Clone Name | bart09b02 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009370.1| Triticum aestivum clone wlm96.pk028.h14:fis, full insert mRNA sequence Length = 1695 Score = 615 bits (310), Expect = e-173 Identities = 371/393 (94%) Strand = Plus / Plus Query: 62 ctccattgctcaagacaaggccggccggcagaaaatggggacgcaggcngcggaaaacgt 121 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| | Sbjct: 56 ctccattgctcaagacaaggccggccggcagaacatggggacgcaggcagcggagaactt 115 Query: 122 cgacccgccggcnaaggatgtcaggacagatgagcaaaagaagatcgatgactggctccc 181 ||| |||| ||| |||||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct: 116 cgaaccgctggccaaggatgtcaggacggatgagcagaagaagatcgacgactggctccc 175 Query: 182 gatcacgtcgtcgaggaacgccnagtggtggtactcggccttccacaatgtcaccgccnt 241 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 176 tatcacgtcgtcgaggaacgccaagtggtggtactcggccttccacaatgtcaccgccat 235 Query: 242 ggttggcgcgggagtgctcagtctccccttcgccatgtccgagctcggctggggtcctgg 301 ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||| Sbjct: 236 ggtgggcgcgggagtgctcagcctcccctacgccatgtccgagctcggctggggccctgg 295 Query: 302 tatcgcggtgctgatcatctcgtgggtgatcacgctctacacgctgtggcagatggtgga 361 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 catcgcggtgctgatcatctcgtgggtgatcacgctctacacgctgtggcagatggtgga 355 Query: 362 gatgcacgagatggtgcccgggaagcggttcgacaggtaccacgagctcgggcagcacgc 421 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 356 gatgcacgagatggtgcccgggaagcggttcgaccggtaccacgagctcgggcagcacgc 415 Query: 422 gttcggcgacnagctgggcctctggatcgtggt 454 ||||||||| ||||||| |||||||||||||| Sbjct: 416 cttcggcgacaagctggggctctggatcgtggt 448
>gb|BT009250.1| Triticum aestivum clone wlk4.pk0003.e2:fis, full insert mRNA sequence Length = 1703 Score = 593 bits (299), Expect = e-166 Identities = 370/394 (93%), Gaps = 1/394 (0%) Strand = Plus / Plus Query: 62 ctccattgctcaagacaaggcc-ggccggcagaaaatggggacgcaggcngcggaaaacg 120 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||| Sbjct: 30 ctccattgctcaagacaaggcccggccggcagaacatggggacgcaggcagcggagaact 89 Query: 121 tcgacccgccggcnaaggatgtcaggacagatgagcaaaagaagatcgatgactggctcc 180 |||| |||||||| |||||||||||||| |||||||| |||||||| || |||||||||| Sbjct: 90 tcgaaccgccggccaaggatgtcaggacggatgagcagaagaagattgacgactggctcc 149 Query: 181 cgatcacgtcgtcgaggaacgccnagtggtggtactcggccttccacaatgtcaccgccn 240 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 150 cgatcacgtcgtcgaggaacgccaagtggtggtactcggccttccacaatgtcaccgcca 209 Query: 241 tggttggcgcgggagtgctcagtctccccttcgccatgtccgagctcggctggggtcctg 300 |||| |||||||| |||||||| ||||||| |||||||||||||||||||||||| |||| Sbjct: 210 tggtcggcgcgggggtgctcagcctcccctacgccatgtccgagctcggctggggccctg 269 Query: 301 gtatcgcggtgctgatcatctcgtgggtgatcacgctctacacgctgtggcagatggtgg 360 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 270 gcatcgcggtgctggtcatctcgtgggtgatcacgctctacacgctgtggcagatggtgg 329 Query: 361 agatgcacgagatggtgcccgggaagcggttcgacaggtaccacgagctcgggcagcacg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 330 agatgcacgagatggtgcccgggaagcggttcgacaggtaccacgagctcgggcagcacg 389 Query: 421 cgttcggcgacnagctgggcctctggatcgtggt 454 | ||||||||| ||||||| || ||||||||||| Sbjct: 390 ccttcggcgacaagctggggctgtggatcgtggt 423
>ref|XM_479903.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1743 Score = 408 bits (206), Expect = e-111 Identities = 269/291 (92%) Strand = Plus / Plus Query: 164 gatcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggcctt 223 |||||| |||||||| || ||||||||||| ||||||||| ||||||||||||| ||||| Sbjct: 169 gatcgacgactggcttcccatcacgtcgtccaggaacgccaagtggtggtactccgcctt 228 Query: 224 ccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccga 283 |||||||||||||||| |||| ||||| || || ||||| ||||||| |||||||||||| Sbjct: 229 ccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatgtccga 288 Query: 284 gctcggctggggtcctggtatcgcggtgctgatcatctcgtgggtgatcacgctctacac 343 |||||||||||| ||||| ||||||||||||||| | || ||| | |||||||||||||| Sbjct: 289 gctcggctggggacctggcatcgcggtgctgatcctgtcatggatcatcacgctctacac 348 Query: 344 gctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtacca 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 gctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtacca 408 Query: 404 cgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 409 cgagctcgggcagcacgcgttcggcgagaagctgggcctctggatcgtggt 459
>ref|XM_507109.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1163_G08.25 mRNA Length = 1755 Score = 408 bits (206), Expect = e-111 Identities = 269/291 (92%) Strand = Plus / Plus Query: 164 gatcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggcctt 223 |||||| |||||||| || ||||||||||| ||||||||| ||||||||||||| ||||| Sbjct: 243 gatcgacgactggcttcccatcacgtcgtccaggaacgccaagtggtggtactccgcctt 302 Query: 224 ccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccga 283 |||||||||||||||| |||| ||||| || || ||||| ||||||| |||||||||||| Sbjct: 303 ccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatgtccga 362 Query: 284 gctcggctggggtcctggtatcgcggtgctgatcatctcgtgggtgatcacgctctacac 343 |||||||||||| ||||| ||||||||||||||| | || ||| | |||||||||||||| Sbjct: 363 gctcggctggggacctggcatcgcggtgctgatcctgtcatggatcatcacgctctacac 422 Query: 344 gctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtacca 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 gctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtacca 482 Query: 404 cgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 483 cgagctcgggcagcacgcgttcggcgagaagctgggcctctggatcgtggt 533
