Identities = 135/157 (85%) Strand = Plus / Plus Query: 208 tcacggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcg 267 |||| ||||| |||||||||||||||||| |||||||| ||||||| ||||||||||| Sbjct: 328 tcaccgtgctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcg 387 Query: 268 cctgcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactact 327 || |||||||| ||||| ||| |||| ||||| | |||||| | ||||| ||||||| Sbjct: 388 ccagcctcgaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactact 447 Query: 328 tcgacgtgatcgccgggacgagcaccggcgcgctggt 364 ||||||| |||||||||||||||||||||| |||||| Sbjct: 448 tcgacgtaatcgccgggacgagcaccggcgggctggt 484
>dbj|AK109768.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A03, full insert sequence Length = 1931 Score = 125 bits (63), Expect = 1e-25 Identities = 87/95 (91%) Strand = Plus / Plus Query: 288 caggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacg 347 |||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||| Sbjct: 1611 caggagctggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacg 1670 Query: 348 agcaccggcgcgctggtcgcgtccatgctggcggc 382 |||||||| |||||| || |||| ||||||||||| Sbjct: 1671 agcaccggggcgctgatcacgtcgatgctggcggc 1705 Score = 123 bits (62), Expect = 5e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 182 cccgcccccgtcgcaggggcagctcatcacggtgctcagcatcgacggcggcggcatccg 241 |||||| |||| |||||| ||||||||| ||||| ||||||||||||||| ||||||| Sbjct: 195 cccgccgccgtgccaggggaggctcatcaccgtgctgagcatcgacggcggcagcatccg 254 Query: 242 cggcctcatcccctccaccatcctcgcctgcctcgagtccaagctccagg 291 ||||||| |||| ||||||||||||||||||||||| |||||||||||| Sbjct: 255 cggcctcgtcccggccaccatcctcgcctgcctcgaggccaagctccagg 304
>ref|XM_470838.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1450 Score = 119 bits (60), Expect = 8e-24 Identities = 117/136 (86%) Strand = Plus / Plus Query: 222 atcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcctgcctcgagtcc 281 |||||||||||||||||| | ||||||||||| |||||||||||||| ||||||| || Sbjct: 124 atcgacggcggcggcatcaggggcctcatcccgggcaccatcctcgccttcctcgaggcc 183 Query: 282 aagctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgcc 341 | ||| ||||||||||| || || ||||||||| |||| || ||||||||| |||||| Sbjct: 184 aggctgcaggagctggatggccccgacgcgcgcctcgccgattacttcgactgcatcgcc 243 Query: 342 gggacgagcaccggcg 357 ||||| |||||||||| Sbjct: 244 gggaccagcaccggcg 259
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 119 bits (60), Expect = 8e-24 Identities = 117/136 (86%) Strand = Plus / Plus Query: 222 atcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcctgcctcgagtcc 281 |||||||||||||||||| | ||||||||||| |||||||||||||| ||||||| || Sbjct: 15674992 atcgacggcggcggcatcaggggcctcatcccgggcaccatcctcgccttcctcgaggcc 15675051 Query: 282 aagctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgcc 341 | ||| ||||||||||| || || ||||||||| |||| || ||||||||| |||||| Sbjct: 15675052 aggctgcaggagctggatggccccgacgcgcgcctcgccgattacttcgactgcatcgcc 15675111 Query: 342 gggacgagcaccggcg 357 ||||| |||||||||| Sbjct: 15675112 gggaccagcaccggcg 15675127 Score = 46.1 bits (23), Expect = 0.095 Identities = 47/55 (85%) Strand = Plus / Plus Query: 303 ccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacgagcaccggcg 357 |||||||| ||| ||||||||||||||||| | ||||||| ||| || |||||| Sbjct: 8124240 ccggacgcccgcgtcgcggactacttcgacctcgtcgccggtacgggcgccggcg 8124294
>gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genomic sequence, complete sequence Length = 178748 Score = 119 bits (60), Expect = 8e-24 Identities = 117/136 (86%) Strand = Plus / Plus Query: 222 atcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcctgcctcgagtcc 281 |||||||||||||||||| | ||||||||||| |||||||||||||| ||||||| || Sbjct: 84946 atcgacggcggcggcatcaggggcctcatcccgggcaccatcctcgccttcctcgaggcc 85005 Query: 282 aagctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgcc 341 | ||| ||||||||||| || || ||||||||| |||| || ||||||||| |||||| Sbjct: 85006 aggctgcaggagctggatggccccgacgcgcgcctcgccgattacttcgactgcatcgcc 85065 Query: 342 gggacgagcaccggcg 357 ||||| |||||||||| Sbjct: 85066 gggaccagcaccggcg 85081
