ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart09a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472494.1| Oryza sativa (japonica cultivar-group), predic... 402 e-109
2gb|AY106545.1| Zea mays PCO091268 mRNA sequence 276 7e-71
3emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 208 1e-50
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 208 1e-50
5dbj|AK102114.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 8e-15
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
7dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
8dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
9gb|BT020430.1| Arabidopsis thaliana At1g20220 mRNA, complete cds 62 2e-06
10ref|NM_101874.1| Arabidopsis thaliana unknown protein AT1G20220 ... 62 2e-06
11gb|AF439833.1|AF439833 Arabidopsis thaliana At1g20220/T20H2_3 mR... 62 2e-06
12ref|NM_106249.2| Arabidopsis thaliana unknown protein AT1G76010 ... 60 8e-06
13gb|AY124847.1| Arabidopsis thaliana At1g76010/T4O12_22 mRNA, com... 60 8e-06
14gb|AF428441.1|AF428441 Arabidopsis thaliana At1g76010/T4O12_22 m... 60 8e-06
15gb|AY054208.1| Arabidopsis thaliana At1g76010/T4O12_22 mRNA, com... 60 8e-06
16gb|AF412102.1|AF412102 Arabidopsis thaliana At1g76010/T4O12_22 m... 60 8e-06
17gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genom... 58 3e-05
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 3e-05
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
20dbj|AK072498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
21dbj|AK071715.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
22gb|BT018549.1| Zea mays clone EL01N0438F10.d mRNA sequence 56 1e-04
23gb|AC137820.11| Medicago truncatula clone mth2-15f9, complete se... 56 1e-04
24gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome... 54 5e-04
25gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana... 54 5e-04
26gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis thali... 48 0.029
27gb|AF083744.1| Arabidopsis thaliana clone sps483 unknown mRNA 46 0.11
28gb|CP000133.1| Rhizobium etli CFN 42, complete genome 44 0.45
29ref|XM_774248.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 1.8
30emb|AL953889.9| Human DNA sequence from clone RP11-7G23 on chrom... 42 1.8
31emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chr... 42 1.8
32emb|BX005037.5| Human DNA sequence from clone RP11-34H11 on chro... 42 1.8
33emb|AL627230.15| Human DNA sequence from clone RP11-12A20 on chr... 42 1.8
34emb|AL591926.8| Human DNA sequence from clone RP11-157L3 on chro... 42 1.8
35emb|AL391987.15| Human DNA sequence from clone RP11-374M1 on chr... 42 1.8
36emb|AL162731.33| Human DNA sequence from clone RP11-292F9 on chr... 42 1.8
37emb|AL121762.13|HSJ610C12 Human DNA sequence from clone RP4-610C... 42 1.8
38emb|AL096771.11|HSJ238D15 Human DNA sequence from clone RP1-238D... 42 1.8
39emb|CR859945.1| Pongo pygmaeus mRNA; cDNA DKFZp469A0820 (from cl... 42 1.8
40gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chrom... 42 1.8
41gb|CP000265.1| Jannaschia sp. CCS1 plasmid1, complete sequence 42 1.8
42gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Ca... 42 1.8
43emb|AL118524.25|HSJ1059A9 Human DNA sequence from clone RP5-1059... 42 1.8
44gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 7.0
45ref|XM_471525.1| Oryza sativa (japonica cultivar-group), predic... 40 7.0
46gb|AC150654.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
47gb|AC114012.5| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
48gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.0
49ref|XM_590239.2| PREDICTED: Bos taurus similar to KIAA0963 (LOC5... 40 7.0
50gb|BT013828.1| Lycopersicon esculentum clone 132757F, mRNA sequence 40 7.0
51gb|AC144401.2| Didelphis virginiana clone LBNL3-270H19, complete... 40 7.0
52gb|AC145433.2| Pan troglodytes BAC clone RP43-43I4 from 7, compl... 40 7.0
53ref|XM_745861.1| Aspergillus fumigatus Af293 ATP citrate lyase (... 40 7.0
54gb|AC142317.1| Pan troglodytes BAC clone RP43-52L16 from 7, comp... 40 7.0
55gb|CP000001.1| Bacillus cereus E33L, complete genome 40 7.0
56gb|AC099665.2| Homo sapiens chromosome 3 clone RP11-15B21, compl... 40 7.0
57gb|AC099515.2| Homo sapiens chromosome 5 clone RP11-455D3, compl... 40 7.0
58gb|AC008948.8| Homo sapiens chromosome 5 clone CTD-2333K2, compl... 40 7.0
59gb|AC011359.5|AC011359 Homo sapiens chromosome 5 clone CTC-370H2... 40 7.0
60dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
61dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
62dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
63dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 7.0
64dbj|AP005506.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
65dbj|AK070253.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
66gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
67gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
68emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4,... 40 7.0
69emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.0
70gb|AC125358.4| Mus musculus BAC clone RP23-256E3 from 8, complet... 40 7.0
71emb|AL671993.7| Mouse DNA sequence from clone RP23-428E5 on chro... 40 7.0
72emb|AJ239532.1|CFA239532 Canis familiaris tRNA-derived SINE elem... 40 7.0 
>ref|XM_472494.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 789