>dbj|AK102015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080E11, full insert sequence Length = 1754 Score = 408 bits (206), Expect = e-111 Identities = 269/291 (92%) Strand = Plus / Plus Query: 164 gatcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggcctt 223 |||||| |||||||| || ||||||||||| ||||||||| ||||||||||||| ||||| Sbjct: 243 gatcgacgactggcttcccatcacgtcgtccaggaacgccaagtggtggtactccgcctt 302 Query: 224 ccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccga 283 |||||||||||||||| |||| ||||| || || ||||| ||||||| |||||||||||| Sbjct: 303 ccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatgtccga 362 Query: 284 gctcggctggggtcctggtatcgcggtgctgatcatctcgtgggtgatcacgctctacac 343 |||||||||||| ||||| ||||||||||||||| | || ||| | |||||||||||||| Sbjct: 363 gctcggctggggacctggcatcgcggtgctgatcctgtcatggatcatcacgctctacac 422 Query: 344 gctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtacca 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 gctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtacca 482 Query: 404 cgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 483 cgagctcgggcagcacgcgttcggcgagaagctgggcctctggatcgtggt 533
>dbj|AK065217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002G10, full insert sequence Length = 1744 Score = 408 bits (206), Expect = e-111 Identities = 269/291 (92%) Strand = Plus / Plus Query: 164 gatcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggcctt 223 |||||| |||||||| || ||||||||||| ||||||||| ||||||||||||| ||||| Sbjct: 170 gatcgacgactggcttcccatcacgtcgtccaggaacgccaagtggtggtactccgcctt 229 Query: 224 ccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccga 283 |||||||||||||||| |||| ||||| || || ||||| ||||||| |||||||||||| Sbjct: 230 ccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatgtccga 289 Query: 284 gctcggctggggtcctggtatcgcggtgctgatcatctcgtgggtgatcacgctctacac 343 |||||||||||| ||||| ||||||||||||||| | || ||| | |||||||||||||| Sbjct: 290 gctcggctggggacctggcatcgcggtgctgatcctgtcatggatcatcacgctctacac 349 Query: 344 gctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtacca 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 350 gctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtacca 409 Query: 404 cgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 410 cgagctcgggcagcacgcgttcggcgagaagctgggcctctggatcgtggt 460
>dbj|AK070297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052C04, full insert sequence Length = 1769 Score = 295 bits (149), Expect = 6e-77 Identities = 254/290 (87%) Strand = Plus / Plus Query: 165 atcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggccttc 224 ||||| ||||||||||| ||||| || || | |||||| ||||||||||||| || ||| Sbjct: 141 atcgacgactggctccccatcacctcctcccgcaacgccaagtggtggtactccgctttc 200 Query: 225 cacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccgag 284 ||||| ||||||||| |||| ||||| || || ||||| ||||||||||||||||||||| Sbjct: 201 cacaacgtcaccgccatggtcggcgccggcgtcctcagcctccccttcgccatgtccgag 260 Query: 285 ctcggctggggtcctggtatcgcggtgctgatcatctcgtgggtgatcacgctctacacg 344 |||||||||||||| || | |||| | ||||||| ||||||||||||||||| |||||| Sbjct: 261 ctcggctggggtccgggggtggcggcgatgatcatgtcgtgggtgatcacgctgtacacg 320 Query: 345 ctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtaccac 404 ||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||||| Sbjct: 321 ctgtggcagatggtggagatgcacgagtgcgtgccggggcggcggttcgaccggtaccac 380 Query: 405 gagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 ||||||||||||||||||||||| ||| ||||||| || ||||||||||| Sbjct: 381 gagctcgggcagcacgcgttcggggacaagctggggctgtggatcgtggt 430
>emb|AJ557777.1|OSA557777 Oryza sativa (indica cultivar-group) proplastid ht gene for histidine amino acid transporter Length = 3919 Score = 254 bits (128), Expect = 2e-64 Identities = 154/163 (94%) Strand = Plus / Plus Query: 292 ggggtcctggtatcgcggtgctgatcatctcgtgggtgatcacgctctacacgctgtggc 351 |||| ||||| ||||||||||||||| | || ||| | |||||||||||||||||||||| Sbjct: 1583 ggggacctggcatcgcggtgctgatcctgtcatggatcatcacgctctacacgctgtggc 1642 Query: 352 agatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtaccacgagctcg 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1643 agatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtaccacgagctcg 1702 Query: 412 ggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 ||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1703 ggcagcacgcgttcggcgagaagctgggcctctggatcgtggt 1745 Score = 159 bits (80), Expect = 1e-35 Identities = 117/130 (90%) Strand = Plus / Plus Query: 164 gatcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggcctt 223 |||||| |||||||| || ||||||||||| ||||||||| ||||||||||||| ||||| Sbjct: 1363 gatcgacgactggcttcccatcacgtcgtccaggaacgccaagtggtggtactccgcctt 1422 Query: 224 ccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccga 283 |||||||||||||||| |||| ||||| || || ||||| ||||||| |||||||||||| Sbjct: 1423 ccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatgtccga 1482 Query: 284 gctcggctgg 293 |||||||||| Sbjct: 1483 gctcggctgg 1492
