Clone Information

BLAST Search Result

Clone Name	bart09a09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AL731613.5\|OSJN00257 Oryza sativa genomic DNA, chromosome 4,...	208	5e-51
2	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	208	5e-51
3	ref\|NM_193516.1\| Oryza sativa (japonica cultivar-group), predic...	78	1e-11
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	78	1e-11
5	dbj\|AP003267.3\| Oryza sativa (japonica cultivar-group) genomic D...	78	1e-11
6	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	48	0.011
7	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	46	0.044
8	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	46	0.044
9	ref\|XM_467119.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.17
10	ref\|XM_506893.1\| PREDICTED Oryza sativa (japonica cultivar-group...	44	0.17
11	gb\|CP000353.1\| Ralstonia metallidurans CH34 megaplasmid, complet...	44	0.17
12	emb\|X68102.1\|MP34KDA Mycobacterium paratuberculosis genomic DNA ...	44	0.17
13	gb\|AF411607.1\|AF411607 Mycobacterium avium subsp. paratuberculos...	44	0.17
14	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.17
15	gb\|AF334164.1\|AF334164 Mycobacterium avium subsp. paratuberculos...	44	0.17
16	dbj\|AP004676.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.17
17	dbj\|AP005006.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.17
18	dbj\|AK073462.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.17
19	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	44	0.17
20	dbj\|AK058231.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.17
21	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	44	0.17
22	emb\|AJ307662.1\|OSA307662 Oryza sativa genomic DNA fragment, chro...	44	0.17
23	gb\|CP000143.1\| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...	42	0.68
24	gb\|AY658467.1\| Synthetic construct Peudomonas aeruginosa clone F...	42	0.68
25	emb\|AL627267.1\| Salmonella enterica serovar Typhi (Salmonella ty...	42	0.68
26	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	0.68
27	gb\|AY899214.1\| Streptomyces aizunensis strain NRRL B-11277 glyco...	42	0.68
28	gb\|AE004453.1\| Pseudomonas aeruginosa PAO1, section 14 of 529 of...	42	0.68
29	gb\|CP000026.1\| Salmonella enterica subsp. enterica serovar Parat...	42	0.68
30	dbj\|AP005124.5\| Oryza sativa (japonica cultivar-group) genomic D...	42	0.68
31	gb\|AF102556.1\|AF102556 Salmonella enteritidis outer membrane pro...	42	0.68
32	gb\|AE014613.1\| Salmonella enterica subsp. enterica serovar Typhi...	42	0.68
33	gb\|AE017220.1\| Salmonella enterica subsp. enterica serovar Chole...	42	0.68
34	ref\|XM_474809.1\| Oryza sativa (japonica cultivar-group), predic...	40	2.7
35	ref\|NM_195783.1\| Oryza sativa (japonica cultivar-group) putative...	40	2.7
36	gb\|CP000152.1\| Burkholderia sp. 383 chromosome 2, complete sequence	40	2.7
37	gb\|AE000516.2\| Mycobacterium tuberculosis CDC1551, complete genome	40	2.7
38	ref\|XM_417207.1\| PREDICTED: Gallus gallus similar to Dipeptidyl-...	40	2.7
39	ref\|XM_675419.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	40	2.7
40	gb\|AY330485.1\| Saccharopolyspora erythraea amino acid permease g...	40	2.7
41	emb\|BX842577.1\| Mycobacterium tuberculosis H37Rv complete genome...	40	2.7
42	emb\|BX248340.1\| Mycobacterium bovis subsp. bovis AF2122/97 compl...	40	2.7
43	emb\|AL939120.1\|SCO939120 Streptomyces coelicolor A3(2) complete ...	40	2.7
44	emb\|AL606449.4\|OSJN00004 Oryza sativa genomic DNA, chromosome 4,...	40	2.7
45	gb\|AY128429.1\| Drosophila melanogaster GH26723 full insert cDNA	40	2.7
46	gb\|AE011673.1\| Xanthomonas axonopodis pv. citri str. 306, secti...	40	2.7
47	gb\|CP000267.1\| Rhodoferax ferrireducens DSM 15236, complete genome	40	2.7
48	ref\|NM_165305.2\| Drosophila melanogaster CG10188-RA, transcript ...	40	2.7
49	ref\|NM_136133.2\| Drosophila melanogaster CG10188-RB, transcript ...	40	2.7
50	gb\|AC099017.1\| Drosophila melanogaster, chromosome 2L, region 37...	40	2.7
51	gb\|CP000230.1\| Rhodospirillum rubrum ATCC 11170, complete genome	40	2.7
52	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	2.7
53	gb\|AC018665.9\| Homo sapiens chromosome 17, clone RP11-449J21, co...	40	2.7
54	gb\|AC040980.14\| Homo sapiens chromosome 17, clone RP11-685I11, c...	40	2.7
55	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	2.7
56	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	2.7
57	gb\|AC119147.3\| Genomic sequence for Oryza sativa, Nipponbare str...	40	2.7
58	gb\|AF263912.1\|AF263912 Streptomyces noursei ATCC 11455 nystatin ...	40	2.7
59	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	2.7
60	gb\|AY623658.2\| Aeromicrobium erythreum putative transcriptional ...	40	2.7
61	gb\|AE003663.4\| Drosophila melanogaster chromosome 2L, section 72...	40	2.7
62	gb\|AC005428.1\|AC005428 Drosophila melanogaster DNA sequence (P1 ...	40	2.7
63	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	2.7

>emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10,
             complete sequence
          Length = 133967

 Score =  208 bits (105), Expect = 5e-51
 Identities = 174/197 (88%)
 Strand = Plus / Minus

                                                                         
Query: 14    gttcccgcgtggttgcagcgggctctggagctcttgttcccgtccaacctcgcagcgaag 73
             ||||| ||| || |||||| |||||| | |||  |||||||  |||||||||| ||||||
Sbjct: 93719 gttccggcgaggctgcagcaggctctcgcgctgctgttccctaccaacctcgccgcgaag 93660

                                                                         
Query: 74    gcggtgctgttcgccgtcgtggtggcgctgctgccgatgctgcccacgagccagggcccc 133
             || ||||||||||||||||| ||||||||||||||| | ||||| ||||||||||  |||
Sbjct: 93659 gccgtgctgttcgccgtcgtcgtggcgctgctgccgctcctgccgacgagccaggcgccc 93600

                                                                         
Query: 134   gggatctgggacctgccgcacatcctcctgctcggcctcgtcatctcctacggcgtgttc 193
              |||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 93599 aggatctgggagctgcctcacatcctcctcctcggcctcatcatctcctacggcgtgttc 93540

                              
Query: 194   ggccagaggaacgccga 210
             |||||||||||||||||
Sbjct: 93539 ggccagaggaacgccga 93523

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  208 bits (105), Expect = 5e-51
 Identities = 174/197 (88%)
 Strand = Plus / Minus

                                                                            
Query: 14       gttcccgcgtggttgcagcgggctctggagctcttgttcccgtccaacctcgcagcgaag 73
                ||||| ||| || |||||| |||||| | |||  |||||||  |||||||||| ||||||
Sbjct: 27442563 gttccggcgaggctgcagcaggctctcgcgctgctgttccctaccaacctcgccgcgaag 27442504

                                                                            
Query: 74       gcggtgctgttcgccgtcgtggtggcgctgctgccgatgctgcccacgagccagggcccc 133
                || ||||||||||||||||| ||||||||||||||| | ||||| ||||||||||  |||
Sbjct: 27442503 gccgtgctgttcgccgtcgtcgtggcgctgctgccgctcctgccgacgagccaggcgccc 27442444

                                                                            
Query: 134      gggatctgggacctgccgcacatcctcctgctcggcctcgtcatctcctacggcgtgttc 193
                 |||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 27442443 aggatctgggagctgcctcacatcctcctcctcggcctcatcatctcctacggcgtgttc 27442384

                                 
Query: 194      ggccagaggaacgccga 210
                |||||||||||||||||
Sbjct: 27442383 ggccagaggaacgccga 27442367



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 65      gcagcgaaggcggtgctgttcgccgtcgtggt 96
               ||||||| |||||||| | |||||||||||||
Sbjct: 6836245 gcagcgagggcggtgccggtcgccgtcgtggt 6836276

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>ref|NM_193516.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1164

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                      
Query: 152 cacatcctcctgctcggcctcgtcatctcctacggcgtgttcggccagaggaacgccga 210
           ||||||||| |||||| |||| |||||||||| ||||| ||||||||||||||||||||
Sbjct: 289 cacatcctcatgctcgacctcatcatctcctatggcgtcttcggccagaggaacgccga 347

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                           
Query: 152      cacatcctcctgctcggcctcgtcatctcctacggcgtgttcggccagaggaacgccga 210
                ||||||||| |||||| |||| |||||||||| ||||| ||||||||||||||||||||
Sbjct: 21303899 cacatcctcatgctcgacctcatcatctcctatggcgtcttcggccagaggaacgccga 21303841

