ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08h06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 192 bits (97), Expect = 7e-46 Identities = 157/177 (88%) Strand = Plus / Minus Query: 290 gcagatgaaccttgcgtttgcgaaatccaccaagtggtgggaaaagggtctgaagcccaa 349 ||||||||| || |||||||||||| |||| ||||||||||| ||||| || ||||||| Sbjct: 11893935 gcagatgaatctcgcgtttgcgaaagccacgaagtggtgggagaagggattgcagcccaa 11893876 Query: 350 catgagggagatcgagtccgcccaggacctcgtcgactcgttggctaacgccggcgacag 409 |||| ||||| |||||||||| || |||||||||||||| ||| | ||||||||||||| Sbjct: 11893875 catgcgggaggtcgagtccgcgcaagacctcgtcgactccttgaccaacgccggcgacaa 11893816 Query: 410 gctcgtcgttgttgacttcttctcccctggctgcggcggctgccgtgccctccaccc 466 |||||| | || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11893815 tctcgtcatcgtcgacttcttctcccctggctgcggcggctgccgtgccctccaccc 11893759 Score = 40.1 bits (20), Expect = 6.3 Identities = 71/88 (80%) Strand = Plus / Minus Query: 187 cggcggtgcggatcggcaggaaaagcccgtttcttggcgctaggctcacggtcggtccca 246 ||||| ||||||||||||||| ||||| || || ||| ||||| |||| || || | Sbjct: 11894258 cggcgttgcggatcggcaggaggagccccttcctcggccggaggctggcggttgggccga 11894199 Query: 247 ggagatccaagctcgttccccggaatct 274 ||||||||| || ||| ||||||||||| Sbjct: 11894198 ggagatccaggcccgtgccccggaatct 11894171
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 192 bits (97), Expect = 7e-46 Identities = 157/177 (88%) Strand = Plus / Minus Query: 290 gcagatgaaccttgcgtttgcgaaatccaccaagtggtgggaaaagggtctgaagcccaa 349 ||||||||| || |||||||||||| |||| ||||||||||| ||||| || ||||||| Sbjct: 11890698 gcagatgaatctcgcgtttgcgaaagccacgaagtggtgggagaagggattgcagcccaa 11890639 Query: 350 catgagggagatcgagtccgcccaggacctcgtcgactcgttggctaacgccggcgacag 409 |||| ||||| |||||||||| || |||||||||||||| ||| | ||||||||||||| Sbjct: 11890638 catgcgggaggtcgagtccgcgcaagacctcgtcgactccttgaccaacgccggcgacaa 11890579 Query: 410 gctcgtcgttgttgacttcttctcccctggctgcggcggctgccgtgccctccaccc 466 |||||| | || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11890578 tctcgtcatcgtcgacttcttctcccctggctgcggcggctgccgtgccctccaccc 11890522 Score = 40.1 bits (20), Expect = 6.3 Identities = 71/88 (80%) Strand = Plus / Minus Query: 187 cggcggtgcggatcggcaggaaaagcccgtttcttggcgctaggctcacggtcggtccca 246 ||||| ||||||||||||||| ||||| || || ||| ||||| |||| || || | Sbjct: 11891021 cggcgttgcggatcggcaggaggagccccttcctcggccggaggctggcggttgggccga 11890962 Query: 247 ggagatccaagctcgttccccggaatct 274 ||||||||| || ||| ||||||||||| Sbjct: 11890961 ggagatccaggcccgtgccccggaatct 11890934
>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0035J18, from chromsome 3, complete sequence Length = 162711 Score = 192 bits (97), Expect = 7e-46 Identities = 157/177 (88%) Strand = Plus / Plus Query: 290 gcagatgaaccttgcgtttgcgaaatccaccaagtggtgggaaaagggtctgaagcccaa 349 ||||||||| || |||||||||||| |||| ||||||||||| ||||| || ||||||| Sbjct: 16718 gcagatgaatctcgcgtttgcgaaagccacgaagtggtgggagaagggattgcagcccaa 16777 Query: 350 catgagggagatcgagtccgcccaggacctcgtcgactcgttggctaacgccggcgacag 409 |||| ||||| |||||||||| || |||||||||||||| ||| | ||||||||||||| Sbjct: 16778 catgcgggaggtcgagtccgcgcaagacctcgtcgactccttgaccaacgccggcgacaa 16837 Query: 410 