 Score =  402 bits (203), Expect = e-109
 Identities = 308/344 (89%)
 Strand = Plus / Plus

                                                                       
Query: 174 atggatcgctaccagagggtcgagaagccgcgggaggaggcgcccatcggcgccnacgag 233
           |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct: 1   atggatcggtaccagagggtggagaagccgcgggaggaggcggccatcggcgccaacgag 60

                                                                       
Query: 234 atccgcatcacggcgcagggccgcacccgcaactacatcacctacgccctcgccctgctc 293
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atccgcatcaccgcgcagggccgcacccgcaactacatcacctacgccctcgccctgctc 120

                                                                       
Query: 294 caggaagaagctacggatgaaattgttataaaggctatgggaagggctatcaacaagaca 353
           |||||  | || || |||||||| ||||| || |||||||||||||| ||||||||||| 
Sbjct: 121 caggacaacgcgacagatgaaatcgttatcaaagctatgggaagggcgatcaacaagacc 180

                                                                       
Query: 354 gtggccattgtggagcttctcaagagaaggattgctggactccatcagaataactcantc 413
           || || |||||||||||||||||||||||||||| ||| ||||||||||||| |||  | 
Sbjct: 181 gtcgcaattgtggagcttctcaagagaaggattgttggtctccatcagaatacctctatt 240

                                                                       
Query: 414 gaatcaatcaatatnactgacacctgggaaccgttggaggaaggccttaatgttcttgag 473
           ||||||||| | || |||||||| |||||||| ||||| ||||| |||||    ||||||
Sbjct: 241 gaatcaatcgacataactgacacttgggaaccattggaagaagggcttaacacccttgag 300

                                                       
Query: 474 actactcgccatgtttccttgattaccattaccttgtcaaagaa 517
           ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 301 actacccgccatgtttccttgattaccattacattgtcaaagaa 344
to top
>gb|AY106545.1| Zea mays PCO091268 mRNA sequence
          Length = 543

 Score =  276 bits (139), Expect = 7e-71
 Identities = 250/288 (86%)
 Strand = Plus / Plus

                                                                       
Query: 174 atggatcgctaccagagggtcgagaagccgcgggaggaggcgcccatcggcgccnacgag 233
           ||||| || ||||||||||| |||||||||||||||||| | || ||||||||| |||||
Sbjct: 210 atggaccggtaccagagggtggagaagccgcgggaggagtcccctatcggcgccaacgag 269

                                                                       
Query: 234 atccgcatcacggcgcagggccgcacccgcaactacatcacctacgccctcgccctgctc 293
           |||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||
Sbjct: 270 atccgcatcacggcgcagggccggccccgcaactacatcacctatgcgctcgccctgctc 329

                                                                       
Query: 294 caggaagaagctacggatgaaattgttataaaggctatgggaagggctatcaacaagaca 353
           |||||  | || || ||||| ||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 330 caggacaatgcaacagatgacattgtcatcaaggccatgggaagggcgatcaacaagaca 389

                                                                       
Query: 354 gtggccattgtggagcttctcaagagaaggattgctggactccatcagaataactcantc 413
           || ||||| ||||||||||| ||||||||||||||||| ||||||||||||| |||  | 
Sbjct: 390 gttgccatcgtggagcttcttaagagaaggattgctggtctccatcagaatacctctatt 449

                                                           
Query: 414 gaatcaatcaatatnactgacacctgggaaccgttggaggaaggcctt 461
           ||||| ||  |||| || ||||| ||||| || ||||| |||||||||
Sbjct: 450 gaatccattgatataacagacacttgggagccattggaagaaggcctt 497
to top
>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16,
             complete sequence
          Length = 163738

 Score =  208 bits (105), Expect = 1e-50
 Identities = 119/124 (95%)
 Strand = Plus / Minus

                                                                         
Query: 174   atggatcgctaccagagggtcgagaagccgcgggaggaggcgcccatcggcgccnacgag 233
             |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct: 57148 atggatcggtaccagagggtggagaagccgcgggaggaggcggccatcggcgccaacgag 57089

                                                                         
Query: 234   atccgcatcacggcgcagggccgcacccgcaactacatcacctacgccctcgccctgctc 293
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57088 atccgcatcaccgcgcagggccgcacccgcaactacatcacctacgccctcgccctgctc 57029

                 
Query: 294   cagg 297
             ||||
Sbjct: 57028 cagg 57025



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 48/50 (96%)
 Strand = Plus / Minus

                                                               
Query: 468   cttgagactactcgccatgtttccttgattaccattaccttgtcaaagaa 517
             ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 56009 cttgagactacccgccatgtttccttgattaccattacattgtcaaagaa 55960



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                         
Query: 309   gatgaaattgttataaaggctatgggaagggctatcaacaagacagtggccattgtggag 368
             |||||||| ||||| || |||||||||||||| ||||||||||| || || |||||||||
Sbjct: 56350 gatgaaatcgttatcaaagctatgggaagggcgatcaacaagaccgtcgcaattgtggag 56291