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>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0496H05
          Length = 147817

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                        
Query: 152   cacatcctcctgctcggcctcgtcatctcctacggcgtgttcggccagaggaacgccga 210
             ||||||||| |||||| |||| |||||||||| ||||| ||||||||||||||||||||
Sbjct: 25837 cacatcctcatgctcgacctcatcatctcctatggcgtcttcggccagaggaacgccga 25779

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 83      ttcgccgtcgtggtggcgctgctg 106
               ||||||||||||||||||||||||
Sbjct: 1033949 ttcgccgtcgtggtggcgctgctg 1033926

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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 77      gtgctgttcgccgtcgtggtggcgctgctgccgat 111
               |||||| ||| || |||||||||||||||||||||
Sbjct: 5115108 gtgctgctcggcggcgtggtggcgctgctgccgat 5115142

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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 77      gtgctgttcgccgtcgtggtggcgctgctgccgat 111
               |||||| ||| || |||||||||||||||||||||
Sbjct: 4969283 gtgctgctcggcggcgtggtggcgctgctgccgat 4969317

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>ref|XM_467119.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1099

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 159 tcctgctcggcctcgtcatctcctacggcgtgttcggccaga 200
           |||| |||||||||||| ||||||| ||||| |||| |||||
Sbjct: 218 tcctcctcggcctcgtcgtctcctatggcgtcttcgcccaga 259

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>ref|XM_506893.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1003_B06.37
           mRNA
          Length = 1256

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 159 tcctgctcggcctcgtcatctcctacggcgtgttcggccaga 200
           |||| |||||||||||| ||||||| ||||| |||| |||||
Sbjct: 372 tcctcctcggcctcgtcgtctcctatggcgtcttcgcccaga 413

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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 86     gccgtcgtggtggcgctgctgccgatgctg 115
              ||||||||||||||| ||||| ||||||||
Sbjct: 400014 gccgtcgtggtggcgatgctgtcgatgctg 399985

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>emb|X68102.1|MP34KDA Mycobacterium paratuberculosis genomic DNA including ORF1, 2 and 3
          Length = 1832

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 85  cgccgtcgtggtggcgctgctg 106
           ||||||||||||||||||||||
Sbjct: 978 cgccgtcgtggtggcgctgctg 999

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>gb|AF411607.1|AF411607 Mycobacterium avium subsp. paratuberculosis 34 kDa antigen gene,
            complete cds; and unknown gene
          Length = 3200

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 85   cgccgtcgtggtggcgctgctg 106
            ||||||||||||||||||||||
Sbjct: 1056 cgccgtcgtggtggcgctgctg 1077

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 159      tcctgctcggcctcgtcatctcctacggcgtgttcggccaga 200
                |||| |||||||||||| ||||||| ||||| |||| |||||
Sbjct: 26520560 tcctcctcggcctcgtcgtctcctatggcgtcttcgcccaga 26520519

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>gb|AF334164.1|AF334164 Mycobacterium avium subsp. paratuberculosis 34 kDa protein gene,
           complete cds
          Length = 897

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 85  cgccgtcgtggtggcgctgctg 106
           ||||||||||||||||||||||
Sbjct: 237 cgccgtcgtggtggcgctgctg 258

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>dbj|AP004676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1003_B06
          Length = 131956

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                        
Query: 159    tcctgctcggcctcgtcatctcctacggcgtgttcggccaga 200
              |||| |||||||||||| ||||||| ||||| |||| |||||
Sbjct: 120476 tcctcctcggcctcgtcgtctcctatggcgtcttcgcccaga 120435

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>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0519E06
          Length = 170634

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 159   tcctgctcggcctcgtcatctcctacggcgtgttcggccaga 200
             |||| |||||||||||| ||||||| ||||| |||| |||||
Sbjct: 62941 tcctcctcggcctcgtcgtctcctatggcgtcttcgcccaga 62900

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>dbj|AK073462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042E16, full
           insert sequence
          Length = 1257

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 159 tcctgctcggcctcgtcatctcctacggcgtgttcggccaga 200
           |||| |||||||||||| ||||||| ||||| |||| |||||
Sbjct: 372 tcctcctcggcctcgtcgtctcctatggcgtcttcgcccaga 413

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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 96     tggcgctgctgccgatgctgcccacg 121
              |||||||||||||| |||||||||||
Sbjct: 895039 tggcgctgctgccggtgctgcccacg 895064



