ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09a10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478229.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1266 Score = 125 bits (63), Expect = 7e-26 Identities = 102/115 (88%) Strand = Plus / Plus Query: 120 agtcgtgccccgacatggagggcatcgtccagagggccgtcaagaaggccttcgccgcag 179 |||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||| | Sbjct: 221 agtcgtgcccggacatggagggcatcgtccagcgagccgtcaagaaggccatcgccgccg 280 Query: 180 actacaccatcgccgctggcctcatccgcctcttcttccatgactttgccgtcgg 234 ||| |||| ||||| | | |||| |||||||||||||||| ||||| |||||||| Sbjct: 281 actccaccctcgcccccgccctcctccgcctcttcttccacgacttcgccgtcgg 335
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 125 bits (63), Expect = 7e-26 Identities = 102/115 (88%) Strand = Plus / Plus Query: 120 agtcgtgccccgacatggagggcatcgtccagagggccgtcaagaaggccttcgccgcag 179 |||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||| | Sbjct: 18712314 agtcgtgcccggacatggagggcatcgtccagcgagccgtcaagaaggccatcgccgccg 18712373 Query: 180 actacaccatcgccgctggcctcatccgcctcttcttccatgactttgccgtcgg 234 ||| |||| ||||| | | |||| |||||||||||||||| ||||| |||||||| Sbjct: 18712374 actccaccctcgcccccgccctcctccgcctcttcttccacgacttcgccgtcgg 18712428 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 200 ctcatccgcctcttcttccatgact 224 |||||||||||||||||||| |||| Sbjct: 26504538 ctcatccgcctcttcttccacgact 26504514
>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0055I24 Length = 155872 Score = 125 bits (63), Expect = 7e-26 Identities = 102/115 (88%) Strand = Plus / Plus Query: 120 agtcgtgccccgacatggagggcatcgtccagagggccgtcaagaaggccttcgccgcag 179 |||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||| | Sbjct: 44602 agtcgtgcccggacatggagggcatcgtccagcgagccgtcaagaaggccatcgccgccg 44661 Query: 180 actacaccatcgccgctggcctcatccgcctcttcttccatgactttgccgtcgg 234 ||| |||| ||||| | | |||| |||||||||||||||| ||||| |||||||| Sbjct: 44662 actccaccctcgcccccgccctcctccgcctcttcttccacgacttcgccgtcgg 44716
>dbj|AK108797.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C03, full insert sequence Length = 1266 Score = 125 bits (63), Expect = 7e-26 Identities = 102/115 (88%) Strand = Plus / Plus Query: 120 agtcgtgccccgacatggagggcatcgtccagagggccgtcaagaaggccttcgccgcag 179 |||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||| | Sbjct: 221 agtcgtgcccggacatggagggcatcgtccagcgagccgtcaagaaggccatcgccgccg 280 Query: 180 actacaccatcgccgctggcctcatccgcctcttcttccatgactttgccgtcgg 234 ||| |||| ||||| | | |||| |||||||||||||||| ||||| |||||||| Sbjct: 281 actccaccctcgcccccgccctcctccgcctcttcttccacgacttcgccgtcgg 335
>tpe|BN000631.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx102 gene for class III peroxidase 102 precursor, exons 1-3 Length = 1252 Score = 125 bits (63), Expect = 7e-26 Identities = 102/115 (88%) Strand = Plus / Plus Query: 120 agtcgtgccccgacatggagggcatcgtccagagggccgtcaagaaggccttcgccgcag 179 |||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||| | Sbjct: 170 agtcgtgcccggacatggagggcatcgtccagcgagccgtcaagaaggccatcgccgccg 229 Query: 180 actacaccatcgccgctggcctcatccgcctcttcttccatgactttgccgtcgg 234 ||| |||| ||||| | | |||| |||||||||||||||| ||||| |||||||| Sbjct: 230 actccaccctcgcccccgccctcctccgcctcttcttccacgacttcgccgtcgg 284
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 50.1 bits (25), Expect = 0.003 Identities = 37/41 (90%) Strand = Plus / Plus Query: 184 caccatcgccgctggcctcatccgcctcttcttccatgact 224 |||||||||||| ||| |||||||| |||||||||| |||| Sbjct: 15559066 caccatcgccgccggcatcatccgcatcttcttccacgact 15559106 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 201 tcatccgcctcttcttccatgact 224 ||||||||||||||||||| |||| Sbjct: 20343723 tcatccgcctcttcttccacgact 20343700
>dbj|AP003528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0633D04 Length = 159636 Score = 50.1 bits (25), Expect = 0.003 Identities = 37/41 (90%) Strand = Plus / Plus Query: 184 caccatcgccgctggcctcatccgcctcttcttccatgact 224 |||||||||||| ||| |||||||| |||||||||| |||| Sbjct: 48399 caccatcgccgccggcatcatccgcatcttcttccacgact 48439
>dbj|AK072945.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149C14, full insert sequence Length = 1406 Score = 50.1 bits (25), Expect = 0.003 Identities = 37/41 (90%) Strand = Plus / Plus Query: 184 caccatcgccgctggcctcatccgcctcttcttccatgact 224 |||||||||||| ||| |||||||| |||||||||| |||| Sbjct: 254 caccatcgccgccggcatcatccgcatcttcttccacgact 294
>tpe|BN000608.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx79 gene for class III peroxidase 79 precursor, exons 1-2 Length = 1245 Score = 50.1 bits (25), Expect = 0.003 Identities = 37/41 (90%) Strand = Plus / Plus Query: 184 caccatcgccgctggcctcatccgcctcttcttccatgact 224 |||||||||||| ||| |||||||| |||||||||| |||| Sbjct: 177 caccatcgccgccggcatcatccgcatcttcttccacgact 217
