ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09b05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ290421.1|HVU290421 Hordeum vulgare mRNA for BAX inhibitor 1 (pBI-1 gene) Length = 744 Score = 420 bits (212), Expect = e-114 Identities = 231/239 (96%) Strand = Plus / Plus Query: 116 atggacgccttctactcgacctcgtcggcngcggcaagcggctggggccacgactccctc 175 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 1 atggacgccttctactcgacctcgtcggcggcggcgagcggctggggccacgactccctc 60 Query: 176 angaacttccgccagatctcccccgccgtgcagtcccacctcaggctcgtttacctgact 235 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 61 aagaacttccgccagatctcccccgccgtgcagtcccacctcaagctcgtttacctgact 120 Query: 236 ctntgctttgcactggcctcatctgccgtgggtgcttacctacncattgccctgaacatc 295 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 121 ctatgctttgcactggcctcatctgccgtgggtgcttacctacacattgccctgaacatc 180 Query: 296 ggcgggatgctaacnatgctcgcttgtgtcggaactatcgcctggatgttctcggtgcc 354 ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ggcgggatgctgacaatgctcgcttgtgtcggaactatcgcctggatgttctcggtgcc 239
>emb|AJ278816.1|HVU278816 Hordeum vulgare partial mRNA for putative BAX inhibitor 1 (pBI-1 gene) Length = 438 Score = 385 bits (194), Expect = e-104 Identities = 213/221 (96%) Strand = Plus / Plus Query: 134 acctcgtcggcngcggcaagcggctggggccacgactccctcangaacttccgccagatc 193 ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1 acctcgtcggcggcggcgagcggctggggccacgactccctcaagaacttccgccagatc 60 Query: 194 tcccccgccgtgcagtcccacctcaggctcgtttacctgactctntgctttgcactggcc 253 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 61 tcccccgccgtgcagtcccacctcaagctcgtttacctgactctatgctttgcactggcc 120 Query: 254 tcatctgccgtgggtgcttacctacncattgccctgaacatcggcgggatgctaacnatg 313 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| Sbjct: 121 tcatctgccgtgggtgcttacctacacattgccctgaacatcggcgggatgctgacaatg 180 Query: 314 ctcgcttgtgtcggaactatcgcctggatgttctcggtgcc 354 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcgcttgtgtcggaactatcgcctggatgttctcggtgcc 221
>ref|XM_463954.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1071 Score = 155 bits (78), Expect = 1e-34 Identities = 204/249 (81%), Gaps = 9/249 (3%) Strand = Plus / Plus Query: 115 gatggacgccttctactcgacctcgtcggcn---------gcggcaagcggctggggcca 165 |||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 28 gatggacgccttctactcgacctcgtcggcgtacggagcggcggcgagcggctggggcta 87 Query: 166 cgactccctcangaacttccgccagatctcccccgccgtgcagtcccacctcaggctcgt 225 |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 88 cgactcgctgaagaacttccgccagatctcccccgccgtccagtcccacctcaagctcgt 147 Query: 226 ttacctgactctntgctttgcactggcctcatctgccgtgggtgcttacctacncattgc 285 ||||||||| || ||| | || ||||| | || || ||||| || ||||| | | | || Sbjct: 148 ttacctgacactatgcgtcgccctggctgcgtcggcggtgggcgcatacctgcacgtcgc 207 Query: 286 cctgaacatcggcgggatgctaacnatgctcgcttgtgtcggaactatcgcctggatgtt 345 | ||||||||||||||||| | || ||||||| || || || | ||||||||| |||| Sbjct: 208 cttgaacatcggcgggatgttgactatgctcgggtgcgtggggagcatcgcctggttgtt 267 Query: 346 ctcggtgcc 354 ||||||||| Sbjct: 268 ctcggtgcc 276