                      
Query: 369   cttctcaag 377
             |||||||||
Sbjct: 56290 cttctcaag 56282



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                         
Query: 376   agagaaggattgctggactccatcagaataactcantcgaatcaatcaatatnactgaca 435
             |||||||||||| ||| ||||||||||||| |||  | ||||||||| | || |||||||
Sbjct: 56190 agagaaggattgttggtctccatcagaatacctctattgaatcaatcgacataactgaca 56131

                                         
Query: 436   cctgggaaccgttggaggaaggccttaa 463
             | |||||||| ||||| ||||| |||||
Sbjct: 56130 cttgggaaccattggaagaagggcttaa 56103
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  208 bits (105), Expect = 1e-50
 Identities = 119/124 (95%)
 Strand = Plus / Minus

                                                                            
Query: 174      atggatcgctaccagagggtcgagaagccgcgggaggaggcgcccatcggcgccnacgag 233
                |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct: 21243674 atggatcggtaccagagggtggagaagccgcgggaggaggcggccatcggcgccaacgag 21243615

                                                                            
Query: 234      atccgcatcacggcgcagggccgcacccgcaactacatcacctacgccctcgccctgctc 293
                ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21243614 atccgcatcaccgcgcagggccgcacccgcaactacatcacctacgccctcgccctgctc 21243555

                    
Query: 294      cagg 297
                ||||
Sbjct: 21243554 cagg 21243551



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 48/50 (96%)
 Strand = Plus / Minus

                                                                  
Query: 468      cttgagactactcgccatgtttccttgattaccattaccttgtcaaagaa 517
                ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 21242535 cttgagactacccgccatgtttccttgattaccattacattgtcaaagaa 21242486



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                            
Query: 309      gatgaaattgttataaaggctatgggaagggctatcaacaagacagtggccattgtggag 368
                |||||||| ||||| || |||||||||||||| ||||||||||| || || |||||||||
Sbjct: 21242876 gatgaaatcgttatcaaagctatgggaagggcgatcaacaagaccgtcgcaattgtggag 21242817

                         
Query: 369      cttctcaag 377
                |||||||||
Sbjct: 21242816 cttctcaag 21242808



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                            
Query: 376      agagaaggattgctggactccatcagaataactcantcgaatcaatcaatatnactgaca 435
                |||||||||||| ||| ||||||||||||| |||  | ||||||||| | || |||||||
Sbjct: 21242716 agagaaggattgttggtctccatcagaatacctctattgaatcaatcgacataactgaca 21242657

                                            
Query: 436      cctgggaaccgttggaggaaggccttaa 463
                | |||||||| ||||| ||||| |||||
Sbjct: 21242656 cttgggaaccattggaagaagggcttaa 21242629



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 30       cgcttgcttctcctcctccctcct 53
                ||||||||||| ||||||||||||
Sbjct: 11649275 cgcttgcttctgctcctccctcct 11649298
to top
>dbj|AK102114.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084H19, full
           insert sequence
          Length = 1235

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 143/176 (81%)
 Strand = Plus / Plus

                                                                       
Query: 174 atggatcgctaccagagggtcgagaagccgcgggaggaggcgcccatcggcgccnacgag 233
           |||||||| ||||||||||| ||||||||| |||||||||||||||||   |   |||||
Sbjct: 92  atggatcggtaccagagggtggagaagccgagggaggaggcgcccatcaaggagaacgag 151

                                                                       
Query: 234 atccgcatcacggcgcagggccgcacccgcaactacatcacctacgccctcgccctgctc 293
           |||||||||||  |||||||  | |  ||||||||||||||||||||   | || |||||
Sbjct: 152 atccgcatcaccacgcaggggaggatgcgcaactacatcacctacgcgaccaccttgctc 211

                                                                   
Query: 294 caggaagaagctacggatgaaattgttataaaggctatgggaagggctatcaacaa 349
           |||||  ||| | | |||||| ||||  | ||||| ||||| ||||| ||||||||
Sbjct: 212 caggataaaggttccgatgaagttgtattcaaggcaatggggagggcaatcaacaa 267
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                            
Query: 174      atggatcgctaccagagggtcgagaagccgcgggaggaggcgcccatcggcgccnacgag 233
                |||||||| ||||||||||| ||||||||| |||||||||||||||||   |   |||||
Sbjct: 21045061 atggatcggtaccagagggtggagaagccgagggaggaggcgcccatcaaggagaacgag 21045002

                                                               
Query: 234      atccgcatcacggcgcagggccgcacccgcaactacatcacctacgc 280
                |||||||||||  |||||||  | |  ||||||||||||||||||||
Sbjct: 21045001 atccgcatcaccacgcaggggaggatgcgcaactacatcacctacgc 21044955
to top
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1274F11
          Length = 171257

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                          
Query: 174    atggatcgctaccagagggtcgagaagccgcgggaggaggcgcccatcggcgccnacgag 233
              |||||||| ||||||||||| ||||||||| |||||||||||||||||   |   |||||
Sbjct: 137150 atggatcggtaccagagggtggagaagccgagggaggaggcgcccatcaaggagaacgag 137091

                                                             
Query: 234    atccgcatcacggcgcagggccgcacccgcaactacatcacctacgc 280
              |||||||||||  |||||||  | |  ||||||||||||||||||||
Sbjct: 137090 atccgcatcaccacgcaggggaggatgcgcaactacatcacctacgc 137044
to top
>dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0478E02
          Length = 140715