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 254 bits (128), Expect = 2e-64 Identities = 154/163 (94%) Strand = Plus / Plus Query: 292 ggggtcctggtatcgcggtgctgatcatctcgtgggtgatcacgctctacacgctgtggc 351 |||| ||||| ||||||||||||||| | || ||| | |||||||||||||||||||||| Sbjct: 1558847 ggggacctggcatcgcggtgctgatcctgtcatggatcatcacgctctacacgctgtggc 1558906 Query: 352 agatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtaccacgagctcg 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1558907 agatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtaccacgagctcg 1558966 Query: 412 ggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 ||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1558967 ggcagcacgcgttcggcgagaagctgggcctctggatcgtggt 1559009 Score = 159 bits (80), Expect = 1e-35 Identities = 117/130 (90%) Strand = Plus / Plus Query: 164 gatcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggcctt 223 |||||| |||||||| || ||||||||||| ||||||||| ||||||||||||| ||||| Sbjct: 1558627 gatcgacgactggcttcccatcacgtcgtccaggaacgccaagtggtggtactccgcctt 1558686 Query: 224 ccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccga 283 |||||||||||||||| |||| ||||| || || ||||| ||||||| |||||||||||| Sbjct: 1558687 ccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatgtccga 1558746 Query: 284 gctcggctgg 293 |||||||||| Sbjct: 1558747 gctcggctgg 1558756
>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1163_G08 Length = 150676 Score = 254 bits (128), Expect = 2e-64 Identities = 154/163 (94%) Strand = Plus / Plus Query: 292 ggggtcctggtatcgcggtgctgatcatctcgtgggtgatcacgctctacacgctgtggc 351 |||| ||||| ||||||||||||||| | || ||| | |||||||||||||||||||||| Sbjct: 86335 ggggacctggcatcgcggtgctgatcctgtcatggatcatcacgctctacacgctgtggc 86394 Query: 352 agatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtaccacgagctcg 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86395 agatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtaccacgagctcg 86454 Query: 412 ggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 ||||||||||||||||||| |||||||||||||||||||||| Sbjct: 86455 ggcagcacgcgttcggcgagaagctgggcctctggatcgtggt 86497 Score = 159 bits (80), Expect = 1e-35 Identities = 117/130 (90%) Strand = Plus / Plus Query: 164 gatcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggcctt 223 |||||| |||||||| || ||||||||||| ||||||||| ||||||||||||| ||||| Sbjct: 86115 gatcgacgactggcttcccatcacgtcgtccaggaacgccaagtggtggtactccgcctt 86174 Query: 224 ccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccga 283 |||||||||||||||| |||| ||||| || || ||||| ||||||| |||||||||||| Sbjct: 86175 ccacaatgtcaccgccatggtcggcgccggcgtcctcagcctcccctacgccatgtccga 86234 Query: 284 gctcggctgg 293 |||||||||| Sbjct: 86235 gctcggctgg 86244
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 180 bits (91), Expect = 3e-42 Identities = 129/142 (90%) Strand = Plus / Plus Query: 313 tgatcatctcgtgggtgatcacgctctacacgctgtggcagatggtggagatgcacgaga 372 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 7996771 tgatcatgtcgtgggtgatcacgctgtacacgctgtggcagatggtggagatgcacgagt 7996830 Query: 373 tggtgcccgggaagcggttcgacaggtaccacgagctcgggcagcacgcgttcggcgacn 432 ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct: 7996831 gcgtgccggggcggcggttcgaccggtaccacgagctcgggcagcacgcgttcggggaca 7996890 Query: 433 agctgggcctctggatcgtggt 454 ||||||| || ||||||||||| Sbjct: 7996891 agctggggctgtggatcgtggt 7996912 Score = 125 bits (63), Expect = 1e-25 Identities = 112/129 (86%) Strand = Plus / Plus Query: 165 atcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggccttc 224 ||||| ||||||||||| ||||| || || | |||||| ||||||||||||| || ||| Sbjct: 7996540 atcgacgactggctccccatcacctcctcccgcaacgccaagtggtggtactccgctttc 7996599 Query: 225 cacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccgag 284 ||||| ||||||||| |||| ||||| || || ||||| ||||||||||||||||||||| Sbjct: 7996600 cacaacgtcaccgccatggtcggcgccggcgtcctcagcctccccttcgccatgtccgag 7996659 Query: 285 ctcggctgg 293 ||||||||| Sbjct: 7996660 ctcggctgg 7996668
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 180 bits (91), Expect = 3e-42 Identities = 129/142 (90%) Strand = Plus / Plus Query: 313 tgatcatctcgtgggtgatcacgctctacacgctgtggcagatggtggagatgcacgaga 372 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 7996652 tgatcatgtcgtgggtgatcacgctgtacacgctgtggcagatggtggagatgcacgagt 7996711 Query: 373 tggtgcccgggaagcggttcgacaggtaccacgagctcgggcagcacgcgttcggcgacn 432 ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct: 7996712 gcgtgccggggcggcggttcgaccggtaccacgagctcgggcagcacgcgttcggggaca 7996771 Query: 433 agctgggcctctggatcgtggt 454 ||||||| || ||||||||||| Sbjct: 7996772 agctggggctgtggatcgtggt 7996793 Score = 125 bits (63), Expect = 1e-25 Identities = 112/129 (86%) Strand = Plus / Plus Query: 165 atcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggccttc 224 ||||| ||||||||||| ||||| || || | |||||| ||||||||||||| || ||| Sbjct: 7996421 atcgacgactggctccccatcacctcctcccgcaacgccaagtggtggtactccgctttc 7996480 Query: 225 cacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccgag 284 ||||| ||||||||| |||| ||||| || || ||||| ||||||||||||||||||||| Sbjct: 7996481 cacaacgtcaccgccatggtcggcgccggcgtcctcagcctccccttcgccatgtccgag 7996540 Query: 285 ctcggctgg 293 ||||||||| Sbjct: 7996541 ctcggctgg 7996549
>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153111 Score = 180 bits (91), Expect = 3e-42 Identities = 129/142 (90%) Strand = Plus / Minus Query: 313 tgatcatctcgtgggtgatcacgctctacacgctgtggcagatggtggagatgcacgaga 372 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 3399 tgatcatgtcgtgggtgatcacgctgtacacgctgtggcagatggtggagatgcacgagt 3340 Query: 373 tggtgcccgggaagcggttcgacaggtaccacgagctcgggcagcacgcgttcggcgacn 432 ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct: 3339 gcgtgccggggcggcggttcgaccggtaccacgagctcgggcagcacgcgttcggggaca 3280 Query: 433 agctgggcctctggatcgtggt 454 ||||||| || ||||||||||| Sbjct: 3279 agctggggctgtggatcgtggt 3258 Score = 125 bits (63), Expect = 1e-25 Identities = 112/129 (86%) Strand = Plus / Minus Query: 165 atcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggccttc 224 ||||| ||||||||||| ||||| || || | |||||| ||||||||||||| || ||| Sbjct: 3630 atcgacgactggctccccatcacctcctcccgcaacgccaagtggtggtactccgctttc 3571 Query: 225 cacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccgag 284 ||||| ||||||||| |||| ||||| || || ||||| ||||||||||||||||||||| Sbjct: 3570 cacaacgtcaccgccatggtcggcgccggcgtcctcagcctccccttcgccatgtccgag 3511 Query: 285 ctcggctgg 293 ||||||||| Sbjct: 3510 ctcggctgg 3502
