ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08h09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 157 bits (79), Expect = 3e-35 Identities = 175/207 (84%) Strand = Plus / Plus Query: 89 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 148 ||||||||||||||||| ||||||||||||||||||||||||||| |||||| || Sbjct: 86 aggagggccactacatggtgtgcaagatcgccgagggtttcctgacgaaggaggcggcga 145 Query: 149 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 208 |||||||||||| |||||| || | |||||||| |||||||||||||| ||||||||| Sbjct: 146 cggcggtgaaggagctcctccccgggtgggccggcggcgagctcgcggaaacgtgctcgt 205 Query: 209 ggccggacgccgtgcggcgccagatgccgtggtccggctccctgcacttcgccgacaccc 268 || ||||| ||| |||| || | | |||||| || |||| |||||||||||||||| Sbjct: 206 gggcggacaccgagcggttccggtaccggtggtcgagccccctccacttcgccgacaccc 265 Query: 269 ccggcgactgcaagttcagctacgccc 295 ||||||||||| |||||| |||||||| Sbjct: 266 ccggcgactgccagttcaactacgccc 292
>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full insert sequence Length = 1146 Score = 157 bits (79), Expect = 3e-35 Identities = 175/207 (84%) Strand = Plus / Plus Query: 89 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 148 ||||||||||||||||| ||||||||||||||||||||||||||| |||||| || Sbjct: 112 aggagggccactacatggtgtgcaagatcgccgagggtttcctgacgaaggaggcggcga 171 Query: 149 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 208 |||||||||||| |||||| || | |||||||| |||||||||||||| ||||||||| Sbjct: 172 cggcggtgaaggagctcctccccgggtgggccggcggcgagctcgcggaaacgtgctcgt 231 Query: 209 ggccggacgccgtgcggcgccagatgccgtggtccggctccctgcacttcgccgacaccc 268 || ||||| ||| |||| || | | |||||| || |||| |||||||||||||||| Sbjct: 232 gggcggacaccgagcggttccggtaccggtggtcgagccccctccacttcgccgacaccc 291 Query: 269 ccggcgactgcaagttcagctacgccc 295 ||||||||||| |||||| |||||||| Sbjct: 292 ccggcgactgccagttcaactacgccc 318
>dbj|D83178.1| Hordeum vulgare mRNA for endonuclease, complete cds Length = 1180 Score = 143 bits (72), Expect = 4e-31 Identities = 114/128 (89%) Strand = Plus / Plus Query: 89 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 148 |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | Sbjct: 131 aggagggccactacatgacctgcaagatcgccgacggtttcctgacgagcgaggcgttga 190 Query: 149 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 208 ||| |||||||| |||||| ||| ||||||| |||||||||||||| || |||||||| Sbjct: 191 cgggggtgaaggcgctcctcccgtcgtgggccaacggcgagctcgcggaggtgtgctcgt 250 Query: 209 ggccggac 216 || ||||| Sbjct: 251 gggcggac 258 Score = 119 bits (60), Expect = 6e-24 Identities = 70/72 (97%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 237 gtggtccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgccca 296 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 279 gtggtcccgctccctgcacttcgccgacacccccggcgactgcaagttcagctacg-cca 337 Query: 297 gggactgccacg 308 |||||||||||| Sbjct: 338 gggactgccacg 349
>dbj|AB028448.1| Hordeum vulgare Bnuc1 mRNA for nuclease I, complete cds Length = 1283 Score = 143 bits (72), Expect = 4e-31 Identities = 114/128 (89%) Strand = Plus / Plus Query: 89 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 148 ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| |||| Sbjct: 159 aggaggggcactacatgacctgcaagatcgccgatggtttcctgacgagcgaggcatcgg 218 Query: 149 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 208 |||||||||||| ||||||||| ||||||| |||||||||||||| || |||| ||| Sbjct: 219 cggcggtgaaggacctcctgccgtcgtgggccaacggcgagctcgcggaggtgtgcgcgt 278 Query: 209 ggccggac 216 || ||||| Sbjct: 279 gggcggac 286 Score = 89.7 bits (45), Expect = 5e-15 Identities = 58/61 (95%), Gaps = 1/61 (1%) Strand = Plus / Plus Query: 248 ccctgcacttcgccgacacccccggcgactgcaagttcagctacgcccagggactgccac 307 ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| Sbjct: 318 ccctgcacttcgccgacacccccggtgactgcaacttcagctacg-ccagggactgccac 376 Query: 308 g 308 | Sbjct: 377 g 377