>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07, complete sequence Length = 151399 Score = 48.1 bits (24), Expect = 0.012 Identities = 27/28 (96%) Strand = Plus / Plus Query: 197 ggcctcatccgcctcttcttccatgact 224 ||||||||||||||||||||||| |||| Sbjct: 94590 ggcctcatccgcctcttcttccacgact 94617 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 113384 cctcatccgcctcttcttccacgact 113409 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 tcatccgcctcttcttccatgact 224 ||||||||||||||||||| |||| Sbjct: 83271 tcatccgcctcttcttccacgact 83294
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.012 Identities = 27/28 (96%) Strand = Plus / Plus Query: 197 ggcctcatccgcctcttcttccatgact 224 ||||||||||||||||||||||| |||| Sbjct: 2001713 ggcctcatccgcctcttcttccacgact 2001740 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 2020507 cctcatccgcctcttcttccacgact 2020532 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 tcatccgcctcttcttccatgact 224 ||||||||||||||||||| |||| Sbjct: 1990394 tcatccgcctcttcttccacgact 1990417
>tpe|BN000598.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx69 gene for class III peroxidase 69 precursor, exons 1-2 Length = 1108 Score = 48.1 bits (24), Expect = 0.012 Identities = 27/28 (96%) Strand = Plus / Plus Query: 197 ggcctcatccgcctcttcttccatgact 224 ||||||||||||||||||||||| |||| Sbjct: 202 ggcctcatccgcctcttcttccacgact 229
>gb|AY206409.1| Ipomoea batatas anionic peroxidase swpa4 mRNA, complete cds Length = 1283 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 |||||| ||||||||||||||||||| Sbjct: 318 cctcattcgcctcttcttccatgact 343
>emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene) Length = 1398 Score = 44.1 bits (22), Expect = 0.19 Identities = 34/38 (89%) Strand = Plus / Plus Query: 187 catcgccgctggcctcatccgcctcttcttccatgact 224 ||||||||| ||||||||||||||| |||||| |||| Sbjct: 245 catcgccgccggcctcatccgcctccacttccacgact 282
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 7947980 cctcatccgcctcttcttccacgact 7948005
>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09 Length = 160665 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 71395 cctcatccgcctcttcttccacgact 71420
>dbj|AK120246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044L23, full insert sequence Length = 1402 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 311 cctcatccgcctcttcttccacgact 336
>dbj|AK106200.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-F04, full insert sequence Length = 1383 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 308 cctcatccgcctcttcttccacgact 333
>dbj|AK104645.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G11, full insert sequence Length = 1228 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 339 cctcatccgcctcttcttccacgact 364
>dbj|AK104641.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-F02, full insert sequence Length = 1292 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 299 cctcatccgcctcttcttccacgact 324
>dbj|AK104300.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F08, full insert sequence Length = 1408 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 310 cctcatccgcctcttcttccacgact 335
>dbj|AK104219.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D07, full insert sequence Length = 1405 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 308 cctcatccgcctcttcttccacgact 333
>dbj|AK067000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091I12, full insert sequence Length = 1239 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 339 cctcatccgcctcttcttccacgact 364
>dbj|AK061553.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B10, full insert sequence Length = 1226 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 310 cctcatccgcctcttcttccacgact 335
>dbj|AK060998.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-F03, full insert sequence Length = 1408 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 310 cctcatccgcctcttcttccacgact 335
>tpe|BN000600.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx71 gene for class III peroxidase 71 precursor, exons 1-3 Length = 1736 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 180 cctcatccgcctcttcttccacgact 205
>tpe|BN000558.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx29 gene for class III peroxidase 29 precursor, exons 1-3 Length = 1184 Score = 44.1 bits (22), Expect = 0.19 Identities = 25/26 (96%) Strand = Plus / Plus Query: 199 cctcatccgcctcttcttccatgact 224 ||||||||||||||||||||| |||| Sbjct: 174 cctcatccgcctcttcttccacgact 199
>gb|AY206411.1| Ipomoea batatas anionic peroxidase swpa6 mRNA, complete cds Length = 1284 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 ctcatccgcctcttcttccatgact 224 ||||| ||||||||||||||||||| Sbjct: 320 ctcattcgcctcttcttccatgact 344
