ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09b02 |
|---|---|
| Clone Library Name | barley_pub |
>TYRP_SHIFL (P0AAD5) Tyrosine-specific transport protein (Tyrosine permease)| Length = 403 Score = 37.7 bits (86), Expect = 0.014 Identities = 17/55 (30%), Positives = 32/55 (58%) Frame = +3 Query: 216 SAFHNVTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHEMVP 380 S F +GAG+L++P A + +G+ + +LI W + YT ++E+++ VP Sbjct: 8 SVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP 62
>TYRP_ECOLI (P0AAD4) Tyrosine-specific transport protein (Tyrosine permease)| Length = 403 Score = 37.7 bits (86), Expect = 0.014 Identities = 17/55 (30%), Positives = 32/55 (58%) Frame = +3 Query: 216 SAFHNVTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHEMVP 380 S F +GAG+L++P A + +G+ + +LI W + YT ++E+++ VP Sbjct: 8 SVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP 62
>AVT1_YEAST (P47082) Vacuolar amino acid transporter 1| Length = 602 Score = 34.3 bits (77), Expect = 0.15 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = +3 Query: 222 FHNVTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHEMVPGKRFDRY 401 F+++ +G G+L+LP + GW G+ +L I + T T + + P Y Sbjct: 215 FNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDTDP--TLISY 272 Query: 402 HELGQHAFG 428 +LG AFG Sbjct: 273 ADLGYAAFG 281
>Y389_CLOPE (P30818) Putative amino acid transporter CPE0389| Length = 481 Score = 33.5 bits (75), Expect = 0.26 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Frame = +3 Query: 231 VTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHEMVPGKRFD----- 395 ++A +G GV +LP M++ ++ISW+IT +W + ++ R D Sbjct: 17 ISAMLGGGVYNLPQNMAQ---SASAGAILISWIITGIGIWFIANTFRILAAARPDATTGI 73 Query: 396 -RYHELGQHAFGDXLGLW 446 Y ELG F L W Sbjct: 74 YTYGELGFGKFTGFLMAW 91
>AVT6_YEAST (P40074) Vacuolar amino acid transporter 6| Length = 448 Score = 32.7 bits (73), Expect = 0.44 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = +3 Query: 246 GAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHEMVPGKR 389 GAG+L++P+A G PG+ ++++ + +L+ + + VP R Sbjct: 18 GAGILAMPYAFKPFGLIPGVIMIVLCGACAMQSLFIQARVAKYVPQGR 65
>AVT5_YEAST (P38176) Vacuolar amino acid transporter 5| Length = 509 Score = 32.3 bits (72), Expect = 0.57 Identities = 18/57 (31%), Positives = 27/57 (47%) Frame = +3 Query: 246 GAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHEMVPGKRFDRYHELGQ 416 GAGVL++PFA G PG+ L + +L L + + VP + +L Q Sbjct: 68 GAGVLAMPFAFKPFGLMPGLITLTFCGICSLCGLLLQTRIAKYVPKSENASFAKLTQ 124
>TYRPB_HAEIN (P44747) Tyrosine-specific transport protein 2 (Tyrosine permease| 2) Length = 406 Score = 32.3 bits (72), Expect = 0.57 Identities = 12/43 (27%), Positives = 28/43 (65%) Frame = +3 Query: 243 VGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHE 371 +GAG+L++P + +G+G + +L+ W + +Y+ VE+++ Sbjct: 18 IGAGMLAMPLTSAGMGFGYTLLLLVGLWALLVYSGLLFVEVYQ 60
>S36A1_HUMAN (Q7Z2H8) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 476 Score = 32.0 bits (71), Expect = 0.74 Identities = 14/57 (24%), Positives = 29/57 (50%) Frame = +3 Query: 192 SRNAXWWYSAFHNVTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVE 362 S + W+ + H + +G G+L LP A+ G G L+I ++ ++ + +V+ Sbjct: 44 SNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVK 100
>Y460_MYCPN (P75323) Hypothetical protein MG322 homolog (H08_orf565)| Length = 565 Score = 31.2 bits (69), Expect = 1.3 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Frame = +3 Query: 105 QAAENVDPPAKDVRTDEQKKIDDWLPITSSRNAXWWYSAFHNVTAXVGAGVLSL---PFA 275 Q++ V K + D K+ LP+ + N + Y FH+++A AG+ L FA Sbjct: 199 QSSGKVSNQLKALIVDSTKR----LPVVHNLNLAFQYGFFHSLSAVNNAGIDLLGANSFA 254 Query: 276 MSELGWGPGIAVLIISWVI 332 WG I L IS +I Sbjct: 255 PYRTNWGIVIQWLAISQII 273
>S38A3_RAT (Q9JHZ9) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = +3 Query: 216 SAFHNVTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHEMVPGK--- 386 S F+ A +G+G+L L +AM+ G +++ +++T L +H ++ Sbjct: 70 SVFNLSNAIMGSGILGLAYAMANTG------IILFLFLLTAVALLSSYSIHLLLKSSGIV 123 Query: 387 RFDRYHELGQHAFG 428 Y +LG AFG Sbjct: 124 GIRAYEQLGYRAFG 137
>S38A3_HUMAN (Q99624) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) Length = 504 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = +3 Query: 216 SAFHNVTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHEMVPGK--- 386 S F+ A +G+G+L L +AM+ G +++ +++T L +H ++ Sbjct: 71 SVFNLSNAIMGSGILGLAYAMANTG------IILFLFLLTAVALLSSYSIHLLLKSSGVV 124 Query: 387 RFDRYHELGQHAFG 428 Y +LG AFG Sbjct: 125 GIRAYEQLGYRAFG 138
>S38A3_MOUSE (Q9DCP2) System N amino acid transporter 1 (SN1) (N-system amino| acid transporter 1) (Solute carrier family 38 member 3) (mNAT) Length = 505 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = +3 Query: 216 SAFHNVTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHEMVPGK--- 386 S F+ A +G+G+L L +AM+ G +++ +++T L +H ++ Sbjct: 70 SVFNLSNAIMGSGILGLAYAMANTG------IILFLFLLTAVALLSSYSIHLLLKSSGIV 123 Query: 387 RFDRYHELGQHAFG 428 Y +LG AFG Sbjct: 124 GIRAYEQLGYRAFG 137