>emb|AJ311603.1|HVU311603 Hordeum vulgare mRNA for putative nuclease (bnuc2 gene) Length = 1139 Score = 117 bits (59), Expect = 2e-23 Identities = 110/127 (86%) Strand = Plus / Plus Query: 89 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 148 ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct: 138 aggaggggcactacatgacctgcaagatcgccgatggtttcctgacgaaggaggcgtcgg 197 Query: 149 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 208 ||| |||||||| ||||| ||| || |||| |||||||||||||| || |||||||| Sbjct: 198 cgggggtgaaggatctcctcccgtcgtcggccaacggcgagctcgcggaggtgtgctcgt 257 Query: 209 ggccgga 215 || |||| Sbjct: 258 gggcgga 264 Score = 61.9 bits (31), Expect = 1e-06 Identities = 53/59 (89%), Gaps = 1/59 (1%) Strand = Plus / Plus Query: 250 ctgcacttcgccgacacccccggcgactgcaagttcagctacgcccagggactgccacg 308 ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| Sbjct: 299 ctgcacttcgctgacaccccaaaagactgcaagttcagctacgccc-gggactgccacg 356
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06, complete sequence Length = 151506 Score = 115 bits (58), Expect = 9e-23 Identities = 145/174 (83%) Strand = Plus / Plus Query: 122 agggtttcctgacgggcgaggcgtcggcggcggtgaaggggctcctgccggagtgggccg 181 |||||||||||||| |||||| || |||||||||||| |||||| || | |||||||| Sbjct: 60308 agggtttcctgacgaaggaggcggcgacggcggtgaaggagctcctccccgggtgggccg 60367 Query: 182 tcggcgagctcgcggcggcgtgctcgtggccggacgccgtgcggcgccagatgccgtggt 241 |||||||||||||| ||||||||||| ||||| ||| |||| || | | ||||| Sbjct: 60368 gcggcgagctcgcggaaacgtgctcgtgggcggacaccgagcggttccggtaccggtggt 60427 Query: 242 ccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgccc 295 | || |||| ||||||||||||||||||||||||||| |||||| |||||||| Sbjct: 60428 cgagccccctccacttcgccgacacccccggcgactgccagttcaactacgccc 60481 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Plus Query: 89 aggagggccactacatgacctgcaagatcgccgagg 124 ||||||||||||||||| |||||||||||||||| Sbjct: 60190 aggagggccactacatggtgtgcaagatcgccgagg 60225
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 115 bits (58), Expect = 9e-23 Identities = 145/174 (83%) Strand = Plus / Plus Query: 122 agggtttcctgacgggcgaggcgtcggcggcggtgaaggggctcctgccggagtgggccg 181 |||||||||||||| |||||| || |||||||||||| |||||| || | |||||||| Sbjct: 33288047 agggtttcctgacgaaggaggcggcgacggcggtgaaggagctcctccccgggtgggccg 33288106 Query: 182 tcggcgagctcgcggcggcgtgctcgtggccggacgccgtgcggcgccagatgccgtggt 241 |||||||||||||| ||||||||||| ||||| ||| |||| || | | ||||| Sbjct: 33288107 gcggcgagctcgcggaaacgtgctcgtgggcggacaccgagcggttccggtaccggtggt 33288166 Query: 242 ccggctccctgcacttcgccgacacccccggcgactgcaagttcagctacgccc 295 | || |||| ||||||||||||||||||||||||||| |||||| |||||||| Sbjct: 33288167 cgagccccctccacttcgccgacacccccggcgactgccagttcaactacgccc 33288220 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Plus Query: 89 aggagggccactacatgacctgcaagatcgccgagg 124 ||||||||||||||||| |||||||||||||||| Sbjct: 33287929 aggagggccactacatggtgtgcaagatcgccgagg 33287964
>ref|XM_550001.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1290 Score = 48.1 bits (24), Expect = 0.018 Identities = 45/52 (86%) Strand = Plus / Plus Query: 140 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 191 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 177 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 228
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.018 Identities = 45/52 (86%) Strand = Plus / Plus Query: 140 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 191 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 1565424 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 1565475
>dbj|AP002538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408F06 Length = 137462 Score = 48.1 bits (24), Expect = 0.018 Identities = 45/52 (86%) Strand = Plus / Plus Query: 140 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 191 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 2655 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 2706
>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0409B08 Length = 134673 Score = 48.1 bits (24), Expect = 0.018 Identities = 45/52 (86%) Strand = Plus / Plus Query: 140 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 191 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 131072 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 131123
>dbj|AK071917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I09, full insert sequence Length = 3171 Score = 48.1 bits (24), Expect = 0.018 Identities = 45/52 (86%) Strand = Plus / Minus Query: 140 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 191 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 134 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 83