 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 98     gcgctgctgccgatgctgccc 118
              |||||||||||||||||||||
Sbjct: 311550 gcgctgctgccgatgctgccc 311530

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>dbj|AK058231.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-B12, full
           insert sequence
          Length = 1099

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 159 tcctgctcggcctcgtcatctcctacggcgtgttcggccaga 200
           |||| |||||||||||| ||||||| ||||| |||| |||||
Sbjct: 218 tcctcctcggcctcgtcgtctcctatggcgtcttcgcccaga 259

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 85     cgccgtcgtggtggcgctgctg 106
              ||||||||||||||||||||||
Sbjct: 928997 cgccgtcgtggtggcgctgctg 929018

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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                        
Query: 159    tcctgctcggcctcgtcatctcctacggcgtgttcggccaga 200
              |||| |||||||||||| ||||||| ||||| |||| |||||
Sbjct: 226323 tcctcctcggcctcgtcgtctcctatggcgtcttcgcccaga 226282

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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 87      ccgtcgtggtggcgctgctgccgatgctg 115
               ||||||||| |||||||||||| ||||||
Sbjct: 2195381 ccgtcgtggcggcgctgctgcccatgctg 2195353

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>gb|AY658467.1| Synthetic construct Peudomonas aeruginosa clone FLH052251.01F
           PA0154 gene, partial cds
          Length = 606

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 151 gcacatcctcctgctcggcctcgtc 175
           |||||||||||||||||||| ||||
Sbjct: 144 gcacatcctcctgctcggccacgtc 168

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>emb|AL627267.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 3/20
          Length = 240050

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    cgccgtcgtggtggcgctgct 105
             |||||||||||||||||||||
Sbjct: 42506 cgccgtcgtggtggcgctgct 42526

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 91      cgtggtggcgctgctgccgatgctg 115
               |||||||| ||||||||||||||||
Sbjct: 5008027 cgtggtggtgctgctgccgatgctg 5008051

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>gb|AY899214.1| Streptomyces aizunensis strain NRRL B-11277 glycosyltransferase,
              polyketide synthase type Is, acyl transferase, membrane
              protein, ABC transporter, sugar dehydratase/epimerase,
              sugar epimerase, sugar nucleotidyltransferase, sugar
              dehydratase/epimerase, thioesterase, acyl CoA ligase, amine
              oxidase, phosphopantetheinyl transferase, transcriptional
              regulator, carboxylase/carboxyltransferase,
              amidinohydrolase, amide synthetase, 5-aminolevulinate
              synthase, and acyl CoA ligase genes, complete cds; and
              unknown gene
          Length = 161719

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 79     gctgttcgccgtcgtggtggcgctg 103
              |||||||||||||| ||||||||||
Sbjct: 117372 gctgttcgccgtcgaggtggcgctg 117396

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>gb|AE004453.1| Pseudomonas aeruginosa PAO1, section 14 of 529 of the complete genome
          Length = 14568

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 151  gcacatcctcctgctcggcctcgtc 175
            |||||||||||||||||||| ||||
Sbjct: 7516 gcacatcctcctgctcggccacgtc 7540

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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      cgccgtcgtggtggcgctgct 105
               |||||||||||||||||||||
Sbjct: 2304963 cgccgtcgtggtggcgctgct 2304943

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>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0049I08
          Length = 144379

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 91    cgtggtggcgctgctgccgatgctg 115
             |||||||| ||||||||||||||||
Sbjct: 49716 cgtggtggtgctgctgccgatgctg 49740

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>gb|AF102556.1|AF102556 Salmonella enteritidis outer membrane protein (omp), lipoprotein
           (sfbA), ATP-binding protein (sfbB), integral membrane
           protein (sfbC), YbbB (ybbB), hypothetical
           transcriptional regulator (glxA1), and glyoxylate
           induced protein (glxA2) genes, complete cds; glyoxylate
           regulatory protein (glxA3) gene, partial cds; and
           unknown gene
          Length = 8719

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 85  cgccgtcgtggtggcgctgct 105
           |||||||||||||||||||||
Sbjct: 95  cgccgtcgtggtggcgctgct 115

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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      cgccgtcgtggtggcgctgct 105
               |||||||||||||||||||||
Sbjct: 2419595 cgccgtcgtggtggcgctgct 2419575

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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
              complete genome
          Length = 4755700

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 85     cgccgtcgtggtggcgctgct 105
              |||||||||||||||||||||
Sbjct: 612639 cgccgtcgtggtggcgctgct 612659