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 119 bits (60), Expect = 8e-24 Identities = 117/136 (86%) Strand = Plus / Plus Query: 222 atcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcctgcctcgagtcc 281 |||||||||||||||||| | ||||||||||| |||||||||||||| ||||||| || Sbjct: 15669526 atcgacggcggcggcatcaggggcctcatcccgggcaccatcctcgccttcctcgaggcc 15669585 Query: 282 aagctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgcc 341 | ||| ||||||||||| || || ||||||||| |||| || ||||||||| |||||| Sbjct: 15669586 aggctgcaggagctggatggccccgacgcgcgcctcgccgattacttcgactgcatcgcc 15669645 Query: 342 gggacgagcaccggcg 357 ||||| |||||||||| Sbjct: 15669646 gggaccagcaccggcg 15669661 Score = 46.1 bits (23), Expect = 0.095 Identities = 47/55 (85%) Strand = Plus / Plus Query: 303 ccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacgagcaccggcg 357 |||||||| ||| ||||||||||||||||| | ||||||| ||| || |||||| Sbjct: 8122075 ccggacgcccgcgtcgcggactacttcgacctcgtcgccggtacgggcgccggcg 8122129
>dbj|AK069809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030J03, full insert sequence Length = 1526 Score = 119 bits (60), Expect = 8e-24 Identities = 117/136 (86%) Strand = Plus / Plus Query: 222 atcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcctgcctcgagtcc 281 |||||||||||||||||| | ||||||||||| |||||||||||||| ||||||| || Sbjct: 197 atcgacggcggcggcatcaggggcctcatcccgggcaccatcctcgccttcctcgaggcc 256 Query: 282 aagctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgcc 341 | ||| ||||||||||| || || ||||||||| |||| || ||||||||| |||||| Sbjct: 257 aggctgcaggagctggatggccccgacgcgcgcctcgccgattacttcgactgcatcgcc 316 Query: 342 gggacgagcaccggcg 357 ||||| |||||||||| Sbjct: 317 gggaccagcaccggcg 332
>ref|XM_482940.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1629 Score = 113 bits (57), Expect = 5e-22 Identities = 132/157 (84%) Strand = Plus / Plus Query: 208 tcacggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcg 267 |||| ||||| |||||||||||||||||| | |||||| ||||||| ||||||||||| Sbjct: 266 tcaccgtgctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcg 325 Query: 268 cctgcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactact 327 | | ||| ||| || || |||||||||||||| || || || || |||| |||||| Sbjct: 326 cgttcctggaggagaaactgcaggagctggacggccccgaggctcggctcgccaactact 385 Query: 328 tcgacgtgatcgccgggacgagcaccggcgcgctggt 364 |||||||||||||||||||||||||||||| |||||| Sbjct: 386 tcgacgtgatcgccgggacgagcaccggcgggctggt 422
>dbj|AK101432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038K22, full insert sequence Length = 1629 Score = 113 bits (57), Expect = 5e-22 Identities = 132/157 (84%) Strand = Plus / Plus Query: 208 tcacggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcg 267 |||| ||||| |||||||||||||||||| | |||||| ||||||| ||||||||||| Sbjct: 266 tcaccgtgctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcg 325 Query: 268 cctgcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactact 327 | | ||| ||| || || |||||||||||||| || || || || |||| |||||| Sbjct: 326 cgttcctggaggagaaactgcaggagctggacggccccgaggctcggctcgccaactact 385 Query: 328 tcgacgtgatcgccgggacgagcaccggcgcgctggt 364 |||||||||||||||||||||||||||||| |||||| Sbjct: 386 tcgacgtgatcgccgggacgagcaccggcgggctggt 422
>ref|XM_482084.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1329 Score = 111 bits (56), Expect = 2e-21 Identities = 149/180 (82%) Strand = Plus / Plus Query: 211 cggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcct 270 ||||||| |||||||||||||||||| | ||||| ||||||| |||||||| || | Sbjct: 170 cggtgctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgt 229 Query: 271 gcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactacttcg 330 ||| ||| ||||| ||||||||||||||||||| ||| | | ||||||||||||| Sbjct: 230 tcctggaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcg 289 Query: 331 acgtgatcgccgggacgagcaccggcgcgctggtcgcgtccatgctggcggcccccggcg 390 |||| ||||||||||||||||| |||| |||||| || ||||||| ||||| ||||||| Sbjct: 290 acgtcatcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcg 349