>ref|NM_183815.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1071 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 catcgccgctggcctcatccgcctc 211 ||||||||| ||||||||||||||| Sbjct: 174 catcgccgccggcctcatccgcctc 198
>ref|XM_479274.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1023 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 ctcatccgcctcttcttccatgact 224 |||||||||||||||||||| |||| Sbjct: 217 ctcatccgcctcttcttccacgact 241
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 42.1 bits (21), Expect = 0.77 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 taccgccagccgcaagactac 64 ||||||||||||||||||||| Sbjct: 90118 taccgccagccgcaagactac 90138
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 catcgccgctggcctcatccgcctc 211 ||||||||| ||||||||||||||| Sbjct: 12534446 catcgccgccggcctcatccgcctc 12534470 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||||||| |||||| |||| Sbjct: 12483065 tcgccgccggcctcatccgcctccacttccacgact 12483100
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Minus Query: 200 ctcatccgcctcttcttccatgact 224 |||||||||||||||||||| |||| Sbjct: 49809 ctcatccgcctcttcttccacgact 49785
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 catcgccgctggcctcatccgcctc 211 ||||||||| ||||||||||||||| Sbjct: 46056 catcgccgccggcctcatccgcctc 46080
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 catcgccgctggcctcatccgcctc 211 ||||||||| ||||||||||||||| Sbjct: 120061 catcgccgccggcctcatccgcctc 120085 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||||||| |||||| |||| Sbjct: 68680 tcgccgccggcctcatccgcctccacttccacgact 68715
>dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C11, full insert sequence Length = 5938 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 catcgccgctggcctcatccgcctc 211 ||||||||| ||||||||||||||| Sbjct: 236 catcgccgccggcctcatccgcctc 260
>tpe|BN000634.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx105 gene for class III peroxidase 105 precursor, exon 1 Length = 1023 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 200 ctcatccgcctcttcttccatgact 224 |||||||||||||||||||| |||| Sbjct: 217 ctcatccgcctcttcttccacgact 241
>tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx14 gene for class III peroxidase 14 precursor, exons 1-3 Length = 5620 Score = 42.1 bits (21), Expect = 0.77 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 catcgccgctggcctcatccgcctc 211 ||||||||| ||||||||||||||| Sbjct: 174 catcgccgccggcctcatccgcctc 198
>ref|XM_474448.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||| |||||||||| |||| Sbjct: 209 tcgccgccggcctcatccgtatcttcttccacgact 244
>gb|AC169511.1| Mus musculus BAC clone RP23-81P24 from chromosome 14, complete sequence Length = 252587 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tgtttatcctgccccccatg 28 |||||||||||||||||||| Sbjct: 76409 tgtttatcctgccccccatg 76390
>ref|NM_183810.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||||||| |||||| |||| Sbjct: 158 tcgccgccggcctcatccgcctccacttccacgact 193
>ref|NM_184929.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1209 Score = 40.1 bits (20), Expect = 3.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 193 cgctggcctcatccgcctcttcttccatgact 224 |||||||||||||||| | |||||||||||| Sbjct: 216 cgctggcctcatccgcatgctcttccatgact 247
>gb|BT018956.1| Zea mays clone Contig167.F mRNA sequence Length = 1302 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 actaccagccgccggcctac 79 |||||||||||||||||||| Sbjct: 967 actaccagccgccggcctac 986
>gb|BT018531.1| Zea mays clone EL01N0434A08.d mRNA sequence Length = 1267 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 actaccagccgccggcctac 79 |||||||||||||||||||| Sbjct: 745 actaccagccgccggcctac 764
>gb|AY021457.1| Oryza sativa microsatellite MRG3782 containing (TA)X26, closest to marker R44, genomic sequence Length = 252 Score = 40.1 bits (20), Expect = 3.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 193 cgctggcctcatccgcctcttcttccatgact 224 |||||||||||||||| | |||||||||||| Sbjct: 49 cgctggcctcatccgcatgctcttccatgact 80
>gb|AY019061.1| Oryza sativa microsatellite MRG1386 containing (AT)X26, closest to marker R44, genomic sequence Length = 252 Score = 40.1 bits (20), Expect = 3.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 193 cgctggcctcatccgcctcttcttccatgact 224 |||||||||||||||| | |||||||||||| Sbjct: 205 cgctggcctcatccgcatgctcttccatgact 174
>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds Length = 1282 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||||||| |||||| |||| Sbjct: 243 tcgccgccggcctcatccgcctccacttccacgact 278
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 193 cgctggcctcatccgcctcttcttccatgact 224 |||||||||||||||| | |||||||||||| Sbjct: 14319080 cgctggcctcatccgcatgctcttccatgact 14319111