>ref|XM_507433.1| PREDICTED Oryza sativa (japonica cultivar-group), P0482F12.1-1 mRNA Length = 1168 Score = 155 bits (78), Expect = 1e-34 Identities = 204/249 (81%), Gaps = 9/249 (3%) Strand = Plus / Plus Query: 115 gatggacgccttctactcgacctcgtcggcn---------gcggcaagcggctggggcca 165 |||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 139 gatggacgccttctactcgacctcgtcggcgtacggagcggcggcgagcggctggggcta 198 Query: 166 cgactccctcangaacttccgccagatctcccccgccgtgcagtcccacctcaggctcgt 225 |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 199 cgactcgctgaagaacttccgccagatctcccccgccgtccagtcccacctcaagctcgt 258 Query: 226 ttacctgactctntgctttgcactggcctcatctgccgtgggtgcttacctacncattgc 285 ||||||||| || ||| | || ||||| | || || ||||| || ||||| | | | || Sbjct: 259 ttacctgacactatgcgtcgccctggctgcgtcggcggtgggcgcatacctgcacgtcgc 318 Query: 286 cctgaacatcggcgggatgctaacnatgctcgcttgtgtcggaactatcgcctggatgtt 345 | ||||||||||||||||| | || ||||||| || || || | ||||||||| |||| Sbjct: 319 cttgaacatcggcgggatgttgactatgctcgggtgcgtggggagcatcgcctggttgtt 378 Query: 346 ctcggtgcc 354 ||||||||| Sbjct: 379 ctcggtgcc 387
>ref|XM_506699.2| PREDICTED Oryza sativa (japonica cultivar-group), P0482F12.1-1 mRNA Length = 1193 Score = 155 bits (78), Expect = 1e-34 Identities = 204/249 (81%), Gaps = 9/249 (3%) Strand = Plus / Plus Query: 115 gatggacgccttctactcgacctcgtcggcn---------gcggcaagcggctggggcca 165 |||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 150 gatggacgccttctactcgacctcgtcggcgtacggagcggcggcgagcggctggggcta 209 Query: 166 cgactccctcangaacttccgccagatctcccccgccgtgcagtcccacctcaggctcgt 225 |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 210 cgactcgctgaagaacttccgccagatctcccccgccgtccagtcccacctcaagctcgt 269 Query: 226 ttacctgactctntgctttgcactggcctcatctgccgtgggtgcttacctacncattgc 285 ||||||||| || ||| | || ||||| | || || ||||| || ||||| | | | || Sbjct: 270 ttacctgacactatgcgtcgccctggctgcgtcggcggtgggcgcatacctgcacgtcgc 329 Query: 286 cctgaacatcggcgggatgctaacnatgctcgcttgtgtcggaactatcgcctggatgtt 345 | ||||||||||||||||| | || ||||||| || || || | ||||||||| |||| Sbjct: 330 cttgaacatcggcgggatgttgactatgctcgggtgcgtggggagcatcgcctggttgtt 389 Query: 346 ctcggtgcc 354 ||||||||| Sbjct: 390 ctcggtgcc 398
>dbj|AB025926.3| Oryza sativa BI-1 mRNA for Bax inhibitor-1, complete cds Length = 1181 Score = 155 bits (78), Expect = 1e-34 Identities = 204/249 (81%), Gaps = 9/249 (3%) Strand = Plus / Plus Query: 115 gatggacgccttctactcgacctcgtcggcn---------gcggcaagcggctggggcca 165 |||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 125 gatggacgccttctactcgacctcgtcggcgtacggagcggcggcgagcggctggggcta 184 Query: 166 cgactccctcangaacttccgccagatctcccccgccgtgcagtcccacctcaggctcgt 225 |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 185 cgactcgctgaagaacttccgccagatctcccccgccgtccagtcccacctcaagctcgt 244 Query: 226 ttacctgactctntgctttgcactggcctcatctgccgtgggtgcttacctacncattgc 285 ||||||||| || ||| | || ||||| | || || ||||| || ||||| | | | || Sbjct: 245 ttacctgacactatgcgtcgccctggctgcgtcggcggtgggcgcatacctgcacgtcgc 304 Query: 286 cctgaacatcggcgggatgctaacnatgctcgcttgtgtcggaactatcgcctggatgtt 345 | ||||||||||||||||| | || ||||||| || || || | ||||||||| |||| Sbjct: 305 cttgaacatcggcgggatgttgactatgctcgggtgcgtggggagcatcgcctggttgtt 364 Query: 346 ctcggtgcc 354 ||||||||| Sbjct: 365 ctcggtgcc 373
>dbj|AK101060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022C21, full insert sequence Length = 1193 Score = 155 bits (78), Expect = 1e-34 Identities = 204/249 (81%), Gaps = 9/249 (3%) Strand = Plus / Plus Query: 115 gatggacgccttctactcgacctcgtcggcn---------gcggcaagcggctggggcca 165 |||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 150 gatggacgccttctactcgacctcgtcggcgtacggagcggcggcgagcggctggggcta 209 Query: 166 cgactccctcangaacttccgccagatctcccccgccgtgcagtcccacctcaggctcgt 225 |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 210 cgactcgctgaagaacttccgccagatctcccccgccgtccagtcccacctcaagctcgt 269 Query: 226 ttacctgactctntgctttgcactggcctcatctgccgtgggtgcttacctacncattgc 285 ||||||||| || ||| | || ||||| | || || ||||| || ||||| | | | || Sbjct: 270 ttacctgacactatgcgtcgccctggctgcgtcggcggtgggcgcatacctgcacgtcgc 329 Query: 286 cctgaacatcggcgggatgctaacnatgctcgcttgtgtcggaactatcgcctggatgtt 345 | ||||||||||||||||| | || ||||||| || || || | ||||||||| |||| Sbjct: 330 cttgaacatcggcgggatgttgactatgctcgggtgcgtggggagcatcgcctggttgtt 389 Query: 346 ctcggtgcc 354 ||||||||| Sbjct: 390 ctcggtgcc 398