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                         
Query: 174   atggatcgctaccagagggtcgagaagccgcgggaggaggcgcccatcggcgccnacgag 233
             |||||||| ||||||||||| ||||||||| |||||||||||||||||   |   |||||
Sbjct: 66361 atggatcggtaccagagggtggagaagccgagggaggaggcgcccatcaaggagaacgag 66302

                                                            
Query: 234   atccgcatcacggcgcagggccgcacccgcaactacatcacctacgc 280
             |||||||||||  |||||||  | |  ||||||||||||||||||||
Sbjct: 66301 atccgcatcaccacgcaggggaggatgcgcaactacatcacctacgc 66255
to top
>gb|BT020430.1| Arabidopsis thaliana At1g20220 mRNA, complete cds
          Length = 948

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                       
Query: 324 aaggctatgggaagggctatcaacaagacagtggccattgtggagcttctcaagagaagg 383
           |||||||||||||| |||||||||||||  ||| |||| || |||||  | |||||||||
Sbjct: 151 aaggctatgggaagagctatcaacaagagtgtgaccatagttgagctgattaagagaagg 210

                              
Query: 384 attgctggactccatcaga 402
           ||| |||| || |||||||
Sbjct: 211 attcctggtcttcatcaga 229
to top
>ref|NM_101874.1| Arabidopsis thaliana unknown protein AT1G20220 mRNA, complete cds
          Length = 1366

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                       
Query: 324 aaggctatgggaagggctatcaacaagacagtggccattgtggagcttctcaagagaagg 383
           |||||||||||||| |||||||||||||  ||| |||| || |||||  | |||||||||
Sbjct: 377 aaggctatgggaagagctatcaacaagagtgtgaccatagttgagctgattaagagaagg 436

                              
Query: 384 attgctggactccatcaga 402
           ||| |||| || |||||||
Sbjct: 437 attcctggtcttcatcaga 455
to top
>gb|AF439833.1|AF439833 Arabidopsis thaliana At1g20220/T20H2_3 mRNA, complete cds
          Length = 1368

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                       
Query: 324 aaggctatgggaagggctatcaacaagacagtggccattgtggagcttctcaagagaagg 383
           |||||||||||||| |||||||||||||  ||| |||| || |||||  | |||||||||
Sbjct: 377 aaggctatgggaagagctatcaacaagagtgtgaccatagttgagctgattaagagaagg 436

                              
Query: 384 attgctggactccatcaga 402
           ||| |||| || |||||||
Sbjct: 437 attcctggtcttcatcaga 455
to top
>ref|NM_106249.2| Arabidopsis thaliana unknown protein AT1G76010 mRNA, complete cds
          Length = 1606

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 324 aaggctatgggaagggctatcaacaagacagtggccattgtggagcttctcaagagaagg 383
           ||||| |||||||| |||||||||||||| ||| ||||||| |||||  | |||||||||
Sbjct: 282 aaggcaatgggaagagctatcaacaagactgtgaccattgtagagctgattaagagaagg 341

             
Query: 384 at 385
           ||
Sbjct: 342 at 343
to top
>gb|AY124847.1| Arabidopsis thaliana At1g76010/T4O12_22 mRNA, complete cds
          Length = 1053

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 324 aaggctatgggaagggctatcaacaagacagtggccattgtggagcttctcaagagaagg 383
           ||||| |||||||| |||||||||||||| ||| ||||||| |||||  | |||||||||
Sbjct: 151 aaggcaatgggaagagctatcaacaagactgtgaccattgtagagctgattaagagaagg 210

             
Query: 384 at 385
           ||
Sbjct: 211 at 212
to top
>gb|AF428441.1|AF428441 Arabidopsis thaliana At1g76010/T4O12_22 mRNA, complete cds
          Length = 1431

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 324 aaggctatgggaagggctatcaacaagacagtggccattgtggagcttctcaagagaagg 383
           ||||| |||||||| |||||||||||||| ||| ||||||| |||||  | |||||||||
Sbjct: 282 aaggcaatgggaagagctatcaacaagactgtgaccattgtagagctgattaagagaagg 341

             
Query: 384 at 385
           ||
Sbjct: 342 at 343
to top
>gb|AY054208.1| Arabidopsis thaliana At1g76010/T4O12_22 mRNA, complete cds
          Length = 1360

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 324 aaggctatgggaagggctatcaacaagacagtggccattgtggagcttctcaagagaagg 383
           ||||| |||||||| |||||||||||||| ||| ||||||| |||||  | |||||||||
Sbjct: 277 aaggcaatgggaagagctatcaacaagactgtgaccattgtagagctgattaagagaagg 336

             
Query: 384 at 385
           ||
Sbjct: 337 at 338
to top
>gb|AF412102.1|AF412102 Arabidopsis thaliana At1g76010/T4O12_22 mRNA, complete cds
          Length = 1318

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 324 aaggctatgggaagggctatcaacaagacagtggccattgtggagcttctcaagagaagg 383
           ||||| |||||||| |||||||||||||| ||| ||||||| |||||  | |||||||||
Sbjct: 282 aaggcaatgggaagagctatcaacaagactgtgaccattgtagagctgattaagagaagg 341