>emb|AL732531.3|CNS08C96 Oryza sativa chromosome 12, . BAC OJ1005_G05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151117 Score = 180 bits (91), Expect = 3e-42 Identities = 129/142 (90%) Strand = Plus / Minus Query: 313 tgatcatctcgtgggtgatcacgctctacacgctgtggcagatggtggagatgcacgaga 372 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 146907 tgatcatgtcgtgggtgatcacgctgtacacgctgtggcagatggtggagatgcacgagt 146848 Query: 373 tggtgcccgggaagcggttcgacaggtaccacgagctcgggcagcacgcgttcggcgacn 432 ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct: 146847 gcgtgccggggcggcggttcgaccggtaccacgagctcgggcagcacgcgttcggggaca 146788 Query: 433 agctgggcctctggatcgtggt 454 ||||||| || ||||||||||| Sbjct: 146787 agctggggctgtggatcgtggt 146766 Score = 125 bits (63), Expect = 1e-25 Identities = 112/129 (86%) Strand = Plus / Minus Query: 165 atcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggccttc 224 ||||| ||||||||||| ||||| || || | |||||| ||||||||||||| || ||| Sbjct: 147138 atcgacgactggctccccatcacctcctcccgcaacgccaagtggtggtactccgctttc 147079 Query: 225 cacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccgag 284 ||||| ||||||||| |||| ||||| || || ||||| ||||||||||||||||||||| Sbjct: 147078 cacaacgtcaccgccatggtcggcgccggcgtcctcagcctccccttcgccatgtccgag 147019 Query: 285 ctcggctgg 293 ||||||||| Sbjct: 147018 ctcggctgg 147010
>gb|AY109430.1| Zea mays CL217_2 mRNA sequence Length = 2589 Score = 176 bits (89), Expect = 4e-41 Identities = 115/124 (92%) Strand = Plus / Plus Query: 331 tcacgctctacacgctgtggcagatggtggagatgcacgagatggtgcccgggaagcggt 390 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 464 tcacgctgtacacgctgtggcagatggtggagatgcacgagatggtccccgggaagcggt 523 Query: 391 tcgacaggtaccacgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcg 450 ||||| | ||||||||||| ||||||||||||||||| ||| ||||||||| ||||||| Sbjct: 524 tcgaccgttaccacgagctggggcagcacgcgttcggggaccggctgggcctgtggatcg 583 Query: 451 tggt 454 |||| Sbjct: 584 tggt 587 Score = 165 bits (83), Expect = 2e-37 Identities = 123/137 (89%) Strand = Plus / Plus Query: 165 atcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggccttc 224 ||||| ||||||||||||||||| |||||| |||||||| ||||||||||||| |||||| Sbjct: 298 atcgacgactggctcccgatcacctcgtcgcggaacgccaagtggtggtactccgccttc 357 Query: 225 cacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccgag 284 ||||||||||||||| |||| ||||| || |||||||| || |||| ||||||||||||| Sbjct: 358 cacaatgtcaccgccatggtcggcgccggcgtgctcagcctgccctacgccatgtccgag 417 Query: 285 ctcggctggggtcctgg 301 || |||||||| ||||| Sbjct: 418 cttggctggggccctgg 434
>gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1122_B08, complete sequence Length = 143955 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/128 (83%) Strand = Plus / Minus Query: 166 tcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggccttcc 225 |||| ||||||||||| ||||| ||||| | | |||| |||||| ||||| || |||| Sbjct: 50004 tcgacgactggctccccatcacctcgtcccgcaccgccaagtggtactactccgcgttcc 49945 Query: 226 acaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccgagc 285 |||| ||||||||| |||| ||||| || || ||| | |||||||||||||||||| ||| Sbjct: 49944 acaacgtcaccgccatggtcggcgccggcgtcctcggcctccccttcgccatgtcccagc 49885 Query: 286 tcggctgg 293 |||||||| Sbjct: 49884 tcggctgg 49877 Score = 75.8 bits (38), Expect = 1e-10 Identities = 76/89 (85%), Gaps = 6/89 (6%) Strand = Plus / Minus Query: 330 atcacgctctacacgctgtggcagatggtggagatgcacgagatggtgcc------cggg 383 |||||||||||||||||||||||| |||||||| | |||||| || ||| |||| Sbjct: 49840 atcacgctctacacgctgtggcagctggtggagctccacgagccggcgcccggcggcggg 49781 Query: 384 aagcggttcgacaggtaccacgagctcgg 412 |||||||||||| |||||||||||||||| Sbjct: 49780 aagcggttcgaccggtaccacgagctcgg 49752
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/128 (83%) Strand = Plus / Minus Query: 166 tcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactcggccttcc 225 |||| ||||||||||| ||||| ||||| | | |||| |||||| ||||| || |||| Sbjct: 8328960 tcgacgactggctccccatcacctcgtcccgcaccgccaagtggtactactccgcgttcc 8328901 Query: 226 acaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtccgagc 285 |||| ||||||||| |||| ||||| || || ||| | |||||||||||||||||| ||| Sbjct: 8328900 acaacgtcaccgccatggtcggcgccggcgtcctcggcctccccttcgccatgtcccagc 8328841 Query: 286 tcggctgg 293 |||||||| Sbjct: 8328840 tcggctgg 8328833 Score = 75.8 bits (38), Expect = 1e-10 Identities = 76/89 (85%), Gaps = 6/89 (6%) Strand = Plus / Minus Query: 330 atcacgctctacacgctgtggcagatggtggagatgcacgagatggtgcc------cggg 383 |||||||||||||||||||||||| |||||||| | |||||| || ||| |||| Sbjct: 8328796 atcacgctctacacgctgtggcagctggtggagctccacgagccggcgcccggcggcggg 8328737 Query: 384 aagcggttcgacaggtaccacgagctcgg 412 |||||||||||| |||||||||||||||| Sbjct: 8328736 aagcggttcgaccggtaccacgagctcgg 8328708