>dbj|AK061953.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F03, full insert sequence Length = 1168 Score = 155 bits (78), Expect = 1e-34 Identities = 204/249 (81%), Gaps = 9/249 (3%) Strand = Plus / Plus Query: 115 gatggacgccttctactcgacctcgtcggcn---------gcggcaagcggctggggcca 165 |||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 139 gatggacgccttctactcgacctcgtcggcgtacggagcggcggcgagcggctggggcta 198 Query: 166 cgactccctcangaacttccgccagatctcccccgccgtgcagtcccacctcaggctcgt 225 |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 199 cgactcgctgaagaacttccgccagatctcccccgccgtccagtcccacctcaagctcgt 258 Query: 226 ttacctgactctntgctttgcactggcctcatctgccgtgggtgcttacctacncattgc 285 ||||||||| || ||| | || ||||| | || || ||||| || ||||| | | | || Sbjct: 259 ttacctgacactatgcgtcgccctggctgcgtcggcggtgggcgcatacctgcacgtcgc 318 Query: 286 cctgaacatcggcgggatgctaacnatgctcgcttgtgtcggaactatcgcctggatgtt 345 | ||||||||||||||||| | || ||||||| || || || | ||||||||| |||| Sbjct: 319 cttgaacatcggcgggatgttgactatgctcgggtgcgtggggagcatcgcctggttgtt 378 Query: 346 ctcggtgcc 354 ||||||||| Sbjct: 379 ctcggtgcc 387
>dbj|AK061564.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E05, full insert sequence Length = 1071 Score = 155 bits (78), Expect = 1e-34 Identities = 204/249 (81%), Gaps = 9/249 (3%) Strand = Plus / Plus Query: 115 gatggacgccttctactcgacctcgtcggcn---------gcggcaagcggctggggcca 165 |||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 28 gatggacgccttctactcgacctcgtcggcgtacggagcggcggcgagcggctggggcta 87 Query: 166 cgactccctcangaacttccgccagatctcccccgccgtgcagtcccacctcaggctcgt 225 |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 88 cgactcgctgaagaacttccgccagatctcccccgccgtccagtcccacctcaagctcgt 147 Query: 226 ttacctgactctntgctttgcactggcctcatctgccgtgggtgcttacctacncattgc 285 ||||||||| || ||| | || ||||| | || || ||||| || ||||| | | | || Sbjct: 148 ttacctgacactatgcgtcgccctggctgcgtcggcggtgggcgcatacctgcacgtcgc 207 Query: 286 cctgaacatcggcgggatgctaacnatgctcgcttgtgtcggaactatcgcctggatgtt 345 | ||||||||||||||||| | || ||||||| || || || | ||||||||| |||| Sbjct: 208 cttgaacatcggcgggatgttgactatgctcgggtgcgtggggagcatcgcctggttgtt 267 Query: 346 ctcggtgcc 354 ||||||||| Sbjct: 268 ctcggtgcc 276
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 115 bits (58), Expect = 1e-22 Identities = 103/120 (85%), Gaps = 9/120 (7%) Strand = Plus / Plus Query: 115 gatggacgccttctactcgacctcgtcggcn---------gcggcaagcggctggggcca 165 |||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 1327070 gatggacgccttctactcgacctcgtcggcgtacggagcggcggcgagcggctggggcta 1327129 Query: 166 cgactccctcangaacttccgccagatctcccccgccgtgcagtcccacctcaggctcgt 225 |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 1327130 cgactcgctgaagaacttccgccagatctcccccgccgtccagtcccacctcaagctcgt 1327189 Score = 48.1 bits (24), Expect = 0.019 Identities = 56/67 (83%) Strand = Plus / Plus Query: 288 tgaacatcggcgggatgctaacnatgctcgcttgtgtcggaactatcgcctggatgttct 347 ||||||||||||||||| | || ||||||| || || || | ||||||||| |||||| Sbjct: 1328124 tgaacatcggcgggatgttgactatgctcgggtgcgtggggagcatcgcctggttgttct 1328183 Query: 348 cggtgcc 354 ||||||| Sbjct: 1328184 cggtgcc 1328190 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 cgacgcgcaggcgcaggcgcaggg 115 |||||||||| ||||||||||||| Sbjct: 34595540 cgacgcgcagtcgcaggcgcaggg 34595563
