Clone Information

BLAST Search Result

Clone Name	bart09a07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa...	35	0.056
2	MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa...	35	0.056
3	DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp...	35	0.056
4	DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp...	35	0.056
5	DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp...	35	0.056
6	HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4...	33	0.16
7	CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine...	33	0.21
8	CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine...	33	0.21
9	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	32	0.28
10	SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl...	32	0.36
11	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	32	0.36
12	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	32	0.48
13	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	32	0.48
14	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	32	0.48
15	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	31	0.62
16	HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn...	31	0.62
17	HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (...	31	0.62
18	HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (...	31	0.62
19	GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon...	31	0.62
20	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	31	0.62
21	HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h...	31	0.81
22	MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musash...	30	1.1
23	MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musa...	30	1.1
24	MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa...	30	1.1
25	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	30	1.4
26	RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h...	30	1.8
27	ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn...	30	1.8
28	ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (...	30	1.8
29	RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h...	30	1.8
30	ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (...	30	1.8
31	HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ...	29	2.4
32	HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ...	29	2.4
33	BOLL_MOUSE (Q924M5) Protein boule-like	29	3.1
34	ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (...	29	3.1
35	ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ...	29	3.1
36	RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa...	29	3.1
37	ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ...	29	3.1
38	ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He...	29	3.1
39	ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (...	29	3.1
40	ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (...	29	3.1
41	ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (...	29	3.1
42	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	28	4.0
43	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	28	4.0
44	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	28	4.0
45	MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing prote...	28	4.0
46	BOLL_MACFA (Q8WP23) Protein boule-like	28	4.0
47	BOLL_HUMAN (Q8N9W6) Protein boule-like	28	4.0
48	MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote...	28	5.3
49	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	28	5.3
50	ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ...	28	5.3
51	RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h...	28	6.9
52	RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS...	28	6.9
53	RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss...	28	6.9
54	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	28	6.9
55	ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/...	27	9.0
56	RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h...	27	9.0
57	M3K9_HUMAN (P80192) Mitogen-activated protein kinase kinase kina...	27	9.0
58	ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/...	27	9.0

>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 34.7 bits (78), Expect = 0.056
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+F+ GL W+T+ DSLR  FS +G+
Sbjct: 22  KMFIGGLSWQTSPDSLRDYFSKFGE 46

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>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 34.7 bits (78), Expect = 0.056
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+F+ GL W+T+ DSLR  FS +G+
Sbjct: 22  KMFIGGLSWQTSPDSLRDYFSKFGE 46

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>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 34.7 bits (78), Expect = 0.056
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           KLFV GL W T  ++LR+ FS YG+
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGE 35

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>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 34.7 bits (78), Expect = 0.056
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           KLFV GL W T  ++LR+ FS YG+
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGE 35

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>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 34.7 bits (78), Expect = 0.056
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           KLFV GL W T  ++LR+ FS YG+
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGE 35

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>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           K+F+ GL W+T  D+LR  F  YG
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYG 183

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>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLFV GL ++TN  SL  +FS YG
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYG 30

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>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLFV GL ++TN  SL  +FS YG
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYG 30

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>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           + FV GL W TN +SL   FS +GD
Sbjct: 7   RCFVGGLAWATNDESLEQAFSQFGD 31

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>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           KLFV GL WET    LR  F  YG+
Sbjct: 57  KLFVGGLSWETTEKELRDHFGKYGE 81

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>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           KLFV GL WET  ++L   F  +GD
Sbjct: 8   KLFVGGLSWETTQENLSRYFCRFGD 32

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>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLFV GL ++TN  +L  +FS YG
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYG 30

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>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLFV GL ++TN  +L  +FS YG
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYG 30

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>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLFV GL ++TN  +L  +FS YG
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYG 30

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>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           + FV GL W TN + L+  FS +GD
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGD 31

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>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL  ETN  +L A+F  YG
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYG 32

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>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL  ETN  +L A+F  YG
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYG 32

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>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL  ETN  +L A+F  YG
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYG 32

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>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           KLF+ GL W T+  SLR  F+ +GD
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGD 60

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>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ETN D L   F+ YG
Sbjct: 6   KLFIGGLNFETNEDCLEQAFTKYG 29

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>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+F+ GL W+T    L+  FS +GD
Sbjct: 96  KMFIGGLSWDTTKKDLKDYFSKFGD 120

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>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+F+ GL W+T  + LR  F  +G+
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGE 45