             
Query: 384 at 385
           ||
Sbjct: 342 at 343
to top
>gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genomic sequence, complete
             sequence
          Length = 112892

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 229   acgagatccgcatcacggcgcagggccgcacccgcaactacatcacctacgcc 281
             |||||||||||||||| |||||||| | || |||||||||| || ||||||||
Sbjct: 18760 acgagatccgcatcaccgcgcaggggctcatccgcaactacgtctcctacgcc 18812
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 229      acgagatccgcatcacggcgcagggccgcacccgcaactacatcacctacgcc 281
                |||||||||||||||| |||||||| | || |||||||||| || ||||||||
Sbjct: 29830701 acgagatccgcatcaccgcgcaggggctcatccgcaactacgtctcctacgcc 29830649



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                           
Query: 172     ccatggatcgctaccagagggtcgagaagccgcgggaggaggc-gcc--catcggcgccn 228
               |||||||||| |||||| |||| ||||||||||||   ||||| |||  |||| |||   
Sbjct: 3546919 ccatggatcggtaccagcgggtggagaagccgcggcccgaggccgccgtcatcagcgaga 3546860

                                                                    
Query: 229     acgagatccgcatcacggcgcagggccgcacccgcaactacatcacctacgcc 281
               |||| |||||||||||  | ||||||| || |||||||||| |||||||||||
Sbjct: 3546859 acgaaatccgcatcaccacccagggcctcatccgcaactacgtcacctacgcc 3546807



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                       
Query: 324     aaggctatgggaagggctatcaacaagacagtggccattg 363
               ||||||||||||  |||||||| |||||||||||| ||||
Sbjct: 3545277 aaggctatgggacaggctatcagcaagacagtggctattg 3545238
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 229      acgagatccgcatcacggcgcagggccgcacccgcaactacatcacctacgcc 281
                |||||||||||||||| |||||||| | || |||||||||| || ||||||||
Sbjct: 29922123 acgagatccgcatcaccgcgcaggggctcatccgcaactacgtctcctacgcc 29922071



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                           
Query: 172     ccatggatcgctaccagagggtcgagaagccgcgggaggaggc-gcc--catcggcgccn 228
               |||||||||| |||||| |||| ||||||||||||   ||||| |||  |||| |||   
Sbjct: 3547030 ccatggatcggtaccagcgggtggagaagccgcggcccgaggccgccgtcatcagcgaga 3546971

                                                                    
Query: 229     acgagatccgcatcacggcgcagggccgcacccgcaactacatcacctacgcc 281
               |||| |||||||||||  | ||||||| || |||||||||| |||||||||||
Sbjct: 3546970 acgaaatccgcatcaccacccagggcctcatccgcaactacgtcacctacgcc 3546918



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                       
Query: 324     aaggctatgggaagggctatcaacaagacagtggccattg 363
               ||||||||||||  |||||||| |||||||||||| ||||
Sbjct: 3545388 aaggctatgggacaggctatcagcaagacagtggctattg 3545349
to top
>dbj|AK072498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127O11, full
           insert sequence
          Length = 1319

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 107/131 (81%), Gaps = 3/131 (2%)
 Strand = Plus / Plus

                                                                       
Query: 172 ccatggatcgctaccagagggtcgagaagccgcgggaggaggc-gcc--catcggcgccn 228
           |||||||||| |||||| |||| ||||||||||||   ||||| |||  |||| |||   
Sbjct: 126 ccatggatcggtaccagcgggtggagaagccgcggcccgaggccgccgtcatcagcgaga 185

                                                                       
Query: 229 acgagatccgcatcacggcgcagggccgcacccgcaactacatcacctacgccctcgccc 288
           |||| |||||||||||  | ||||||| || |||||||||| |||||||||||  | |||
Sbjct: 186 acgaaatccgcatcaccacccagggcctcatccgcaactacgtcacctacgccacctccc 245

                      
Query: 289 tgctccaggaa 299
           | |||||||||
Sbjct: 246 tcctccaggaa 256



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 324 aaggctatgggaagggctatcaacaagacagtggccattg 363
           ||||||||||||  |||||||| |||||||||||| ||||
Sbjct: 281 aaggctatgggacaggctatcagcaagacagtggctattg 320
to top
>dbj|AK071715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110G03, full
           insert sequence
          Length = 1460

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 229 acgagatccgcatcacggcgcagggccgcacccgcaactacatcacctacgcc 281
           |||||||||||||||| |||||||| | || |||||||||| || ||||||||
Sbjct: 236 acgagatccgcatcaccgcgcaggggctcatccgcaactacgtctcctacgcc 288
to top
>gb|BT018549.1| Zea mays clone EL01N0438F10.d mRNA sequence
          Length = 1487

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 229 acgagatccgcatcacggcgcagggccgcacccgcaacta 268
           |||||||||||||||| |||||||||| || |||||||||
Sbjct: 235 acgagatccgcatcaccgcgcagggcctcatccgcaacta 274
to top
>gb|AC137820.11| Medicago truncatula clone mth2-15f9, complete sequence
          Length = 134674