>dbj|AP005311.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0482F12 Length = 147735 Score = 115 bits (58), Expect = 1e-22 Identities = 103/120 (85%), Gaps = 9/120 (7%) Strand = Plus / Plus Query: 115 gatggacgccttctactcgacctcgtcggcn---------gcggcaagcggctggggcca 165 |||||||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct: 8342 gatggacgccttctactcgacctcgtcggcgtacggagcggcggcgagcggctggggcta 8401 Query: 166 cgactccctcangaacttccgccagatctcccccgccgtgcagtcccacctcaggctcgt 225 |||||| || | ||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 8402 cgactcgctgaagaacttccgccagatctcccccgccgtccagtcccacctcaagctcgt 8461 Score = 48.1 bits (24), Expect = 0.019 Identities = 56/67 (83%) Strand = Plus / Plus Query: 288 tgaacatcggcgggatgctaacnatgctcgcttgtgtcggaactatcgcctggatgttct 347 ||||||||||||||||| | || ||||||| || || || | ||||||||| |||||| Sbjct: 9396 tgaacatcggcgggatgttgactatgctcgggtgcgtggggagcatcgcctggttgttct 9455 Query: 348 cggtgcc 354 ||||||| Sbjct: 9456 cggtgcc 9462
>gb|AY105656.1| Zea mays PCO153521 mRNA sequence Length = 1096 Score = 99.6 bits (50), Expect = 6e-18 Identities = 154/190 (81%) Strand = Plus / Plus Query: 165 acgactccctcangaacttccgccagatctcccccgccgtgcagtcccacctcaggctcg 224 ||||||| |||| |||||||||||||||| |||||||||| ||| ||||||||| ||||| Sbjct: 139 acgactcgctcaagaacttccgccagatcacccccgccgtccagacccacctcaagctcg 198 Query: 225 tttacctgactctntgctttgcactggcctcatctgccgtgggtgcttacctacncattg 284 | ||||| || || ||| || |||||||| || || ||||| |||||||| | | | | Sbjct: 199 tctacctcaccctgtgcgcggcgctggcctcgtcggcggtgggcgcttacctgcacgtgg 258 Query: 285 ccctgaacatcggcgggatgctaacnatgctcgcttgtgtcggaactatcgcctggatgt 344 | |||||||||||| | ||| || ||||||| ||| ||||| | ||||||||| | | Sbjct: 259 tctggaacatcggcggtacgctgacaatgctcggttgcgtcggcagcatcgcctggctct 318 Query: 345 tctcggtgcc 354 |||||||||| Sbjct: 319 tctcggtgcc 328
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 gcgcaggcgcaggcgcaggga 116 ||||||||||||||||||||| Sbjct: 2163124 gcgcaggcgcaggcgcaggga 2163144
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete sequence Length = 145590 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 gcgcaggcgcaggcgcaggga 116 ||||||||||||||||||||| Sbjct: 42304 gcgcaggcgcaggcgcaggga 42284
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 gcgcaggcgcaggcgcaggga 116 ||||||||||||||||||||| Sbjct: 22447057 gcgcaggcgcaggcgcaggga 22447037 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 33879318 cgcgcaggcgcaggcgcagg 33879337
>gb|AC099735.47| Mus musculus chromosome 1, clone RP23-218I9, complete sequence Length = 207768 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 cgcgcaggcgcaggcgcaggg 115 ||||||||||||||||||||| Sbjct: 106809 cgcgcaggcgcaggcgcaggg 106789
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 acgcgcaggcgcaggcgcagg 114 ||||||||||||||||||||| Sbjct: 1646596 acgcgcaggcgcaggcgcagg 1646616
>gb|AC159966.5| Mus musculus chromosome 1, clone RP23-287P12, complete sequence Length = 208142 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 cgcgcaggcgcaggcgcaggg 115 ||||||||||||||||||||| Sbjct: 14674 cgcgcaggcgcaggcgcaggg 14654