>TYRPA_HAEIN (P44727) Tyrosine-specific transport protein 1 (Tyrosine permease| 1) Length = 400 Score = 31.2 bits (69), Expect = 1.3 Identities = 11/43 (25%), Positives = 27/43 (62%) Frame = +3 Query: 243 VGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHE 371 +GAG+L++P + +G+G + +L+ W + ++ VE+++ Sbjct: 16 IGAGMLAMPLTSAGIGFGFTLVLLLGLWALLTFSALLFVELYQ 58
>NORM_VIBCH (Q9KRU4) Multidrug resistance protein norM (Na(+)/drug antiporter)| (Multidrug-efflux transporter) Length = 457 Score = 29.6 bits (65), Expect = 3.7 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +3 Query: 270 FAMSELGW-GPGIAVLIISWVITLYTLWQMVEMHEMVPGKRFDRYHE 407 F ELG G G+A I+ W++ L L+ +V + K F+ +H+ Sbjct: 182 FGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHK 228
>CSTA_BACSU (P94532) Carbon starvation protein A homolog| Length = 598 Score = 29.3 bits (64), Expect = 4.8 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +3 Query: 210 WYSAFHNVTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVI 332 W S H+ A AG L P ++ G+ PG+ L+I VI Sbjct: 55 WVSFGHHFAAIAAAGPLVGPILAAQFGYLPGLLWLLIGAVI 95
>S36A1_RAT (Q924A5) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) (Lysosomal amino acid transporter 1) (LYAAT-1) (Neutral amino acid/proton symporter) Length = 475 Score = 29.3 bits (64), Expect = 4.8 Identities = 12/52 (23%), Positives = 27/52 (51%) Frame = +3 Query: 207 WWYSAFHNVTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVE 362 W+ + H + +G G+L LP A+ G G L++ ++ ++ + +V+ Sbjct: 48 WFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVK 99
>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 475 Score = 29.3 bits (64), Expect = 4.8 Identities = 12/52 (23%), Positives = 27/52 (51%) Frame = +3 Query: 207 WWYSAFHNVTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVE 362 W+ + H + +G G+L LP A+ G G L++ ++ ++ + +V+ Sbjct: 48 WFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVK 99
>MTR_NEUCR (P38680) N amino acid transport system protein (Methyltryptophan| resistance protein) Length = 470 Score = 28.9 bits (63), Expect = 6.3 Identities = 18/66 (27%), Positives = 31/66 (46%) Frame = +3 Query: 231 VTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVEMHEMVPGKRFDRYHEL 410 + + G LSLP A + LG PG+ + + +I +YT + + P Y ++ Sbjct: 63 IVEAIALGSLSLPGAFATLGMVPGVILSVGMGLICIYTAHVIGQTKLKHP--EIAHYADV 120 Query: 411 GQHAFG 428 G+ FG Sbjct: 121 GRVMFG 126
>TUTB_ENTAG (Q47825) Tyrosine permease| Length = 416 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = +3 Query: 231 VTAXVGAGVLSLPFAMSELGWGPGIAVLI-ISWVITLYTLWQMVEMH 368 + +G G+ SLP AM+ + W PG ++++ + ++ L T +VE++ Sbjct: 18 IATVIGGGMFSLPIAMAGI-WFPGASIILTLIAIMMLLTGLMLVEVN 63
>LAX4_ORYSA (Q53JG7) Putative auxin transporter-like protein 4| Length = 480 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +3 Query: 210 WYSAFHNVTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLW 350 W+S N A V +L+LP++ S+LG G+A + ++ +T + Sbjct: 59 WFSCASNQVAQV---LLTLPYSFSQLGMASGVAFQVFYGLMGSWTAY 102
>G6PI_ACILW (Q9RMC1) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 557 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +3 Query: 252 GVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMV 359 GV + P MSE G P +L+ WV Y+LW + Sbjct: 248 GVSTKPDKMSEWGIAPENQLLLWDWVGGRYSLWSCI 283
>ARCD_CLOPE (Q46170) Arginine/ornithine antiporter| Length = 478 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 231 VTAXVGAGVLSLPFAMSELGWGPGIAVLIISWVIT 335 V + +G G +LP S++ G G +II W+IT Sbjct: 21 VGSMIGGGAFNLP---SDMARGAGTGAVIIGWIIT 52
>MTR_SHIFL (P0AAD3) Tryptophan-specific transport protein (Tryptophan| permease) Length = 414 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +3 Query: 243 VGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVE 362 +GAG+ SLP MS + +A LI +W L++ ++E Sbjct: 25 IGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILE 64
>MTR_ECOLI (P0AAD2) Tryptophan-specific transport protein (Tryptophan| permease) Length = 414 Score = 28.5 bits (62), Expect = 8.2 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +3 Query: 243 VGAGVLSLPFAMSELGWGPGIAVLIISWVITLYTLWQMVE 362 +GAG+ SLP MS + +A LI +W L++ ++E Sbjct: 25 IGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILE 64 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,510,855 Number of Sequences: 219361 Number of extensions: 694317 Number of successful extensions: 2464 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2391 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2461 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