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 471   gagactactcgccatgtttccttgattaccattaccttgtcaaagaaa 518
             ||||||||||| ||||||||  ||||||| ||||| ||||||||||||
Sbjct: 96044 gagactactcgtcatgtttcgatgattacaattactttgtcaaagaaa 95997



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                           
Query: 474    actactcgccatgtttccttgattaccattaccttgtcaaagaaa 518
              |||||||| ||||||||  |||| || ||||| ||||||||||||
Sbjct: 101799 actactcgtcatgtttcaatgatcacaattactttgtcaaagaaa 101755



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                             
Query: 471   gagactactcgccatgtttccttgattaccattaccttgtcaaagaaa 518
             ||||||||||| ||||||||  |||| || |||||  |||||||||||
Sbjct: 87359 gagactactcgtcatgtttcaatgatcacaattacgctgtcaaagaaa 87312
to top
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0026H19, complete sequence
          Length = 150620

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 93/113 (82%), Gaps = 3/113 (2%)
 Strand = Plus / Minus

                                                                         
Query: 172   ccatggatcgctaccagagggtcgagaagccgcgggaggaggc-gcc--catcggcgccn 228
             |||||||||| |||||| |||| ||||||||||||   ||||| |||  |||| |||   
Sbjct: 64572 ccatggatcggtaccagcgggtggagaagccgcggcccgaggccgccgtcatcagcgaga 64513

                                                                  
Query: 229   acgagatccgcatcacggcgcagggccgcacccgcaactacatcacctacgcc 281
             |||| |||||||||||  | ||||||| || |||||||||| |||||||||||
Sbjct: 64512 acgaaatccgcatcaccacccagggcctcatccgcaactacgtcacctacgcc 64460



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 324   aaggctatgggaagggctatcaacaagacagtggccattg 363
             ||||||||||||  |||||||| |||||||||||| ||||
Sbjct: 62930 aaggctatgggacaggctatcagcaagacagtggctattg 62891
to top
>gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
             complete sequence
          Length = 95870

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 324   aaggctatgggaagggctatcaacaagacagtggccattgtggagct 370
             ||||| |||||||| |||||||||||||| ||| ||||||| |||||
Sbjct: 79107 aaggcaatgggaagagctatcaacaagactgtgaccattgtagagct 79061
to top
>gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 92710

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 324  aaggctatgggaagggctatcaacaaga 351
            |||||||||||||| |||||||||||||
Sbjct: 5198 aaggctatgggaagagctatcaacaaga 5225
to top
>gb|AF083744.1| Arabidopsis thaliana clone sps483 unknown mRNA
          Length = 945

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 324 aaggctatgggaagggctatcaacaagacagtggccattgtggagct 370
           |||||||||||||| ||||||||||| |  ||| ||||||| |||||
Sbjct: 280 aaggctatgggaagagctatcaacaaaagtgtgaccattgttgagct 326
to top
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 270     atcacctacgccctcgccctgc 291
               ||||||||||||||||||||||
Sbjct: 2994253 atcacctacgccctcgccctgc 2994274
to top
>ref|XM_774248.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_587_126381_128180) partial mRNA
          Length = 1800

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 21  atccgtctccgcttgcttctc 41
           |||||||||||||||||||||
Sbjct: 573 atccgtctccgcttgcttctc 553
to top
>emb|AL953889.9| Human DNA sequence from clone RP11-7G23 on chromosome 9 Contains six
             novel pseudogenes, the FAM27A gene for  family with
             sequence similarity 27, member A, a novel gene and five
             CpG islands, complete sequence
          Length = 160730

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    cttgcttctcctcctccctcc 52
             |||||||||||||||||||||
Sbjct: 53263 cttgcttctcctcctccctcc 53283
to top
>emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chromosome 9 Contains eight
              novel pseudogenes, two novel genes and three CpG islands,
              complete sequence
          Length = 181647

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 32     cttgcttctcctcctccctcc 52
              |||||||||||||||||||||
Sbjct: 116663 cttgcttctcctcctccctcc 116683
to top
>emb|BX005037.5| Human DNA sequence from clone RP11-34H11 on chromosome 9 Contains two CpG
              islands, complete sequence
          Length = 173181

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 32     cttgcttctcctcctccctcc 52
              |||||||||||||||||||||
Sbjct: 105355 cttgcttctcctcctccctcc 105335
to top
>emb|AL627230.15| Human DNA sequence from clone RP11-12A20 on chromosome 9 Contains six
             novel pseudogenes, the FAM27B gene for family with
             sequence similarity 27, member B, a pseudogene similar to
             part of ribosomal protein L10 (RPL10) and four CpG
             islands, complete sequence
          Length = 194246

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    cttgcttctcctcctccctcc 52
             |||||||||||||||||||||
Sbjct: 61045 cttgcttctcctcctccctcc 61065
to top
>emb|AL591926.8| Human DNA sequence from clone RP11-157L3 on chromosome 9 Contains five
             novel pseudogenes, a pseudogene similar to part of
             ribosomal protein L10 (RPL10) and two CpG islands,
             complete sequence
          Length = 182366