>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0436B06 Length = 148947 Score = 111 bits (56), Expect = 2e-21 Identities = 149/180 (82%) Strand = Plus / Plus Query: 211 cggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcct 270 ||||||| |||||||||||||||||| | ||||| ||||||| |||||||| || | Sbjct: 133195 cggtgctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgt 133254 Query: 271 gcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactacttcg 330 ||| ||| ||||| ||||||||||||||||||| ||| | | ||||||||||||| Sbjct: 133255 tcctggaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcg 133314 Query: 331 acgtgatcgccgggacgagcaccggcgcgctggtcgcgtccatgctggcggcccccggcg 390 |||| ||||||||||||||||| |||| |||||| || ||||||| ||||| ||||||| Sbjct: 133315 acgtcatcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcg 133374
>dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_C03 Length = 118339 Score = 111 bits (56), Expect = 2e-21 Identities = 149/180 (82%) Strand = Plus / Plus Query: 211 cggtgctcagcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcct 270 ||||||| |||||||||||||||||| | ||||| ||||||| |||||||| || | Sbjct: 41934 cggtgctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgt 41993 Query: 271 gcctcgagtccaagctccaggagctggacgggccggacgcgcgcatcgcggactacttcg 330 ||| ||| ||||| ||||||||||||||||||| ||| | | ||||||||||||| Sbjct: 41994 tcctggaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcg 42053 Query: 331 acgtgatcgccgggacgagcaccggcgcgctggtcgcgtccatgctggcggcccccggcg 390 |||| ||||||||||||||||| |||| |||||| || ||||||| ||||| ||||||| Sbjct: 42054 acgtcatcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcg 42113
>ref|XM_482956.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1218 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 219 agcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcctgcctcgag 278 |||||||||||||||||| || | || ||||||| ||||||||||||||| ||| ||| Sbjct: 73 agcatcgacggcggcggcgtcagagggatcatcccggccaccatcctcgccttccttgag 132 Query: 279 tccaagctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatc 338 ||||||| | ||||| || ||||| || | ||||| |||||||||||||| || Sbjct: 133 aaagagctccaaaaactggatggtccggatgctaggatcgctgactacttcgacgtcgtc 192 Query: 339 gccgggacgagcaccgg 355 ||||| ||||||||||| Sbjct: 193 gccggcacgagcaccgg 209
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 283 agctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccg 342 |||||||| ||||||| ||||| || ||| | | || |||||||||||| ||||||| Sbjct: 22405909 agctccagcagctggatgggccagaggcgaggctggccgactacttcgactacatcgccg 22405968 Query: 343 ggacgagcaccggcgcgctg 362 ||||||||||||||| |||| Sbjct: 22405969 ggacgagcaccggcgggctg 22405988 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 221 catcgacggcggcggcatccgcggcctcatccc 253 ||||||||||||||||||||| ||| ||||||| Sbjct: 22451015 catcgacggcggcggcatccgaggcgtcatccc 22451047 Score = 48.1 bits (24), Expect = 0.024 Identities = 66/80 (82%) Strand = Plus / Minus Query: 283 agctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccg 342 |||||||| |||||||||||| || ||| | | || |||||||||||| ||||||| Sbjct: 22361029 agctccagcggctggacgggccagatgcgaggctggccgactacttcgactacatcgccg 22360970 Query: 343 ggacgagcaccggcgcgctg 362 | ||||||||||||| |||| Sbjct: 22360969 gcacgagcaccggcgggctg 22360950 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 210 acggtgctcagcatcgacggcggcggcatccg 241 |||||||| | |||||| |||||||||||||| Sbjct: 22405836 acggtgctgaccatcgatggcggcggcatccg 22405867 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 210 acggtgctcagcatcgacggcggcggcatccg 241 |||||||| | |||||| |||||||||||||| Sbjct: 22361102 acggtgctgaccatcgatggcggcggcatccg 22361071
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 283 agctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccg 342 |||||||| ||||||| ||||| || ||| | | || |||||||||||| ||||||| Sbjct: 22334254 agctccagcagctggatgggccagaggcgaggctggccgactacttcgactacatcgccg 22334313 Query: 343 ggacgagcaccggcgcgctg 362 ||||||||||||||| |||| Sbjct: 22334314 ggacgagcaccggcgggctg 22334333 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 221 catcgacggcggcggcatccgcggcctcatccc 253 ||||||||||||||||||||| ||| ||||||| Sbjct: 22379360 catcgacggcggcggcatccgaggcgtcatccc 22379392 Score = 48.1 bits (24), Expect = 0.024 Identities = 66/80 (82%) Strand = Plus / Minus Query: 283 agctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccg 342 |||||||| |||||||||||| || ||| | | || |||||||||||| ||||||| Sbjct: 22289374 agctccagcggctggacgggccagatgcgaggctggccgactacttcgactacatcgccg 22289315 Query: 343 ggacgagcaccggcgcgctg 362 | ||||||||||||| |||| Sbjct: 22289314 gcacgagcaccggcgggctg 22289295 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 210 acggtgctcagcatcgacggcggcggcatccg 241 |||||||| | |||||| |||||||||||||| Sbjct: 22334181 acggtgctgaccatcgatggcggcggcatccg 22334212 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 210 acggtgctcagcatcgacggcggcggcatccg 241 |||||||| | |||||| |||||||||||||| Sbjct: 22289447 acggtgctgaccatcgatggcggcggcatccg 22289416
>emb|AL732640.4|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa0022K16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183414 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 283 agctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccg 342 |||||||| ||||||| ||||| || ||| | | || |||||||||||| ||||||| Sbjct: 101625 agctccagcagctggatgggccagaggcgaggctggccgactacttcgactacatcgccg 101566 Query: 343 ggacgagcaccggcgcgctg 362 ||||||||||||||| |||| Sbjct: 101565 ggacgagcaccggcgggctg 101546 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Minus Query: 221 catcgacggcggcggcatccgcggcctcatccc 253 ||||||||||||||||||||| ||| ||||||| Sbjct: 56519 catcgacggcggcggcatccgaggcgtcatccc 56487 Score = 48.1 bits (24), Expect = 0.024 Identities = 66/80 (82%) Strand = Plus / Plus Query: 283 agctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccg 342 |||||||| |||||||||||| || ||| | | || |||||||||||| ||||||| Sbjct: 146505 agctccagcggctggacgggccagatgcgaggctggccgactacttcgactacatcgccg 146564 Query: 343 ggacgagcaccggcgcgctg 362 | ||||||||||||| |||| Sbjct: 146565 gcacgagcaccggcgggctg 146584 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 210 acggtgctcagcatcgacggcggcggcatccg 241 |||||||| | |||||| |||||||||||||| Sbjct: 146432 acggtgctgaccatcgatggcggcggcatccg 146463 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 210 acggtgctcagcatcgacggcggcggcatccg 241 |||||||| | |||||| |||||||||||||| Sbjct: 101698 acggtgctgaccatcgatggcggcggcatccg 101667
>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1666_A04 Length = 90097 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Minus Query: 315 atcgcggactacttcgacgtgatcgccgggacgagcaccgg 355 ||||| |||||||||||||| ||||||| ||||||||||| Sbjct: 20810 atcgctgactacttcgacgtcgtcgccggcacgagcaccgg 20770 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Minus Query: 219 agcatcgacggcggcggcatccgcggcctcatcccctccaccatcctcgcct 270 |||||||||||||||||| || | || ||||||| ||||||||||||||| Sbjct: 21001 agcatcgacggcggcggcgtcagagggatcatcccggccaccatcctcgcct 20950
>dbj|AK106375.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D02, full insert sequence Length = 1522 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 221 catcgacggcggcggcatccgcggcctcatccc 253 ||||||||||||||||||||| ||| ||||||| Sbjct: 152 catcgacggcggcggcatccgaggcgtcatccc 184
>emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298_D03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109610 Score = 48.1 bits (24), Expect = 0.024 Identities = 66/80 (82%) Strand = Plus / Plus Query: 283 agctccaggagctggacgggccggacgcgcgcatcgcggactacttcgacgtgatcgccg 342 |||||||| |||||||||||| || ||| | | || |||||||||||| ||||||| Sbjct: 725 agctccagcggctggacgggccagatgcgaggctggccgactacttcgactacatcgccg 784 Query: 343 ggacgagcaccggcgcgctg 362 | ||||||||||||| |||| Sbjct: 785 gcacgagcaccggcgggctg 804 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 210 acggtgctcagcatcgacggcggcggcatccg 241 |||||||| | |||||| |||||||||||||| Sbjct: 652 acggtgctgaccatcgatggcggcggcatccg 683
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 46.1 bits (23), Expect = 0.095 Identities = 47/55 (85%) Strand = Plus / Plus Query: 303 ccggacgcgcgcatcgcggactacttcgacgtgatcgccgggacgagcaccggcg 357 |||||||| ||| ||||||||||||||||| | ||||||| ||| || |||||| Sbjct: 55670 ccggacgcccgcgtcgcggactacttcgacctcgtcgccggtacgggcgccggcg 55724