>ref|NM_105432.1| Arabidopsis thaliana amino acid permease/ amino acid-polyamine transporter AT1G67640 mRNA, complete cds Length = 1326 Score = 85.7 bits (43), Expect = 1e-13 Identities = 99/118 (83%) Strand = Plus / Plus Query: 337 tctacacgctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgaca 396 ||||||| || |||||||||||| | |||||||||||||| || |||||| ||||||||| Sbjct: 227 tctacacactatggcagatggtgcaaatgcacgagatggttccagggaagaggttcgaca 286 Query: 397 ggtaccacgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 |||||||||| | || || |||||||| || || |||| || || ||||||||||| Sbjct: 287 ggtaccacgaattaggccaacacgcgtttggggagaagctcggactatggatcgtggt 344 Score = 52.0 bits (26), Expect = 0.002 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 gccnagtggtggtactcggccttccacaatgtcaccgccntggt 244 ||| ||||||||||||| || || ||||||||||||||| |||| Sbjct: 91 gccaagtggtggtactctgcgtttcacaatgtcaccgccatggt 134
>gb|DQ446407.1| Arabidopsis thaliana clone pENTR221-At1g67640 lysine and histidine specific transporter (At1g67640) mRNA, complete cds Length = 1326 Score = 85.7 bits (43), Expect = 1e-13 Identities = 99/118 (83%) Strand = Plus / Plus Query: 337 tctacacgctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgaca 396 ||||||| || |||||||||||| | |||||||||||||| || |||||| ||||||||| Sbjct: 227 tctacacactatggcagatggtgcaaatgcacgagatggttccagggaagaggttcgaca 286 Query: 397 ggtaccacgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 |||||||||| | || || |||||||| || || |||| || || ||||||||||| Sbjct: 287 ggtaccacgaattaggccaacacgcgtttggggagaagctcggactatggatcgtggt 344 Score = 52.0 bits (26), Expect = 0.002 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 gccnagtggtggtactcggccttccacaatgtcaccgccntggt 244 ||| ||||||||||||| || || ||||||||||||||| |||| Sbjct: 91 gccaagtggtggtactctgcgtttcacaatgtcaccgccatggt 134
>gb|AC011020.8|AC011020 Arabidopsis thaliana chromosome 1 BAC F12B7 genomic sequence, complete sequence Length = 91529 Score = 85.7 bits (43), Expect = 1e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 337 tctacacgctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgaca 396 ||||||| || |||||||||||| | |||||||||||||| || |||||| ||||||||| Sbjct: 86038 tctacacactatggcagatggtgcaaatgcacgagatggttccagggaagaggttcgaca 85979 Query: 397 ggtaccacgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 |||||||||| | || || |||||||| || || |||| || || ||||||||||| Sbjct: 85978 ggtaccacgaattaggccaacacgcgtttggggagaagctcggactatggatcgtggt 85921 Score = 52.0 bits (26), Expect = 0.002 Identities = 39/44 (88%) Strand = Plus / Minus Query: 201 gccnagtggtggtactcggccttccacaatgtcaccgccntggt 244 ||| ||||||||||||| || || ||||||||||||||| |||| Sbjct: 86268 gccaagtggtggtactctgcgtttcacaatgtcaccgccatggt 86225
>gb|AC008113.4|AC008113 Genomic sequence for Arabidopsis thaliana BAC F12A21 from chromosome I, complete sequence Length = 114190 Score = 85.7 bits (43), Expect = 1e-13 Identities = 99/118 (83%) Strand = Plus / Plus Query: 337 tctacacgctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgaca 396 ||||||| || |||||||||||| | |||||||||||||| || |||||| ||||||||| Sbjct: 89776 tctacacactatggcagatggtgcaaatgcacgagatggttccagggaagaggttcgaca 89835 Query: 397 ggtaccacgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgtggt 454 |||||||||| | || || |||||||| || || |||| || || ||||||||||| Sbjct: 89836 ggtaccacgaattaggccaacacgcgtttggggagaagctcggactatggatcgtggt 89893 Score = 52.0 bits (26), Expect = 0.002 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 gccnagtggtggtactcggccttccacaatgtcaccgccntggt 244 ||| ||||||||||||| || || ||||||||||||||| |||| Sbjct: 89546 gccaagtggtggtactctgcgtttcacaatgtcaccgccatggt 89589
>ref|NM_105822.1| Arabidopsis thaliana amino acid permease AT1G71680 mRNA, complete cds Length = 1305 Score = 75.8 bits (38), Expect = 1e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 213 tactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttc 272 ||||| ||||||||||||||||| ||| |||||||||| ||||| || ||||||| ||| Sbjct: 127 tactccgccttccacaatgtcacggccatggttggcgccggagttcttggtctccctttc 186 Query: 273 gccatgtccgagctcggctggggtcctgg 301 |||||||| | || |||||||| ||||| Sbjct: 187 gccatgtcacaacttggctggggacctgg 215
>gb|AC016163.6|AC016163 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence Length = 89653 Score = 73.8 bits (37), Expect = 4e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 213 tactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttc 272 ||||| ||||||||||||||||| ||| |||||||||| ||||| || ||||||| ||| Sbjct: 31073 tactccgccttccacaatgtcacggccatggttggcgccggagttcttggtctccctttc 31014 Query: 273 gccatgtc 280 |||||||| Sbjct: 31013 gccatgtc 31006
>gb|AC012654.2|F14O23 Arabidopsis thaliana chromosome 1 BAC F14O23 sequence, complete sequence Length = 98471 Score = 73.8 bits (37), Expect = 4e-10 Identities = 60/68 (88%) Strand = Plus / Plus Query: 213 tactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttc 272 ||||| ||||||||||||||||| ||| |||||||||| ||||| || ||||||| ||| Sbjct: 4261 tactccgccttccacaatgtcacggccatggttggcgccggagttcttggtctccctttc 4320 Query: 273 gccatgtc 280 |||||||| Sbjct: 4321 gccatgtc 4328
>ref|NM_102364.2| Arabidopsis thaliana amino acid permease AT1G25530 mRNA, complete cds Length = 1606 Score = 63.9 bits (32), Expect = 4e-07 Identities = 54/62 (87%) Strand = Plus / Plus Query: 201 gccnagtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctc 260 ||| ||||||||||||| ||||||||| ||||||||| || ||||||||||||| ||| Sbjct: 88 gccaagtggtggtactccaccttccacaccgtcaccgccatgattggcgcgggagtcctc 147 Query: 261 ag 262 || Sbjct: 148 ag 149
>emb|BX818092.1|CNS0ACQ3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL60ZC06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 733 Score = 63.9 bits (32), Expect = 4e-07 Identities = 54/62 (87%) Strand = Plus / Plus Query: 201 gccnagtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctc 260 ||| ||||||||||||| ||||||||| ||||||||| || ||||||||||||| ||| Sbjct: 108 gccgagtggtggtactccaccttccacaccgtcaccgccatgattggcgcgggagtcctc 167 Query: 261 ag 262 || Sbjct: 168 ag 169