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    cttgcttctcctcctccctcc 52
             |||||||||||||||||||||
Sbjct: 67855 cttgcttctcctcctccctcc 67875
to top
>emb|AL391987.15| Human DNA sequence from clone RP11-374M1 on chromosome 9 Contains the
              FAM27C gene for family with sequence similarity 27, member
              C, three novel genes, five novel pseudogenes and six CpG
              islands, complete sequence
          Length = 202081

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 32     cttgcttctcctcctccctcc 52
              |||||||||||||||||||||
Sbjct: 133226 cttgcttctcctcctccctcc 133246
to top
>emb|AL162731.33| Human DNA sequence from clone RP11-292F9 on chromosome 9 Contains four
             novel genes, three novel pseudogenes and two CpG islands,
             complete sequence
          Length = 188062

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    cttgcttctcctcctccctcc 52
             |||||||||||||||||||||
Sbjct: 89255 cttgcttctcctcctccctcc 89275
to top
>emb|AL121762.13|HSJ610C12 Human DNA sequence from clone RP4-610C12 on chromosome 20 Contains the
             3' end of a novel gene, a putative novel gene, a
             pseudogene similar to part of the cystic fibrosis
             transmembrane conductance regulator (CFTR), four CpG
             islands, ESTs, STSs and GSSs, complete sequence
          Length = 164521

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    cttgcttctcctcctccctcc 52
             |||||||||||||||||||||
Sbjct: 33364 cttgcttctcctcctccctcc 33384
to top
>emb|AL096771.11|HSJ238D15 Human DNA sequence from clone RP1-238D15 on chromosome 6q12-14.3 Contains
              3' end of COL12A1 gene  for collagen, type XII, alpha 1,
              complete sequence
          Length = 112292

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 364    tggagcttctcaagagaagga 384
              |||||||||||||||||||||
Sbjct: 105088 tggagcttctcaagagaagga 105108
to top
>emb|CR859945.1| Pongo pygmaeus mRNA; cDNA DKFZp469A0820 (from clone DKFZp469A0820)
          Length = 3499

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 281  cctcgccctgctccaggaaga 301
            |||||||||||||||||||||
Sbjct: 1377 cctcgccctgctccaggaaga 1397
to top
>gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chromosome 20, complete
             sequence
          Length = 162793

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    cttgcttctcctcctccctcc 52
             |||||||||||||||||||||
Sbjct: 57335 cttgcttctcctcctccctcc 57355
to top
>gb|CP000265.1| Jannaschia sp. CCS1 plasmid1, complete sequence
          Length = 86072

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 232   agatccgcatcacggcgcagg 252
             |||||||||||||||||||||
Sbjct: 35575 agatccgcatcacggcgcagg 35555
to top
>gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 198488

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 32    cttgcttctcctcctccctcc 52
             |||||||||||||||||||||
Sbjct: 73885 cttgcttctcctcctccctcc 73865
to top
>emb|AL118524.25|HSJ1059A9 Human DNA sequence from clone RP5-1059A9 on chromosome 9. Contains two
             putative novel genes, ESTs, STSs and GSSs, complete
             sequence
          Length = 99858

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 32    cttgcttctcctcctccctcc 52
             |||||||||||||||||||||
Sbjct: 58267 cttgcttctcctcctccctcc 58247
to top
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 242     cacggcgcagggccgcaccc 261
               ||||||||||||||||||||
Sbjct: 2019525 cacggcgcagggccgcaccc 2019506
to top
>ref|XM_471525.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1236

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 30  cgcttgcttctcctcctccctcct 53
           ||||||||||| ||||||||||||
Sbjct: 138 cgcttgcttctgctcctccctcct 115
to top
>gb|AC150654.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06,
              complete sequence
          Length = 189328

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 30     cgcttgcttctcctcctccctcct 53
              ||||||||||| ||||||||||||
Sbjct: 128628 cgcttgcttctgctcctccctcct 128605
to top
>gb|AC114012.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0079H11, complete sequence
          Length = 143925

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 30   cgcttgcttctcctcctccctcct 53
            ||||||||||| ||||||||||||
Sbjct: 7950 cgcttgcttctgctcctccctcct 7927
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    cacctacgccctcgccctgc 291
              ||||||||||||||||||||
Sbjct: 950348 cacctacgccctcgccctgc 950329
to top
>ref|XM_590239.2| PREDICTED: Bos taurus similar to KIAA0963 (LOC512682), mRNA
          Length = 4579

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 268 acatcacctacgccctcgccctgc 291
           ||||||||||| ||||||||||||
Sbjct: 566 acatcacctacaccctcgccctgc 589
to top
>gb|BT013828.1| Lycopersicon esculentum clone 132757F, mRNA sequence
          Length = 2210

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 324 aaggctatgggaagggctatcaacaagacagtggccattgtgga 367
           ||||| ||||| ||||| ||||||||||| ||| | ||||||||
Sbjct: 242 aaggcaatgggcagggcaatcaacaagactgtgacaattgtgga 285
to top
>gb|AC144401.2| Didelphis virginiana clone LBNL3-270H19, complete sequence
          Length = 180378

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     gcttctcctcctccctccta 54
              ||||||||||||||||||||
Sbjct: 101517 gcttctcctcctccctccta 101536
to top
>gb|AC145433.2| Pan troglodytes BAC clone RP43-43I4 from 7, complete sequence
          Length = 179409