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>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+F+ GL W+T  + LR  F  +G+
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGE 45

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>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+F+ GL W+T  + LR  F  +G+
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGE 45

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>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           + FV GL W T+++SL   F++YG+
Sbjct: 9   RCFVGGLAWATSNESLENAFASYGE 33

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>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  DSLR  F  +G
Sbjct: 28  KLFIGGLSFETTDDSLREHFEQWG 51

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>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  DSLR  F  +G
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWG 59

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>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  DSLR  F  +G
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWG 59

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>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  DSLR  F  +G
Sbjct: 28  KLFIGGLSFETTDDSLREHFEQWG 51

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>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  DSLR  F  +G
Sbjct: 36  KLFIGGLSFETTDDSLREHFEKWG 59

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>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+F+ GL W+T    L+  FS +G+
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGE 122

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>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+F+ GL W+T    L+  FS +G+
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGE 122

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>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           ++FV G+ ++TN + LR  FS YG
Sbjct: 34  RIFVGGIDFKTNENDLRKFFSQYG 57

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>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  +SLR+ F  +G
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWG 37

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>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+FV GL W+T+   L+  F+ +G+
Sbjct: 69  KMFVGGLSWDTSKKDLKDYFTKFGE 93

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>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL  ETN   L+A+F  +G
Sbjct: 9   KLFIGGLNRETNEKMLKAVFGKHG 32

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>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+FV GL W+T+   L+  F+ +G+
Sbjct: 76  KMFVGGLSWDTSKKDLKDYFTKFGE 100

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>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  +SLR+ F  +G
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWG 37

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>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  +SLR+ F  +G
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWG 37

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>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  +SLR+ F  +G
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWG 37

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>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  +SLR+ F  +G
Sbjct: 14  KLFIGGLSFETTDESLRSHFEQWG 37

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>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           +LFVR L + ++ + L  +FSAYG
Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYG 424

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>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           + FV GL W T+  +L   F+ YGD
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGD 33

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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           +LF+R + +E + +  R++FS YG
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYG 334

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>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1|
          Length = 769

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           +LFVR L + T S+SL + FS YG
Sbjct: 222 RLFVRNLAFITTSESLSSHFSTYG 245

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>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           ++FV G+ ++TN   LR  FS YG
Sbjct: 34  RIFVGGIDFKTNESDLRKFFSQYG 57

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>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           ++FV G+ ++TN   LR  FS YG
Sbjct: 34  RIFVGGIDFKTNESDLRKFFSQYG 57

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>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1|
          Length = 819

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           +LFVR L +ET    L  +FS +G
Sbjct: 296 RLFVRNLSYETKESELEPVFSPFG 319

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>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           + FV GL W T+  +L   FS YG+
Sbjct: 9   RCFVGGLAWATDDRALETAFSQYGE 33

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>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  +SLR  F  +G
Sbjct: 15  KLFIGGLSFETTDESLREHFEQWG 38

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>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  +SLR  +  +G
Sbjct: 10  KLFIGGLSFETTEESLRNFYEQWG 33

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>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+FV GL + T   SLR  F  +GD
Sbjct: 12  KIFVGGLPYHTTDASLRKYFEGFGD 36

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>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYGD 397
           K+FV GL + T   SLR  F  +GD
Sbjct: 33  KIFVGGLPYHTTDASLRKYFEGFGD 57

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>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           + FV GL W TN+++L   F+ +G
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFG 32

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>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  +SLR  +  +G
Sbjct: 22  KLFIGGLSFETTEESLRNYYEQWG 45

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>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  +SLR  +  +G
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWG 33

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>M3K9_HUMAN (P80192) Mitogen-activated protein kinase kinase kinase 9 (EC|
            2.7.11.25) (Mixed lineage kinase 1)
          Length = 1104

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 11   EPFLPTHTLAATPTSPS*GFALSLPPSPLMDPFSKKRKPDEN 136
            E  L + + ++   SPS G  +   PSP  DP    R PD N
Sbjct: 924  ETLLASRSPSSNGLSPSPGAGMLKTPSPSRDPGEFPRLPDPN 965

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>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 323 KLFVRGLGWETNSDSLRAIFSAYG 394
           KLF+ GL +ET  +SLR  +  +G
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWG 33


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,098,102
Number of Sequences: 219361
Number of extensions: 359628
Number of successful extensions: 1280
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result