>gb|BT022015.1| Arabidopsis thaliana At1g25530 gene, complete cds Length = 1468 Score = 63.9 bits (32), Expect = 4e-07 Identities = 54/62 (87%) Strand = Plus / Plus Query: 201 gccnagtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctc 260 ||| ||||||||||||| ||||||||| ||||||||| || ||||||||||||| ||| Sbjct: 125 gccaagtggtggtactccaccttccacaccgtcaccgccatgattggcgcgggagtcctc 184 Query: 261 ag 262 || Sbjct: 185 ag 186
>gb|AC079281.4|AC079281 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence Length = 102540 Score = 63.9 bits (32), Expect = 4e-07 Identities = 54/62 (87%) Strand = Plus / Plus Query: 201 gccnagtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctc 260 ||| ||||||||||||| ||||||||| ||||||||| || ||||||||||||| ||| Sbjct: 34017 gccaagtggtggtactccaccttccacaccgtcaccgccatgattggcgcgggagtcctc 34076 Query: 261 ag 262 || Sbjct: 34077 ag 34078
>ref|NM_102286.2| Arabidopsis thaliana AATL2 (AMINO ACID TRANSPORTER-LIKE PROTEIN 2); amino acid permease AT1G24400 (AATL2) mRNA, complete cds Length = 1749 Score = 60.0 bits (30), Expect = 7e-06 Identities = 92/113 (81%) Strand = Plus / Plus Query: 339 tacacgctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacagg 398 ||||| |||||||| |||||||||||||| ||||| || || |||||| || | || ||| Sbjct: 496 tacacactgtggcaaatggtggagatgcatgagattgttccagggaagaggcttgatagg 555 Query: 399 taccacgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgt 451 || |||||||| || || ||||| || || || |||| ||||| |||||||| Sbjct: 556 tatcacgagctaggtcaacacgcttttggtgaaaagcttggcctatggatcgt 608 Score = 60.0 bits (30), Expect = 7e-06 Identities = 58/68 (85%) Strand = Plus / Plus Query: 180 ccgatcacgtcgtcgaggaacgccnagtggtggtactcggccttccacaatgtcaccgcc 239 |||||||| || || || ||||| ||||||||||||| || || ||||||||||||||| Sbjct: 337 ccgatcacatcttccagaaacgctaagtggtggtactctgcttttcacaatgtcaccgcc 396 Query: 240 ntggttgg 247 ||||||| Sbjct: 397 atggttgg 404
>gb|AC000103.2|AC000103 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I, complete sequence Length = 99392 Score = 60.0 bits (30), Expect = 7e-06 Identities = 58/68 (85%) Strand = Plus / Minus Query: 180 ccgatcacgtcgtcgaggaacgccnagtggtggtactcggccttccacaatgtcaccgcc 239 |||||||| || || || ||||| ||||||||||||| || || ||||||||||||||| Sbjct: 14318 ccgatcacatcttccagaaacgctaagtggtggtactctgcttttcacaatgtcaccgcc 14259 Query: 240 ntggttgg 247 ||||||| Sbjct: 14258 atggttgg 14251 Score = 60.0 bits (30), Expect = 7e-06 Identities = 92/113 (81%) Strand = Plus / Minus Query: 339 tacacgctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacagg 398 ||||| |||||||| |||||||||||||| ||||| || || |||||| || | || ||| Sbjct: 14075 tacacactgtggcaaatggtggagatgcatgagattgttccagggaagaggcttgatagg 14016 Query: 399 taccacgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgt 451 || |||||||| || || ||||| || || || |||| ||||| |||||||| Sbjct: 14015 tatcacgagctaggtcaacacgcttttggtgaaaagcttggcctatggatcgt 13963
>dbj|AB046210.1| Arabidopsis thaliana AATL2 mRNA for amino acid transporter-like protein 2, complete cds Length = 1512 Score = 60.0 bits (30), Expect = 7e-06 Identities = 92/113 (81%) Strand = Plus / Plus Query: 339 tacacgctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacagg 398 ||||| |||||||| |||||||||||||| ||||| || || |||||| || | || ||| Sbjct: 250 tacacactgtggcaaatggtggagatgcatgagattgttccagggaagaggcttgatagg 309 Query: 399 taccacgagctcgggcagcacgcgttcggcgacnagctgggcctctggatcgt 451 || |||||||| || || ||||| || || || |||| ||||| |||||||| Sbjct: 310 tatcacgagctaggtcaacacgcttttggtgaaaagcttggcctatggatcgt 362 Score = 60.0 bits (30), Expect = 7e-06 Identities = 58/68 (85%) Strand = Plus / Plus Query: 180 ccgatcacgtcgtcgaggaacgccnagtggtggtactcggccttccacaatgtcaccgcc 239 |||||||| || || || ||||| ||||||||||||| || || ||||||||||||||| Sbjct: 91 ccgatcacatcttccagaaacgctaagtggtggtactctgcttttcacaatgtcaccgcc 150 Query: 240 ntggttgg 247 ||||||| Sbjct: 151 atggttgg 158
>ref|NM_123443.4| Arabidopsis thaliana LHT1 AT5G40780 (LHT1) transcript variant AT5G40780.2 mRNA, complete cds Length = 1671 Score = 56.0 bits (28), Expect = 1e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 205 agtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtc 264 ||||||||||||| || || ||||||||||||||| |||| || || ||||| || | | Sbjct: 248 agtggtggtactctgcttttcacaatgtcaccgccatggtcggtgccggagttcttggac 307 Query: 265 tccccttcgccatgtccgagctcggctgggg 295 |||| | ||||||||| ||||||| ||||| Sbjct: 308 tcccttacgccatgtctcagctcggatgggg 338
>ref|NM_180778.2| Arabidopsis thaliana LHT1; amino acid permease AT5G40780 (LHT1) transcript variant AT5G40780.1 mRNA, complete cds Length = 1705 Score = 56.0 bits (28), Expect = 1e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 205 agtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtc 264 ||||||||||||| || || ||||||||||||||| |||| || || ||||| || | | Sbjct: 282 agtggtggtactctgcttttcacaatgtcaccgccatggtcggtgccggagttcttggac 341 Query: 265 tccccttcgccatgtccgagctcggctgggg 295 |||| | ||||||||| ||||||| ||||| Sbjct: 342 tcccttacgccatgtctcagctcggatgggg 372
>gb|AY133550.1| Arabidopsis thaliana At5g40780/K1B16_3 mRNA, complete cds Length = 1341 Score = 56.0 bits (28), Expect = 1e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 205 agtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtc 264 ||||||||||||| || || ||||||||||||||| |||| || || ||||| || | | Sbjct: 110 agtggtggtactctgcttttcacaatgtcaccgccatggtcggtgccggagttcttggac 169 Query: 265 tccccttcgccatgtccgagctcggctgggg 295 |||| | ||||||||| ||||||| ||||| Sbjct: 170 tcccttacgccatgtctcagctcggatgggg 200