>ref|XM_479707.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2236 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 ccgggacgagcaccggcgcgc 360 ||||||||||||||||||||| Sbjct: 325 ccgggacgagcaccggcgcgc 305
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 acgggccggacgcgcgcatcg 318 ||||||||||||||||||||| Sbjct: 1319525 acgggccggacgcgcgcatcg 1319505
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 acgggccggacgcgcgcatcg 318 ||||||||||||||||||||| Sbjct: 2142065 acgggccggacgcgcgcatcg 2142085
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 cgagcaccggcgcgctggtcgcgtccatg 374 |||||||||||||| ||||| |||||||| Sbjct: 4355762 cgagcaccggcgcggtggtctcgtccatg 4355790
>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome Length = 1144377 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 278 gtccaagctccaggagctgga 298 ||||||||||||||||||||| Sbjct: 106694 gtccaagctccaggagctgga 106674
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 caccggcgcgctggtcgcgtc 370 ||||||||||||||||||||| Sbjct: 186216 caccggcgcgctggtcgcgtc 186196
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 312 cgcatcgcggactacttcgac 332 ||||||||||||||||||||| Sbjct: 1338728 cgcatcgcggactacttcgac 1338748
>gb|AF223364.1|AF223364 Myxococcus xanthus tRNA/rRNA methyltransferase-like protein gene, partial cds; protein phosphatase 1 (pph1) and mannose-1-phosphate-guanyltransferase-like protein genes, complete cds; and unknown gene Length = 2686 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 cggcggcggcatccgcggcct 247 ||||||||||||||||||||| Sbjct: 2305 cggcggcggcatccgcggcct 2285
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 cacgagcaggagcacgagcag 48 ||||||||||||||||||||| Sbjct: 12549908 cacgagcaggagcacgagcag 12549928
>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster, complete sequence Length = 123580 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 224 cgacggcggcggcatccgcgg 244 ||||||||||||||||||||| Sbjct: 95951 cgacggcggcggcatccgcgg 95931
>dbj|AP004750.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0421H01 Length = 142638 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 cacgagcaggagcacgagcag 48 ||||||||||||||||||||| Sbjct: 123642 cacgagcaggagcacgagcag 123662
>dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652D10 Length = 156744 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 cacgagcaggagcacgagcag 48 ||||||||||||||||||||| Sbjct: 32221 cacgagcaggagcacgagcag 32241
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0450B04 Length = 153268 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 ccgggacgagcaccggcgcgc 360 ||||||||||||||||||||| Sbjct: 75022 ccgggacgagcaccggcgcgc 75002
>dbj|AK119294.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-E03, full insert sequence Length = 2236 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 ccgggacgagcaccggcgcgc 360 ||||||||||||||||||||| Sbjct: 325 ccgggacgagcaccggcgcgc 305
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 ggactacttcgacgtgatcgc 340 ||||||||||||||||||||| Sbjct: 829450 ggactacttcgacgtgatcgc 829430
>ref|XM_465581.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1406 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 catcgacggcggcggcatccgcggcctc 248 ||||| ||||||||||||| |||||||| Sbjct: 88 catcgtcggcggcggcatctgcggcctc 115
>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21, complete sequence Length = 135750 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cacgagcaggagcacgagca 47 |||||||||||||||||||| Sbjct: 68769 cacgagcaggagcacgagca 68750
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gcatcgacggcggcggcatc 239 |||||||||||||||||||| Sbjct: 463258 gcatcgacggcggcggcatc 463277
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 gactacttcgacgtgatcgc 340 |||||||||||||||||||| Sbjct: 2174156 gactacttcgacgtgatcgc 2174137
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 acggcggcggcatccgcggc 245 |||||||||||||||||||| Sbjct: 3210027 acggcggcggcatccgcggc 3210008
>gb|AC113190.8| Homo sapiens chromosome 15, clone RP11-186H10, complete sequence Length = 161765 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 agtgggagggagctaagcta 140 |||||||||||||||||||| Sbjct: 3117 agtgggagggagctaagcta 3136