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 96 gcgcaggcgcaggcgcaggga 116 ||||||||||||||||||||| Sbjct: 22440086 gcgcaggcgcaggcgcaggga 22440066 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 33969790 cgcgcaggcgcaggcgcagg 33969809
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 ttcgacgcgcaggcgcaggcg 110 ||||||||||||||||||||| Sbjct: 1155758 ttcgacgcgcaggcgcaggcg 1155738
>ref|XM_550608.1| Oryza sativa (japonica cultivar-group), mRNA Length = 531 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 111 cgcgcaggcgcaggcgcagg 130
>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940117D9, complete sequence Length = 143368 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 acgcgcaggcgcaggcgcag 113 |||||||||||||||||||| Sbjct: 134511 acgcgcaggcgcaggcgcag 134530
>ref|NM_001003352.1| Canis familiaris neurofilament, heavy polypeptide 200kDa (NEFH), mRNA Length = 4099 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 808 cgcgcaggcgcaggcgcagg 827
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcgacgcgcaggcgcaggcg 110 |||||||||||||||||||| Sbjct: 1062072 tcgacgcgcaggcgcaggcg 1062091
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 103037 cgcgcaggcgcaggcgcagg 103056
>gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0087D01, complete sequence Length = 83225 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcgcaggcgcaggcgcaggg 115 |||||||||||||||||||| Sbjct: 13502 gcgcaggcgcaggcgcaggg 13521
>gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0073M15, complete sequence Length = 143071 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcgcaggcgcaggcgcaggg 115 |||||||||||||||||||| Sbjct: 92401 gcgcaggcgcaggcgcaggg 92420
>gb|AC116573.7| Mus musculus BAC clone RP23-114E15 from chromosome 6, complete sequence Length = 211910 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gcctggatgttctcggtgcc 354 |||||||||||||||||||| Sbjct: 137122 gcctggatgttctcggtgcc 137103
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 2205320 cgcgcaggcgcaggcgcagg 2205339
>gb|AC139172.2| Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence Length = 27024 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 13520 cgcgcaggcgcaggcgcagg 13539
>gb|AF274858.3| Homo sapiens chromosome X clone RP11-54I20, RP11-66N11 map q28, complete sequence Length = 191983 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 158715 cgcgcaggcgcaggcgcagg 158734
>gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, complete sequence Length = 175472 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 ttgcactggcctcatctgcc 262 |||||||||||||||||||| Sbjct: 163195 ttgcactggcctcatctgcc 163176
>dbj|AK028630.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732420K15 product:unclassifiable, full insert sequence Length = 2826 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 439 cgcgcaggcgcaggcgcagg 420
>dbj|AK082339.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230039F11 product:unclassifiable, full insert sequence Length = 2240 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gcctggatgttctcggtgcc 354 |||||||||||||||||||| Sbjct: 123 gcctggatgttctcggtgcc 104
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gcgcaggcgcaggcgcaggg 115 |||||||||||||||||||| Sbjct: 16549919 gcgcaggcgcaggcgcaggg 16549900
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 1782821 cgcgcaggcgcaggcgcagg 1782840
>gb|AF346625.1| Canis familiaris heavy neurofilament protein (NFH) mRNA, NFH-C allele, complete cds Length = 4099 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 808 cgcgcaggcgcaggcgcagg 827