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   ctcaagagaaggattgctgg 391
             ||||||||||||||||||||
Sbjct: 80026 ctcaagagaaggattgctgg 80045
to top
>ref|XM_745861.1| Aspergillus fumigatus Af293 ATP citrate lyase (Afu6g10660) partial
            mRNA
          Length = 1461

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 456  ggccttaatgttcttgagac 475
            ||||||||||||||||||||
Sbjct: 1341 ggccttaatgttcttgagac 1322
to top
>gb|AC142317.1| Pan troglodytes BAC clone RP43-52L16 from 7, complete sequence
          Length = 147345

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 372    ctcaagagaaggattgctgg 391
              ||||||||||||||||||||
Sbjct: 105781 ctcaagagaaggattgctgg 105762
to top
>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 297     gaagaagctacggatgaaat 316
               ||||||||||||||||||||
Sbjct: 2937046 gaagaagctacggatgaaat 2937027
to top
>gb|AC099665.2| Homo sapiens chromosome 3 clone RP11-15B21, complete sequence
          Length = 192063

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 368    gcttctcaagagaaggattgctgg 391
              ||||||| ||||||||||||||||
Sbjct: 158947 gcttctctagagaaggattgctgg 158970
to top
>gb|AC099515.2| Homo sapiens chromosome 5 clone RP11-455D3, complete sequence
          Length = 150339

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    ttgcttctcctcctccctcc 52
             ||||||||||||||||||||
Sbjct: 83330 ttgcttctcctcctccctcc 83349
to top
>gb|AC008948.8| Homo sapiens chromosome 5 clone CTD-2333K2, complete sequence
          Length = 176656

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     ttgcttctcctcctccctcc 52
              ||||||||||||||||||||
Sbjct: 132461 ttgcttctcctcctccctcc 132442
to top
>gb|AC011359.5|AC011359 Homo sapiens chromosome 5 clone CTC-370H24, complete sequence
          Length = 195887

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    gcttctcctcctccctccta 54
             ||||||||||||||||||||
Sbjct: 68465 gcttctcctcctccctccta 68484
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 202     cgcgggaggaggcgcccatcggcg 225
               |||||||||||||| |||||||||
Sbjct: 8706637 cgcgggaggaggcgtccatcggcg 8706660
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 30       cgcttgcttctcctcctccctcct 53
                ||||||||||| ||||||||||||
Sbjct: 16142628 cgcttgcttctgctcctccctcct 16142605
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 110     ctgagctagcgagagggatt 129
               ||||||||||||||||||||
Sbjct: 2471739 ctgagctagcgagagggatt 2471720
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 280     ccctcgccctgctccaggaa 299
               ||||||||||||||||||||
Sbjct: 2163586 ccctcgccctgctccaggaa 2163605
to top
>dbj|AP005506.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0665F09
          Length = 147102

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   ctgagctagcgagagggatt 129
             ||||||||||||||||||||
Sbjct: 33368 ctgagctagcgagagggatt 33349
to top
>dbj|AK070253.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042A07, full
           insert sequence
          Length = 1373

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 30  cgcttgcttctcctcctccctcct 53
           ||||||||||| ||||||||||||
Sbjct: 796 cgcttgcttctgctcctccctcct 773
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 30       cgcttgcttctcctcctccctcct 53
                ||||||||||| ||||||||||||
Sbjct: 16232650 cgcttgcttctgctcctccctcct 16232627
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 202     cgcgggaggaggcgcccatcggcg 225
               |||||||||||||| |||||||||
Sbjct: 8706520 cgcgggaggaggcgtccatcggcg 8706543
to top
>emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09,
              complete sequence
          Length = 164911

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     cgcttgcttctcctcctccctcct 53
              ||||||||||| ||||||||||||
Sbjct: 132285 cgcttgcttctgctcctccctcct 132308
to top
>emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa0036A15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 195500

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 202    cgcgggaggaggcgcccatcggcg 225
              |||||||||||||| |||||||||
Sbjct: 135532 cgcgggaggaggcgtccatcggcg 135509
to top
>gb|AC125358.4| Mus musculus BAC clone RP23-256E3 from 8, complete sequence
          Length = 177236

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    tgcttctcctcctccctcct 53
             ||||||||||||||||||||
Sbjct: 94161 tgcttctcctcctccctcct 94180
to top
>emb|AL671993.7| Mouse DNA sequence from clone RP23-428E5 on chromosome X, complete
              sequence
          Length = 194106

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 33     ttgcttctcctcctccctcctata 56
              |||| |||||||||||||||||||
Sbjct: 108809 ttgcatctcctcctccctcctata 108832
to top
>emb|AJ239532.1|CFA239532 Canis familiaris tRNA-derived SINE element, clone D261XE10
          Length = 975

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 34 tgcttctcctcctccctcct 53
          ||||||||||||||||||||
Sbjct: 3  tgcttctcctcctccctcct 22


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,536,764
Number of Sequences: 3902068
Number of extensions: 4536764
Number of successful extensions: 91919
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91107
Number of HSP's gapped (non-prelim): 807
length of query: 518
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 495
effective length of database: 17,143,297,704
effective search space: 8485932363480
effective search space used: 8485932363480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top