ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart09a06 |
|---|---|
| Clone Library Name | barley_pub |
>EF1D_RABIT (P53787) Elongation factor 1-delta (EF-1-delta)| Length = 280 Score = 32.3 bits (72), Expect = 0.27 Identities = 20/45 (44%), Positives = 25/45 (55%) Frame = -1 Query: 206 RAMPPPTLVVAADAEPEEEGGSRLPGSEEEADPHGAAPRADERLR 72 R + PP AA AE +E+ L GS+EE D A R +ERLR Sbjct: 136 RQVEPPAKKAAAPAEDDEDDDIDLFGSDEEEDKEAARLR-EERLR 179
>EF1D_MOUSE (P57776) Elongation factor 1-delta (EF-1-delta)| Length = 280 Score = 32.3 bits (72), Expect = 0.27 Identities = 19/45 (42%), Positives = 25/45 (55%) Frame = -1 Query: 206 RAMPPPTLVVAADAEPEEEGGSRLPGSEEEADPHGAAPRADERLR 72 R + PPT A AE +E+ L GS+EE + AA +ERLR Sbjct: 135 RQVEPPTKKGATPAEDDEDKDIDLFGSDEEEEDKEAARLREERLR 179
>GLGB_STRAU (P52980) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 764 Score = 30.4 bits (67), Expect = 1.0 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 4/51 (7%) Frame = -1 Query: 209 DRAMPPPTLVVAADAEPEEEGGSRLPGSEEEADPHGAAP----RADERLRL 69 D+A P P AA A P+ G+R P + A PHG P A+ER RL Sbjct: 13 DKAAPEP----AAPAAPK---GARAPRARRAAPPHGVRPAPALAAEERARL 56
>EF1D_HUMAN (P29692) Elongation factor 1-delta (EF-1-delta) (Antigen NY-CO-4)| Length = 280 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = -1 Query: 206 RAMPPPTLVVAADAEPEEEGGSRLPGSEEEADPHGAAPRADERLR 72 R + PP A AE +E+ L GS+ E + AA +ERLR Sbjct: 135 RQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR 179
>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing| protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral sclerosis 2 chromosomal region candidate 9 gene protein) Length = 1302 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -1 Query: 224 TCSSLDRAMPPPTLVVAADAEPEEEGGSRLPG-SEEEADPHGAAPRADERLRL 69 T + D A+PPP + +D + GGS + G + P A P+ D+ +L Sbjct: 1246 TATMDDMALPPPPPELLSDQQKAGYGGSHISGYATLRRGPPPAPPKRDQNTKL 1298
>SNUT1_MOUSE (Q9Z315) U4/U6.U5 tri-snRNP-associated protein 1 (Squamous cell| carcinoma antigen recognized by T-cells 1) (SART-1) (mSART-1) (Hypoxia-associated factor) Length = 806 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = -1 Query: 203 AMPPP---TLVVAADAEPEEEGGSRLPGSEEEADPHGAAPRADERLRLG 66 A PPP T V D EE+GG+ PGS E + A ++L G Sbjct: 464 AQPPPSDDTRVENMDISDEEDGGALPPGSPEGLEEDEAELELQKQLEKG 512
>PAG1_MOUSE (Q3U1F9) Phosphoprotein associated with glycosphingolipid-enriched| microdomains 1 (Csk-binding protein) (Transmembrane phosphoprotein Cbp) Length = 429 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = -1 Query: 224 TCSSLDRAMPPPTLVVAADAE---PEEEGGSRLPGSEEEA 114 TCS LD PPP V D P+E GG +EE+A Sbjct: 245 TCSDLDEESPPPVPVKLLDENANLPQEGGGQ----AEEQA 280
>GDF6_BOVIN (P55106) Growth/differentiation factor 6 precursor (GDF-6)| (Cartilage-derived morphogenetic protein 2) (CDMP-2) (Fragment) Length = 436 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/41 (39%), Positives = 18/41 (43%) Frame = -1 Query: 212 LDRAMPPPTLVVAADAEPEEEGGSRLPGSEEEADPHGAAPR 90 LDR PPP P+EE R P E +P G PR Sbjct: 34 LDRQEPPP--------RPQEEPQRRPPQQPEAREPPGRGPR 66
>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)| Length = 228 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -2 Query: 148 AARACPVQRKRRTRMAPLPGQTSASGSGFAELDPVQMSRRASES 17 AAR P +R+RR R +P P T+A S + V+ RR +++ Sbjct: 150 AARISPPRRRRRRRRSPRPRATAAYRS---SAEVVERRRRVAQT 190
>SIRT6_HUMAN (Q8N6T7) Mono-ADP-ribosyltransferase sirtuin-6 (EC 2.4.2.31)| (SIR2-like protein 6) Length = 355 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%) Frame = -1 Query: 212 LDRAMPPPTLVVAADAEPEEEGGSRLPGS-------EEEADPHGAAPRADERLR 72 L+RA+PP EP+EE +R+ GS E A +G+ P + +R R Sbjct: 282 LERALPPLPRPPTPKLEPKEESPTRINGSIPAGPKQEPCAQHNGSEPASPKRER 335
>ULK1_MOUSE (O70405) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)| (Unc-51-like kinase 1) (Serine/threonine-protein kinase Unc51.1) Length = 1051 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +3 Query: 36 DICTGSSSAKPEPEALVCPGS 98 D+ ++SAKP P++L+C GS Sbjct: 367 DLVAEAASAKPPPDSLLCSGS 387
>YNM4_YEAST (P53919) Hypothetical 54.9 kDa protein in SPC98-TOM70 intergenic| region Length = 492 Score = 27.3 bits (59), Expect = 8.8 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -1 Query: 170 DAEPEEEGGSRLPGSEEEADPHGAAP 93 D E E+EGG + +E+ DP + P Sbjct: 85 DVEGEDEGGDAIENEDEDEDPSPSGP 110
>CHI1_RHINI (P29025) Chitinase 1 precursor (EC 3.2.1.14)| Length = 493 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%) Frame = -2 Query: 106 MAPLPGQTSASGSGF---AELDPVQMSRRASESSF 11 M +PG ++A+GSG+ AEL P+ S + SSF Sbjct: 249 MLTVPGSSTAAGSGYASIAELGPIVSSVISQYSSF 283 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.305 0.119 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,243,823 Number of Sequences: 219361 Number of extensions: 660802 Number of successful extensions: 1406 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1318 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1405 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (22.0 bits)