>gb|AF367281.1|AF367281 Arabidopsis thaliana AT5g40780/K1B16_3 mRNA, complete cds Length = 1631 Score = 56.0 bits (28), Expect = 1e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 205 agtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtc 264 ||||||||||||| || || ||||||||||||||| |||| || || ||||| || | | Sbjct: 213 agtggtggtactctgcttttcacaatgtcaccgccatggtcggtgccggagttcttggac 272 Query: 265 tccccttcgccatgtccgagctcggctgggg 295 |||| | ||||||||| ||||||| ||||| Sbjct: 273 tcccttacgccatgtctcagctcggatgggg 303
>emb|BX829958.1|CNS0A092 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB49ZF05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1499 Score = 56.0 bits (28), Expect = 1e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 205 agtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtc 264 ||||||||||||| || || ||||||||||||||| |||| || || ||||| || | | Sbjct: 121 agtggtggtactctgcttttcacaatgtcaccgccatggtcggtgccggagttcttggac 180 Query: 265 tccccttcgccatgtccgagctcggctgggg 295 |||| | ||||||||| ||||||| ||||| Sbjct: 181 tcccttacgccatgtctcagctcggatgggg 211
>emb|BX829887.1|CNS0A045 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB43ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1667 Score = 56.0 bits (28), Expect = 1e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 205 agtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtc 264 ||||||||||||| || || ||||||||||||||| |||| || || ||||| || | | Sbjct: 282 agtggtggtactctgcttttcacaatgtcaccgccatggtcggtgccggagttcttggac 341 Query: 265 tccccttcgccatgtccgagctcggctgggg 295 |||| | ||||||||| ||||||| ||||| Sbjct: 342 tcccttacgccatgtctcagctcggatgggg 372
>emb|BX830932.1|CNS09ZDV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS3ZG05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1638 Score = 56.0 bits (28), Expect = 1e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 205 agtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtc 264 ||||||||||||| || || ||||||||||||||| |||| || || ||||| || | | Sbjct: 248 agtggtggtactctgcttttcacaatgtcaccgccatggtcggtgccggagttcttggac 307 Query: 265 tccccttcgccatgtccgagctcggctgggg 295 |||| | ||||||||| ||||||| ||||| Sbjct: 308 tcccttacgccatgtctcagctcggatgggg 338
>gb|U39782.1|ATU39782 Arabidopsis thaliana lysine and histidine specific transporter mRNA, complete cds Length = 1664 Score = 56.0 bits (28), Expect = 1e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 205 agtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtc 264 ||||||||||||| || || ||||||||||||||| |||| || || ||||| || | | Sbjct: 210 agtggtggtactctgcttttcacaatgtcaccgccatggtcggtgccggagttcttggac 269 Query: 265 tccccttcgccatgtccgagctcggctgggg 295 |||| | ||||||||| ||||||| ||||| Sbjct: 270 tcccttacgccatgtctcagctcggatgggg 300
>ref|NM_111042.1| Arabidopsis thaliana amino acid permease/ amino acid-polyamine transporter AT3G01760 mRNA, complete cds Length = 1440 Score = 52.0 bits (26), Expect = 0.002 Identities = 121/153 (79%) Strand = Plus / Plus Query: 222 ttccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtcc 281 |||||||| ||||| ||| | ||||| || || || ||| |||| || | ||||||||| Sbjct: 193 ttccacaacgtcactgccattgttggtgctggcgttctcggtcttccttacgccatgtca 252 Query: 282 gagctcggctggggtcctggtatcgcggtgctgatcatctcgtgggtgatcacgctctac 341 ||||| || ||||| ||||| | | |||| ||||| | || |||||||||||| | ||| Sbjct: 253 gagcttggatggggacctggggttgtggtgttgatcctgtcatgggtgatcacgttatac 312 Query: 342 acgctgtggcagatggtggagatgcacgagatg 374 || || ||||| ||| | |||||||| |||||| Sbjct: 313 accctctggcaaatgattgagatgcatgagatg 345
>dbj|AB015470.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1B16 Length = 14323 Score = 52.0 bits (26), Expect = 0.002 Identities = 70/85 (82%) Strand = Plus / Plus Query: 205 agtggtggtactcggccttccacaatgtcaccgccntggttggcgcgggagtgctcagtc 264 ||||||||||||| || || ||||||||||||||| |||| || || ||||| || | | Sbjct: 13976 agtggtggtactctgcttttcacaatgtcaccgccatggtcggtgccggagttcttggac 14035 Query: 265 tccccttcgccatgtccgagctcgg 289 |||| | ||||||||| ||||||| Sbjct: 14036 tcccttacgccatgtctcagctcgg 14060
>emb|BX830230.1|CNS0A02G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB67ZF03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1501 Score = 50.1 bits (25), Expect = 0.006 Identities = 36/40 (90%) Strand = Plus / Plus Query: 205 agtggtggtactcggccttccacaatgtcaccgccntggt 244 ||||||||||||| || || ||||||||||||||| |||| Sbjct: 140 agtggtggtactctgcttttcacaatgtcaccgccatggt 179
>ref|NM_103760.2| Arabidopsis thaliana amino acid permease AT1G48640 mRNA, complete cds Length = 1362 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 339 tacacgctgtggcagatggtggagatgcacgagatggtgcccgg 382 |||||| | ||||| |||||||||||||| |||||||| ||||| Sbjct: 265 tacacgttatggcaaatggtggagatgcatgagatggttcccgg 308
>gb|AC073555.9|AC073555 Arabidopsis thaliana chromosome 1 BAC F11I4 genomic sequence, complete sequence Length = 80561 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Minus Query: 339 tacacgctgtggcagatggtggagatgcacgagatggtgcccgg 382 |||||| | ||||| |||||||||||||| |||||||| ||||| Sbjct: 75069 tacacgttatggcaaatggtggagatgcatgagatggttcccgg 75026 Score = 40.1 bits (20), Expect = 6.1 Identities = 46/55 (83%) Strand = Plus / Minus Query: 163 agatcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactc 217 |||||||||| ||||| ||||| || || ||||| ||||| | ||||||||||| Sbjct: 75498 agatcgatgattggcttccgataacttcatcgagaaacgcgaaatggtggtactc 75444