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>ref|XM_474809.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2172

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 65  gcagcgaaggcggtgctgttcgccgtcgtggt 96
           ||||||| |||||||| | |||||||||||||
Sbjct: 280 gcagcgagggcggtgccggtcgccgtcgtggt 311

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>ref|NM_195783.1| Oryza sativa (japonica cultivar-group) putative retroelement
           (OSJNBa0027A14.17), mRNA
          Length = 3552

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 65  gcagcgaaggcggtgctgttcgccgtcgtggt 96
           ||||||| |||||||| | |||||||||||||
Sbjct: 178 gcagcgagggcggtgccggtcgccgtcgtggt 209

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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 73      ggcggtgctgttcgccgtcg 92
               ||||||||||||||||||||
Sbjct: 1010243 ggcggtgctgttcgccgtcg 1010224

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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 84      tcgccgtcgtggtggcgctg 103
               ||||||||||||||||||||
Sbjct: 1960892 tcgccgtcgtggtggcgctg 1960911

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>ref|XM_417207.1| PREDICTED: Gallus gallus similar to Dipeptidyl-peptidase I
           precursor (DPP-I) (DPPI) (Cathepsin C) (Cathepsin J)
           (Dipeptidyl transferase) (LOC419014), mRNA
          Length = 2223

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 91  cgtggtggcgctgctgccgatgctgccc 118
           |||||||||| ||||| |||||||||||
Sbjct: 240 cgtggtggcggtgctggcgatgctgccc 267

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>ref|XM_675419.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7242.2), mRNA
          Length = 1641

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 156 tcctcctgctcggcctcgtc 175
           ||||||||||||||||||||
Sbjct: 536 tcctcctgctcggcctcgtc 555

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>gb|AY330485.1| Saccharopolyspora erythraea amino acid permease gene, partial cds;
             transport protein, helix-turn-helix regulator (pkeRI),
             P450 monooxygenase (pkePI), P450 monooxygenase (pkePII),
             P450 monooxygenase (pkePIII), type I PKS (pkeAI), type I
             PKS (pkeAII), and type I PKS (pkeAIII) genes, complete
             cds; pkeAIV gene, complete sequence; type I PKS,
             monooxygenases, transporter, ketoacyl-ACP synthase
             (typeII), acyl carrier protien, amino transferase, and
             DNA-binding protein genes, complete cds; and unknown genes
          Length = 68451

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 72    aggcggtgctgttcgccgtcgtggtggcgctg 103
             |||||| |||||||||||||| ||| ||||||
Sbjct: 40592 aggcggcgctgttcgccgtcgaggtcgcgctg 40623

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>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13
          Length = 347496

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     tcgccgtcgtggtggcgctg 103
              ||||||||||||||||||||
Sbjct: 238777 tcgccgtcgtggtggcgctg 238796

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>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             7/14
          Length = 291050

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tcgccgtcgtggtggcgctg 103
             ||||||||||||||||||||
Sbjct: 41432 tcgccgtcgtggtggcgctg 41451

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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   cgggatctgggacctgccgc 152
             ||||||||||||||||||||
Sbjct: 60535 cgggatctgggacctgccgc 60554

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>emb|AL606449.4|OSJN00004 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014F04,
              complete sequence
          Length = 173903

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 65     gcagcgaaggcggtgctgttcgccgtcgtggt 96
              ||||||| |||||||| | |||||||||||||
Sbjct: 114751 gcagcgagggcggtgccggtcgccgtcgtggt 114782

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>gb|AY128429.1| Drosophila melanogaster GH26723 full insert cDNA
          Length = 3674

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  cgcacatcctcctgctcggc 169
            ||||||||||||||||||||
Sbjct: 2132 cgcacatcctcctgctcggc 2113

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>gb|AE011673.1| Xanthomonas axonopodis pv. citri str. 306,  section 51 of 469 of the
            complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 85   cgccgtcgtggtggcgctgctgcc 108
            ||||||||||||||||||| ||||
Sbjct: 4457 cgccgtcgtggtggcgctggtgcc 4434

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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 87      ccgtcgtggtggcgctgctg 106
               ||||||||||||||||||||
Sbjct: 3007041 ccgtcgtggtggcgctgctg 3007060

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>ref|NM_165305.2| Drosophila melanogaster CG10188-RA, transcript variant A (CG10188),
            mRNA
          Length = 5296

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  cgcacatcctcctgctcggc 169
            ||||||||||||||||||||
Sbjct: 3774 cgcacatcctcctgctcggc 3755