>dbj|AK059608.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F03, full insert sequence Length = 1290 Score = 48.1 bits (24), Expect = 0.018 Identities = 45/52 (86%) Strand = Plus / Plus Query: 140 aggcgtcggcggcggtgaaggggctcctgccggagtgggccgtcggcgagct 191 ||||| ||||||||||| ||| ||| |||||||||| ||||| ||| ||||| Sbjct: 177 aggcggcggcggcggtggaggagctgctgccggagtcggccggcggggagct 228
>gb|AY105439.1| Zea mays PCO064225 mRNA sequence Length = 1193 Score = 48.1 bits (24), Expect = 0.018 Identities = 102/128 (79%) Strand = Plus / Plus Query: 89 aggagggccactacatgacctgcaagatcgccgagggtttcctgacgggcgaggcgtcgg 148 ||||||||||| |||| |||||||||||||||| | |||| ||| ||||| ||| Sbjct: 208 aggagggccacatcatggtctgcaagatcgccgagaagtacctgtcggagaaggcggcgg 267 Query: 149 cggcggtgaaggggctcctgccggagtgggccgtcggcgagctcgcggcggcgtgctcgt 208 |||||||| ||| ||| |||||||||| ||| | ||| ||||| || ||| |||| ||| Sbjct: 268 cggcggtgcaggcgctgctgccggagtcggcgggcggggagctgtcgacggtgtgcccgt 327 Query: 209 ggccggac 216 || ||||| Sbjct: 328 gggcggac 335
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 136 ggcgaggcgtcggcggcggtga 157 |||||||||||||||||||||| Sbjct: 23397164 ggcgaggcgtcggcggcggtga 23397185 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 256 ttcgccgacacccccggcgactgca 280 ||||||| ||||||||||||||||| Sbjct: 5924436 ttcgccgtcacccccggcgactgca 5924460
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 91 gagggccactacatgacctgcaagat 116 |||||||||||||| ||||||||||| Sbjct: 28863210 gagggccactacattacctgcaagat 28863235 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 cgtcggcggcggtgaaggggc 163 ||||||||||||||||||||| Sbjct: 7803216 cgtcggcggcggtgaaggggc 7803236
>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1199_H01 Length = 107252 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 136 ggcgaggcgtcggcggcggtga 157 |||||||||||||||||||||| Sbjct: 78388 ggcgaggcgtcggcggcggtga 78409
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 ccggctgcttcaggccgtcctc 33 |||||||||||||||||||||| Sbjct: 5488685 ccggctgcttcaggccgtcctc 5488664
>dbj|AP004278.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468G03 Length = 143918 Score = 44.1 bits (22), Expect = 0.28 Identities = 25/26 (96%) Strand = Plus / Plus Query: 91 gagggccactacatgacctgcaagat 116 |||||||||||||| ||||||||||| Sbjct: 13254 gagggccactacattacctgcaagat 13279
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 136 ggcgaggcgtcggcggcggtga 157 |||||||||||||||||||||| Sbjct: 17061 ggcgaggcgtcggcggcggtga 17082
>ref|XM_477103.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2292 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 256 ttcgccgacacccccggcgactgca 280 ||||||| ||||||||||||||||| Sbjct: 1046 ttcgccgtcacccccggcgactgca 1022
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 tcggcggcggtgaaggggctc 165 ||||||||||||||||||||| Sbjct: 3385402 tcggcggcggtgaaggggctc 3385382
>ref|XM_284542.6| PREDICTED: Mus musculus hypothetical protein LOC620538 (LOC620538), mRNA Length = 5131 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 tcggcgagctcgcggcggcgtgctc 206 |||||||||||||||||||| |||| Sbjct: 100 tcggcgagctcgcggcggcgcgctc 76
>dbj|AK079552.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230061D21 product:hypothetical TPR repeat/Ankyrin-repeat/Ankyrin repeat region circular profile/Yeast DNA-binding domain containing protein, full insert sequence Length = 2845 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 tcggcgagctcgcggcggcgtgctc 206 |||||||||||||||||||| |||| Sbjct: 101 tcggcgagctcgcggcggcgcgctc 77
>gb|AC126677.3| Mus musculus BAC clone RP24-156D14 from chromosome 9, complete sequence Length = 152468 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 182 tcggcgagctcgcggcggcgtgctc 206 |||||||||||||||||||| |||| Sbjct: 37471 tcggcgagctcgcggcggcgcgctc 37495
>dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0431E05 Length = 146091 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 cgtcggcggcggtgaaggggc 163 ||||||||||||||||||||| Sbjct: 17598 cgtcggcggcggtgaaggggc 17618
>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06 Length = 161851 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 cgtcggcggcggtgaaggggc 163 ||||||||||||||||||||| Sbjct: 115714 cgtcggcggcggtgaaggggc 115734