gctcgtcgttgttgacttcttctcccctggctgcggcggctgccgtgccctccaccc 466 |||||| | || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16838 tctcgtcatcgtcgacttcttctcccctggctgcggcggctgccgtgccctccaccc 16894 Score = 40.1 bits (20), Expect = 6.3 Identities = 71/88 (80%) Strand = Plus / Plus Query: 187 cggcggtgcggatcggcaggaaaagcccgtttcttggcgctaggctcacggtcggtccca 246 ||||| ||||||||||||||| ||||| || || ||| ||||| |||| || || | Sbjct: 16395 cggcgttgcggatcggcaggaggagccccttcctcggccggaggctggcggttgggccga 16454 Query: 247 ggagatccaagctcgttccccggaatct 274 ||||||||| || ||| ||||||||||| Sbjct: 16455 ggagatccaggcccgtgccccggaatct 16482
>gb|AY108895.1| Zea mays PCO149879 mRNA sequence Length = 628 Score = 151 bits (76), Expect = 2e-33 Identities = 142/164 (86%) Strand = Plus / Plus Query: 294 atgaaccttgcgtttgcgaaatccaccaagtggtgggaaaagggtctgaagcccaacatg 353 |||||||||||| ||| |||||| | | ||||||||| ||||| || ||||||||||| Sbjct: 306 atgaaccttgcgcttgggaaatcgatgaggtggtgggagaaggggttgcagcccaacatg 365 Query: 354 agggagatcgagtccgcccaggacctcgtcgactcgttggctaacgccggcgacaggctc 413 | ||||||||||||||||| ||||| ||||| | ||| | |||||||||||||||||| Sbjct: 366 cgtgagatcgagtccgcccaagaccttgtcgatgctttgaccaacgccggcgacaggctc 425 Query: 414 gtcgttgttgacttcttctcccctggctgcggcggctgccgtgc 457 ||||| || ||||||||||| ||||||||||||||||||||||| Sbjct: 426 gtcgtcgtcgacttcttctctcctggctgcggcggctgccgtgc 469 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 90 aaggggaccgtggtctctccgtgcggca 117 ||||||| |||||| ||||||||||||| Sbjct: 111 aaggggagcgtggtgtctccgtgcggca 138
>gb|AY108019.1| Zea mays PCO149878 mRNA sequence Length = 668 Score = 145 bits (73), Expect = 1e-31 Identities = 148/173 (85%) Strand = Plus / Plus Query: 294 atgaaccttgcgtttgcgaaatccaccaagtggtgggaaaagggtctgaagcccaacatg 353 |||||||||||| ||| |||||| | | ||||||||| ||||| || ||||||||||| Sbjct: 319 atgaaccttgcgattgggaaatcaatgaggtggtgggagaaggggttgcagcccaacatg 378 Query: 354 agggagatcgagtccgcccaggacctcgtcgactcgttggctaacgccggcgacaggctc 413 | ||||||||||||||||| ||||| || || || || | ||||||||||| |||||| Sbjct: 379 cgtgagatcgagtccgcccaagaccttgtagattccttaaccaacgccggcgagaggctc 438 Query: 414 gtcgttgttgacttcttctcccctggctgcggcggctgccgtgccctccaccc 466 ||||| || ||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 439 gtcgtcgtcgacttcttctcccctggctgcggcggctgccgtgctcttcaccc 491
>gb|BT018452.1| Zea mays clone EL01N0408A12.d mRNA sequence Length = 1457 Score = 143 bits (72), Expect = 6e-31 Identities = 141/164 (85%) Strand = Plus / Plus Query: 294 atgaaccttgcgtttgcgaaatccaccaagtggtgggaaaagggtctgaagcccaacatg 353 |||||||||||| ||| |||||| | | ||||||||| ||||| || |||| |||||| Sbjct: 298 atgaaccttgcgcttgggaaatcgatgaggtggtgggagaaggggttgcagcctaacatg 357 Query: 354 agggagatcgagtccgcccaggacctcgtcgactcgttggctaacgccggcgacaggctc 413 | ||||||||||||||||| ||||| ||||| | ||| | |||||||||||||||||| Sbjct: 358 cgtgagatcgagtccgcccaagaccttgtcgatgctttgaccaacgccggcgacaggctc 417 Query: 414 gtcgttgttgacttcttctcccctggctgcggcggctgccgtgc 457 ||||| || ||||||||||| ||||||||||||||||||||||| Sbjct: 418 gtcgtcgtcgacttcttctctcctggctgcggcggctgccgtgc 461 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 90 aaggggaccgtggtctctccgtgcggca 117 ||||||| |||||| ||||||||||||| Sbjct: 103 aaggggagcgtggtgtctccgtgcggca 130