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 887424 cgcgcaggcgcaggcgcagg 887443
>gb|AC011648.12| Homo sapiens chromosome 15, clone RP11-15F13, complete sequence Length = 107336 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ttgcactggcctcatctgcc 262 |||||||||||||||||||| Sbjct: 93303 ttgcactggcctcatctgcc 93322
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 107970 cgcgcaggcgcaggcgcagg 107989
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1520_C09 Length = 145553 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 cgacgcgcaggcgcaggcgcaggg 115 |||||||||| ||||||||||||| Sbjct: 106480 cgacgcgcagtcgcaggcgcaggg 106503
>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G06 Length = 122580 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 cgacgcgcaggcgcaggcgcaggg 115 |||||||||| ||||||||||||| Sbjct: 62155 cgacgcgcagtcgcaggcgcaggg 62178
>dbj|AK120829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019H02, full insert sequence Length = 2844 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcgcaggcgcaggcgcaggg 115 |||||||||||||||||||| Sbjct: 261 gcgcaggcgcaggcgcaggg 280
>dbj|AK110290.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-F11, full insert sequence Length = 2399 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcgacgcgcaggcgcaggcg 110 |||||||||||||||||||| Sbjct: 212 tcgacgcgcaggcgcaggcg 231
>gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complete sequence Length = 211512 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 107427 cgcgcaggcgcaggcgcagg 107408
>gb|AY107681.1| Zea mays PCO116018 mRNA sequence Length = 978 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 191 atctcccccgccgtgcagtcccacctca 218 ||||| ||||| |||||||||||||||| Sbjct: 153 atctcacccgctgtgcagtcccacctca 180
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 acgcgcaggcgcaggcgcag 113 |||||||||||||||||||| Sbjct: 1861708 acgcgcaggcgcaggcgcag 1861727
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 cgcgcaggcgcaggcgcagg 114 |||||||||||||||||||| Sbjct: 3301031 cgcgcaggcgcaggcgcagg 3301012
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 gcgcaggcgcaggcgcaggg 115 |||||||||||||||||||| Sbjct: 16503152 gcgcaggcgcaggcgcaggg 16503133
>emb|AL831812.5|CNS08CAP Oryza sativa chromosome 12, . BAC OSJNBa0054H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155947 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcgcaggcgcaggcgcaggg 115 |||||||||||||||||||| Sbjct: 23871 gcgcaggcgcaggcgcaggg 23890
>emb|AL713948.4|CNS07YPR Oryza sativa chromosome 12, . BAC OJ1008_A01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129944 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 gcgcaggcgcaggcgcaggg 115 |||||||||||||||||||| Sbjct: 120847 gcgcaggcgcaggcgcaggg 120866
>emb|AL672076.10| Mouse DNA sequence from clone RP23-161N17 on chromosome 4, complete sequence Length = 208396 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 acgcgcaggcgcaggcgcag 113 |||||||||||||||||||| Sbjct: 137949 acgcgcaggcgcaggcgcag 137968 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,726,666 Number of Sequences: 3902068 Number of extensions: 1726666 Number of successful extensions: 36398 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35692 Number of HSP's gapped (non-prelim): 687 length of query: 354 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 332 effective length of database: 17,147,199,772 effective search space: 5692870324304 effective search space used: 5692870324304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