>gb|AC104236.2| Homo sapiens chromosome 15, clone RP11-24J19, complete sequence Length = 160392 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 agtgggagggagctaagcta 140 |||||||||||||||||||| Sbjct: 102907 agtgggagggagctaagcta 102926
>ref|NM_027208.1| Mus musculus 3-hydroxybutyrate dehydrogenase, type 2 (Bdh2), mRNA Length = 1051 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 cgagtccaagctccaggagctgga 298 ||||||||| |||||||||||||| Sbjct: 213 cgagtccaaactccaggagctgga 236
>gb|BC021461.1| Mus musculus 3-hydroxybutyrate dehydrogenase, type 2, mRNA (cDNA clone IMAGE:5054795), containing frame-shift errors Length = 1191 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 cgagtccaagctccaggagctgga 298 ||||||||| |||||||||||||| Sbjct: 351 cgagtccaaactccaggagctgga 374
>gb|BC036998.1| Mus musculus 3-hydroxybutyrate dehydrogenase, type 2, mRNA (cDNA clone MGC:46989 IMAGE:5041996), complete cds Length = 1051 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 cgagtccaagctccaggagctgga 298 ||||||||| |||||||||||||| Sbjct: 213 cgagtccaaactccaggagctgga 236
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggagctggacgggccggacg 309 |||||||||||||||||||| Sbjct: 92821 ggagctggacgggccggacg 92840
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 acggcggcggcatccgcggc 245 |||||||||||||||||||| Sbjct: 2960121 acggcggcggcatccgcggc 2960140
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cacgagcaggagcacgagca 47 |||||||||||||||||||| Sbjct: 21816360 cacgagcaggagcacgagca 21816341
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 catcgacggcggcggcatccgcggcctc 248 ||||| ||||||||||||| |||||||| Sbjct: 16101905 catcgtcggcggcggcatctgcggcctc 16101932
>dbj|AK208132.1| Mus musculus cDNA, clone:Y2G0110D15, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000029817, based on BLAT search Length = 250 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 cgagtccaagctccaggagctgga 298 ||||||||| |||||||||||||| Sbjct: 52 cgagtccaaactccaggagctgga 75
>dbj|AP004787.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0403C01 Length = 145635 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 catcgacggcggcggcatccgcggcctc 248 ||||| ||||||||||||| |||||||| Sbjct: 100139 catcgtcggcggcggcatctgcggcctc 100166
>dbj|AK110913.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-C04, full insert sequence Length = 1408 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 catcgacggcggcggcatccgcggcctc 248 ||||| ||||||||||||| |||||||| Sbjct: 88 catcgtcggcggcggcatctgcggcctc 115
>ref|NM_209921.1| Eremothecium gossypii AEL292Wp (AEL292W), mRNA Length = 1890 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggagctggacgggccggacg 309 |||||||||||||||||||| Sbjct: 462 ggagctggacgggccggacg 481
>gb|AC007773.1|AC007773 Homo sapiens chromosome 19, BAC 275282 (CIT-B-325L16), complete sequence Length = 180316 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 agtgggagggagctaagcta 140 |||||||||||||||||||| Sbjct: 11392 agtgggagggagctaagcta 11411
>gb|AC104874.11| Mus musculus chromosome 3, clone RP23-453I14, complete sequence Length = 182940 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 cgagtccaagctccaggagctgga 298 ||||||||| |||||||||||||| Sbjct: 122575 cgagtccaaactccaggagctgga 122598
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 tcgcggactacttcgacgtg 335 |||||||||||||||||||| Sbjct: 2627817 tcgcggactacttcgacgtg 2627798
>gb|L38827.1|CFIB14C Cellulomonas fimi ORF gene, 3' end of cds, beta-1, 4-cellobiohydrolase (CbhB) gene, complete cds Length = 3776 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcgacgtgatcgccgggacg 347 |||||||||||||||||||| Sbjct: 2887 tcgacgtgatcgccgggacg 2868 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,662,187 Number of Sequences: 3902068 Number of extensions: 2662187 Number of successful extensions: 63614 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61944 Number of HSP's gapped (non-prelim): 1654 length of query: 435 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 413 effective length of database: 17,147,199,772 effective search space: 7081793505836 effective search space used: 7081793505836 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