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>ref|NM_136133.2| Drosophila melanogaster CG10188-RB, transcript variant B (CG10188),
            mRNA
          Length = 5210

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  cgcacatcctcctgctcggc 169
            ||||||||||||||||||||
Sbjct: 3688 cgcacatcctcctgctcggc 3669

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>gb|AC099017.1| Drosophila melanogaster, chromosome 2L, region 37D-37E, BAC clone
             BACR27M12, complete sequence
          Length = 157766

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   cgcacatcctcctgctcggc 169
             ||||||||||||||||||||
Sbjct: 90818 cgcacatcctcctgctcggc 90837

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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 71      aaggcggtgctgttcgccgt 90
               ||||||||||||||||||||
Sbjct: 3520707 aaggcggtgctgttcgccgt 3520688

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 65      gcagcgaaggcggtgctgttcgccgtcgtggt 96
               ||||||| |||||||| | |||||||||||||
Sbjct: 9011344 gcagcgagggcggtgccggtcgccgtcgtggt 9011313

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>gb|AC018665.9| Homo sapiens chromosome 17, clone RP11-449J21, complete sequence
          Length = 184393

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     cgggctctggagctcttgtt 51
              ||||||||||||||||||||
Sbjct: 122183 cgggctctggagctcttgtt 122202

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>gb|AC040980.14| Homo sapiens chromosome 17, clone RP11-685I11, complete sequence
          Length = 139484

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   cgggctctggagctcttgtt 51
            ||||||||||||||||||||
Sbjct: 8611 cgggctctggagctcttgtt 8630

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 133     cgggatctgggacctgccgc 152
               ||||||||||||||||||||
Sbjct: 2259474 cgggatctgggacctgccgc 2259455

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 82      gttcgccgtcgtggtggcgctgct 105
               |||||||| |||||||||||||||
Sbjct: 4483426 gttcgccgacgtggtggcgctgct 4483449

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>gb|AC119147.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0027A14, from chromosome 10, complete sequence
          Length = 175667

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 65    gcagcgaaggcggtgctgttcgccgtcgtggt 96
             ||||||| |||||||| | |||||||||||||
Sbjct: 99567 gcagcgagggcggtgccggtcgccgtcgtggt 99536

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>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster,
             complete sequence
          Length = 123580

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 80    ctgttcgccgtcgtggtggcgctg 103
             ||||||||||||| ||||||||||
Sbjct: 13163 ctgttcgccgtcgaggtggcgctg 13186

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 156     tcctcctgctcggcctcgtc 175
               ||||||||||||||||||||
Sbjct: 5801325 tcctcctgctcggcctcgtc 5801344



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 73      ggcggtgctgttcgccgtcgtggt 96
               ||||||||||||||||| ||||||
Sbjct: 5000831 ggcggtgctgttcgccgccgtggt 5000854

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>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative
             dehydrogenase/reductase genes, complete cds; erythromycin
             biosynthesis gene cluster, complete sequence; putative
             oxidoreductase and LipN genes, complete cds; monoamine
             oxidase gene, partial cds; and unknown gene
          Length = 61845

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 75    cggtgctgttcgccgtcgtggtggcgct 102
             ||||||||||| ||||| ||||||||||
Sbjct: 42036 cggtgctgttcaccgtcatggtggcgct 42009

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>gb|AE003663.4| Drosophila melanogaster chromosome 2L, section 72 of 83 of the complete
             sequence
          Length = 290667

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   cgcacatcctcctgctcggc 169
             ||||||||||||||||||||
Sbjct: 62437 cgcacatcctcctgctcggc 62456

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>gb|AC005428.1|AC005428 Drosophila melanogaster DNA sequence (P1 DS05231 (D342)), complete
             sequence
          Length = 87835

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   cgcacatcctcctgctcggc 169
             ||||||||||||||||||||
Sbjct: 25496 cgcacatcctcctgctcggc 25477

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 65      gcagcgaaggcggtgctgttcgccgtcgtggt 96
               ||||||| |||||||| | |||||||||||||
Sbjct: 9016483 gcagcgagggcggtgccggtcgccgtcgtggt 9016452


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,282,140
Number of Sequences: 3902068
Number of extensions: 1282140
Number of successful extensions: 96035
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92968
Number of HSP's gapped (non-prelim): 3067
length of query: 213
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 191
effective length of database: 17,147,199,772
effective search space: 3275115156452
effective search space used: 3275115156452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result