ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMOT_HUMAN (Q4VCS5) Angiomotin 31 1.0
2OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-b... 28 6.5
3HR4_DROME (Q9W539) Hormone receptor 4 (dHR4) 28 6.5
4DNMT1_MOUSE (P13864) DNA (cytosine-5)-methyltransferase 1 (EC 2.... 28 8.5

>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -3

Query: 175 DEAEQEDVRQVPDPGALARGQHRQQRHHDGEQHRLRCEVGREQELQSPLQPRGNHIAA 2
           ++A Q D  ++  PG   + Q +QQ+HH    H       ++Q+ Q P Q  G   +A
Sbjct: 359 NQAHQGDHYRLSQPGLSQQQQQQQQQHHHHHHH-------QQQQQQQPQQQPGEAYSA 409



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>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind) (L(1)omb)|
            (Protein bifid)
          Length = 972

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 124  ARGQHRQQRHHDGEQHRLRCEVGREQELQSPLQPRGNH 11
            A+  H  Q HH  +QH+      ++Q  Q P QP  +H
Sbjct: 921  AQHHHHTQAHHQQQQHQSH---HQQQHHQQPAQPHPHH 955



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>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -3

Query: 211  FGVPLAEHAVGDDEAEQEDVRQVPDPGALARGQHRQQRHHDGEQHRLRCEVGREQELQSP 32
            + V   +H   + + +Q+  +Q     A  +   +QQ+H   +QH       ++Q+L SP
Sbjct: 1009 YKVKYKKHKKTNQKQQQQAAQQQQQQAAAQQQHQQQQQHQQHQQH-------QQQQLHSP 1061

Query: 31   L 29
            L
Sbjct: 1062 L 1062



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>DNMT1_MOUSE (P13864) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1)|
           (DNA methyltransferase MmuI) (DNA MTase MmuI) (MCMT)
           (M.MmuI) (Met-1)
          Length = 1620

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 199 LAEHAVGDDEAEQEDVRQVPDPGALARGQHRQQ 101
           LA     DDE   +DV ++P P  L +G+ ++Q
Sbjct: 697 LAVKEADDDEEADDDVSEMPSPKKLHQGKKKKQ 729


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,119,209
Number of Sequences: 219361
Number of extensions: 391951
Number of successful extensions: 1487
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
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