>emb|X99951.1|TBRAB T.brucei rab7 gene and rab1 gene Length = 3333 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gcctcatccgcctcttcttc 217 |||||||||||||||||||| Sbjct: 1949 gcctcatccgcctcttcttc 1930
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||| |||||||||| |||| Sbjct: 81675 tcgccgccggcctcatccgtatcttcttccacgact 81710
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 40.1 bits (20), Expect = 3.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 193 cgctggcctcatccgcctcttcttccatgact 224 |||||||||||||||| | |||||||||||| Sbjct: 68309 cgctggcctcatccgcatgctcttccatgact 68340
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||| |||||||||| |||| Sbjct: 35243437 tcgccgccggcctcatccgtatcttcttccacgact 35243402
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 193 cgctggcctcatccgcctcttcttccatgact 224 |||||||||||||||| | |||||||||||| Sbjct: 14314055 cgctggcctcatccgcatgctcttccatgact 14314086
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 201 tcatccgcctcttcttccatgact 224 ||||||||||||||||||| |||| Sbjct: 67118 tcatccgcctcttcttccacgact 67095
>dbj|AK109054.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E08, full insert sequence Length = 1275 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 tcatccgcctcttcttccatgact 224 ||||||||||||||||||| |||| Sbjct: 300 tcatccgcctcttcttccacgact 323
>dbj|AK104928.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B06, full insert sequence Length = 1299 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||| |||||||||| |||| Sbjct: 298 tcgccgccggcctcatccgtatcttcttccacgact 333
>dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001H23, full insert sequence Length = 1382 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||||||| |||||| |||| Sbjct: 265 tcgccgccggcctcatccgcctccacttccacgact 300
>dbj|AK065090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001L22, full insert sequence Length = 1333 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||| |||||||||| |||| Sbjct: 299 tcgccgccggcctcatccgtatcttcttccacgact 334
>dbj|AK064619.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-D04, full insert sequence Length = 1345 Score = 40.1 bits (20), Expect = 3.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 193 cgctggcctcatccgcctcttcttccatgact 224 |||||||||||||||| | |||||||||||| Sbjct: 352 cgctggcctcatccgcatgctcttccatgact 383
>tpe|BN000616.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx87 gene for class III peroxidase 87 precursor, exons 1-3 Length = 1170 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 tcatccgcctcttcttccatgact 224 ||||||||||||||||||| |||| Sbjct: 203 tcatccgcctcttcttccacgact 226
>tpe|BN000597.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx68 gene for class III peroxidase 68 precursor, exons 1-2 Length = 1347 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 tcatccgcctcttcttccatgact 224 ||||||||||||||||||| |||| Sbjct: 215 tcatccgcctcttcttccacgact 238
>tpe|BN000590.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx61 gene for class III peroxidase 61, exons 1-2 Length = 1178 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||| |||||||||| |||| Sbjct: 209 tcgccgccggcctcatccgtatcttcttccacgact 244
>tpe|BN000575.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx46 gene for class III peroxidase 46 precursor, exons 1-2 Length = 1567 Score = 40.1 bits (20), Expect = 3.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 193 cgctggcctcatccgcctcttcttccatgact 224 |||||||||||||||| | |||||||||||| Sbjct: 216 cgctggcctcatccgcatgctcttccatgact 247
>tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx12 gene for class III peroxidase 12 precursor, exons 1-3 Length = 3928 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||||||| |||||| |||| Sbjct: 158 tcgccgccggcctcatccgcctccacttccacgact 193
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||| |||||||||| |||| Sbjct: 75372 tcgccgccggcctcatccgtatcttcttccacgact 75337
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 40.1 bits (20), Expect = 3.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 189 tcgccgctggcctcatccgcctcttcttccatgact 224 ||||||| ||||||||||| |||||||||| |||| Sbjct: 39282 tcgccgccggcctcatccgtatcttcttccacgact 39247 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,423,454 Number of Sequences: 3902068 Number of extensions: 1423454 Number of successful extensions: 41358 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41111 Number of HSP's gapped (non-prelim): 247 length of query: 237 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 215 effective length of database: 17,147,199,772 effective search space: 3686647950980 effective search space used: 3686647950980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