>gb|AE012516.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 424 of 460 of the complete genome Length = 10866 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 407 gctcgggcagcacgcgttcggcg 429 ||||||||||||||||||||||| Sbjct: 927 gctcgggcagcacgcgttcggcg 949
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 407 gctcgggcagcacgcgttcggcg 429 ||||||||||||||||||||||| Sbjct: 4758906 gctcgggcagcacgcgttcggcg 4758928
>ref|NM_104808.1| Arabidopsis thaliana amino acid permease AT1G61270 mRNA, complete cds Length = 1356 Score = 42.1 bits (21), Expect = 1.5 Identities = 146/188 (77%) Strand = Plus / Plus Query: 222 ttccacaatgtcaccgccntggttggcgcgggagtgctcagtctccccttcgccatgtcc 281 |||||||| ||||| ||| | ||||| || ||||| || ||||||| | ||||||||| Sbjct: 127 ttccacaacgtcactgccatagttggtgctggagttcttggtctcccttacgccatgtca 186 Query: 282 gagctcggctggggtcctggtatcgcggtgctgatcatctcgtgggtgatcacgctctac 341 || || || ||||| ||||| | | |||| ||||| | || ||||| || ||| | ||| Sbjct: 187 gaacttggatggggacctggagttgtggtgttgatcctgtcatgggtcataacgttatac 246 Query: 342 acgctgtggcagatggtggagatgcacgagatggtgcccgggaagcggttcgacaggtac 401 ||| | ||||| ||| | ||||||||||| ||| | ||||| ||||| || |||||| Sbjct: 247 acgttctggcaaatgattgagatgcacgaaatgtttgaagggaaacggtttgataggtac 306 Query: 402 cacgagct 409 |||||||| Sbjct: 307 cacgagct 314
>ref|XM_464074.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2103 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ttcgccatgtccgagctcgg 289 |||||||||||||||||||| Sbjct: 1046 ttcgccatgtccgagctcgg 1065
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 ggcagcacgcgttcggcgac 431 |||||||||||||||||||| Sbjct: 2725616 ggcagcacgcgttcggcgac 2725635
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gatgagcaaaagaagatcga 169 |||||||||||||||||||| Sbjct: 1937198 gatgagcaaaagaagatcga 1937179
>emb|AL590551.7| Human DNA sequence from clone RP11-243O10 on chromosome 6 Contains part of a novel gene (FNDC2), the 3' end of the FNDC1 gene for fibronectin type III domain containing 1, a novel gene and a CpG island, complete sequence Length = 106861 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ctcagtctccccttcgccat 277 |||||||||||||||||||| Sbjct: 66035 ctcagtctccccttcgccat 66016
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 ctcgggcagcacgcgttcggcgac 431 |||||||||||||| ||||||||| Sbjct: 293020 ctcgggcagcacgccttcggcgac 292997
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 ctcgggcagcacgcgttcggcgac 431 |||||||||||||| ||||||||| Sbjct: 52319 ctcgggcagcacgccttcggcgac 52296
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 ctcgggcagcacgcgttcggcgac 431 |||||||||||||| ||||||||| Sbjct: 130432 ctcgggcagcacgccttcggcgac 130409
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 ggcagcacgcgttcggcgac 431 |||||||||||||||||||| Sbjct: 906109 ggcagcacgcgttcggcgac 906128
>ref|XM_686819.1| PREDICTED: Danio rerio similar to phosphatidylinositol transfer protein (LOC563458), mRNA Length = 2529 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gacagatgagcaaaagaaga 165 |||||||||||||||||||| Sbjct: 1086 gacagatgagcaaaagaaga 1105
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 ggcagcacgcgttcggcgac 431 |||||||||||||||||||| Sbjct: 1223135 ggcagcacgcgttcggcgac 1223116
>gb|AC148667.1| Macaca mulatta Major Histocompatibility Complex BAC MMU025A04, complete sequence Length = 218267 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 gggagtgctcagtctcccct 270 |||||||||||||||||||| Sbjct: 209268 gggagtgctcagtctcccct 209287
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ttcgccatgtccgagctcgg 289 |||||||||||||||||||| Sbjct: 2042415 ttcgccatgtccgagctcgg 2042434
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 gggagtgctcagtctcccct 270 |||||||||||||||||||| Sbjct: 2224761 gggagtgctcagtctcccct 2224742
>gb|AC074308.1|AC074308 Arabidopsis thaliana chromosome 1 BAC F9P7 genomic sequence, complete sequence Length = 11606 Score = 40.1 bits (20), Expect = 6.1 Identities = 46/55 (83%) Strand = Plus / Minus Query: 163 agatcgatgactggctcccgatcacgtcgtcgaggaacgccnagtggtggtactc 217 |||||||||| ||||| ||||| || || ||||| ||||| | ||||||||||| Sbjct: 281 agatcgatgattggcttccgataacttcatcgagaaacgcgaaatggtggtactc 227
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ttcgccatgtccgagctcgg 289 |||||||||||||||||||| Sbjct: 92623 ttcgccatgtccgagctcgg 92642
>ref|XM_551134.1| Anopheles gambiae str. PEST ENSANGP00000028284 (ENSANGG00000019667), partial mRNA Length = 9543 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 atcacgctctacacgctgtg 349 |||||||||||||||||||| Sbjct: 2257 atcacgctctacacgctgtg 2276
>ref|XM_321424.2| Anopheles gambiae str. PEST ENSANGP00000022156 (ENSANGG00000019667), partial mRNA Length = 13383 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 atcacgctctacacgctgtg 349 |||||||||||||||||||| Sbjct: 5992 atcacgctctacacgctgtg 6011
>emb|CR855375.8| Zebrafish DNA sequence from clone CH211-159E12 in linkage group 11, complete sequence Length = 178231 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 gacagatgagcaaaagaaga 165 |||||||||||||||||||| Sbjct: 3335 gacagatgagcaaaagaaga 3316
>gb|AC171727.1| Lycopersicon esculentum chromosome 01 clone C01HBa0163B20, complete sequence Length = 134102 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 aagaagatcgatgactggct 178 |||||||||||||||||||| Sbjct: 10970 aagaagatcgatgactggct 10989 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,077,403 Number of Sequences: 3902068 Number of extensions: 2077403 Number of successful extensions: 34099 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 33700 Number of HSP's gapped (non-prelim): 399 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)