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 256 ttcgccgacacccccggcgactgca 280 ||||||| ||||||||||||||||| Sbjct: 66884 ttcgccgtcacccccggcgactgca 66908
>dbj|AK120944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N02, full insert sequence Length = 2827 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 256 ttcgccgacacccccggcgactgca 280 ||||||| ||||||||||||||||| Sbjct: 1276 ttcgccgtcacccccggcgactgca 1252
>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence Length = 114045 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cggcggcggtgaaggggctc 165 |||||||||||||||||||| Sbjct: 24228 cggcggcggtgaaggggctc 24247 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cggcggcggtgaaggggctc 165 |||||||||||||||||||| Sbjct: 23412 cggcggcggtgaaggggctc 23431
>gb|AC136228.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0672D07, complete sequence Length = 136465 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 ggcgagctcgcggcggcgtg 203 |||||||||||||||||||| Sbjct: 111956 ggcgagctcgcggcggcgtg 111975
>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21, complete sequence Length = 135750 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ggcgaggcgtcggcggcggtgaag 159 ||||||||| |||||||||||||| Sbjct: 31052 ggcgaggcggcggcggcggtgaag 31029
>ref|XM_362563.1| Magnaporthe grisea 70-15 hypothetical protein (MG08146.4) partial mRNA Length = 1659 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gacctgcaagatcgccgagg 124 |||||||||||||||||||| Sbjct: 1632 gacctgcaagatcgccgagg 1651
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 actgcaagttcagctacgcc 294 |||||||||||||||||||| Sbjct: 112943 actgcaagttcagctacgcc 112924
>emb|CR956405.10| Pig DNA sequence from clone CH242-240K6 on chromosome 17, complete sequence Length = 135681 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 gctgcttcaggccgtcctcc 34 |||||||||||||||||||| Sbjct: 28464 gctgcttcaggccgtcctcc 28445
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 acgccgtgcggcgccagatg 234 |||||||||||||||||||| Sbjct: 3428086 acgccgtgcggcgccagatg 3428067
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 ggccgtcggcgagctcgcgg 196 |||||||||||||||||||| Sbjct: 2769018 ggccgtcggcgagctcgcgg 2769037
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 actgcaagttcagctacgcc 294 |||||||||||||||||||| Sbjct: 29334286 actgcaagttcagctacgcc 29334267 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ggcgaggcgtcggcggcggtgaag 159 ||||||||| |||||||||||||| Sbjct: 21778643 ggcgaggcggcggcggcggtgaag 21778620 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 ggcgagctcgcggcggcgtg 203 |||||||||||||||||||| Sbjct: 4357349 ggcgagctcgcggcggcgtg 4357368
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 agatcgccgagggtttcctg 132 |||||||||||||||||||| Sbjct: 17310943 agatcgccgagggtttcctg 17310924
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 ggcgtcggcggcggtgaagg 160 |||||||||||||||||||| Sbjct: 1406836 ggcgtcggcggcggtgaagg 1406817
>dbj|AP005317.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0579G08 Length = 164452 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 agatcgccgagggtttcctg 132 |||||||||||||||||||| Sbjct: 83626 agatcgccgagggtttcctg 83607
>dbj|AK106805.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C03, full insert sequence Length = 935 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ggcgagctcgcggcggcgtg 203 |||||||||||||||||||| Sbjct: 316 ggcgagctcgcggcggcgtg 297
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 tcggcgagctcgcggcggcg 201 |||||||||||||||||||| Sbjct: 54079 tcggcgagctcgcggcggcg 54060
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 248 ccctgcacttcgccgacacccccggcga 275 |||||| |||||||| |||||||||||| Sbjct: 488293 ccctgcgcttcgccgtcacccccggcga 488266 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,604,018 Number of Sequences: 3902068 Number of extensions: 1604018 Number of successful extensions: 37325 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36196 Number of HSP's gapped (non-prelim): 1126 length of query: 328 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 306 effective length of database: 17,147,199,772 effective search space: 5247043130232 effective search space used: 5247043130232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