>ref|XM_479574.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1167 Score = 119 bits (60), Expect = 8e-24 Identities = 123/144 (85%) Strand = Plus / Plus Query: 323 gtggtgggaaaagggtctgaagcccaacatgagggagatcgagtccgcccaggacctcgt 382 ||||||||| ||| | ||| ||||||||||||||||||||||||| || || ||||||| Sbjct: 375 gtggtgggagaagtgcctgcagcccaacatgagggagatcgagtcggcgcaagacctcgc 434 Query: 383 cgactcgttggctaacgccggcgacaggctcgtcgttgttgacttcttctcccctggctg 442 |||||| | ||||||||||||| ||||||||| || |||||||||||||| ||||| Sbjct: 435 cgactccctcctcaacgccggcgacaagctcgtcgtcgtcgacttcttctccccgggctg 494 Query: 443 cggcggctgccgtgccctccaccc 466 ||| |||||||| ||||| ||||| Sbjct: 495 cggtggctgccgcgccctacaccc 518
>ref|XM_507414.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0060O17.14 mRNA Length = 1184 Score = 119 bits (60), Expect = 8e-24 Identities = 123/144 (85%) Strand = Plus / Plus Query: 323 gtggtgggaaaagggtctgaagcccaacatgagggagatcgagtccgcccaggacctcgt 382 ||||||||| ||| | ||| ||||||||||||||||||||||||| || || ||||||| Sbjct: 392 gtggtgggagaagtgcctgcagcccaacatgagggagatcgagtcggcgcaagacctcgc 451 Query: 383 cgactcgttggctaacgccggcgacaggctcgtcgttgttgacttcttctcccctggctg 442 |||||| | ||||||||||||| ||||||||| || |||||||||||||| ||||| Sbjct: 452 cgactccctcctcaacgccggcgacaagctcgtcgtcgtcgacttcttctccccgggctg 511 Query: 443 cggcggctgccgtgccctccaccc 466 ||| |||||||| ||||| ||||| Sbjct: 512 cggtggctgccgcgccctacaccc 535
>ref|XM_506576.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0060O17.14 mRNA Length = 1201 Score = 119 bits (60), Expect = 8e-24 Identities = 123/144 (85%) Strand = Plus / Plus Query: 323 gtggtgggaaaagggtctgaagcccaacatgagggagatcgagtccgcccaggacctcgt 382 ||||||||| ||| | ||| ||||||||||||||||||||||||| || || ||||||| Sbjct: 390 gtggtgggagaagtgcctgcagcccaacatgagggagatcgagtcggcgcaagacctcgc 449 Query: 383 cgactcgttggctaacgccggcgacaggctcgtcgttgttgacttcttctcccctggctg 442 |||||| | ||||||||||||| ||||||||| || |||||||||||||| ||||| Sbjct: 450 cgactccctcctcaacgccggcgacaagctcgtcgtcgtcgacttcttctccccgggctg 509 Query: 443 cggcggctgccgtgccctccaccc 466 ||| |||||||| ||||| ||||| Sbjct: 510 cggtggctgccgcgccctacaccc 533
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 119 bits (60), Expect = 8e-24 Identities = 123/144 (85%) Strand = Plus / Minus Query: 323 gtggtgggaaaagggtctgaagcccaacatgagggagatcgagtccgcccaggacctcgt 382 ||||||||| ||| | ||| ||||||||||||||||||||||||| || || ||||||| Sbjct: 28959091 gtggtgggagaagtgcctgcagcccaacatgagggagatcgagtcggcgcaagacctcgc 28959032 Query: 383 cgactcgttggctaacgccggcgacaggctcgtcgttgttgacttcttctcccctggctg 442 |||||| | ||||||||||||| ||||||||| || |||||||||||||| ||||| Sbjct: 28959031 cgactccctcctcaacgccggcgacaagctcgtcgtcgtcgacttcttctccccgggctg 28958972 Query: 443 cggcggctgccgtgccctccaccc 466 ||| |||||||| ||||| ||||| Sbjct: 28958971 cggtggctgccgcgccctacaccc 28958948
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17 Length = 180015 Score = 119 bits (60), Expect = 8e-24 Identities = 123/144 (85%) Strand = Plus / Minus Query: 323 gtggtgggaaaagggtctgaagcccaacatgagggagatcgagtccgcccaggacctcgt 382 ||||||||| ||| | ||| ||||||||||||||||||||||||| || || ||||||| Sbjct: 76628 gtggtgggagaagtgcctgcagcccaacatgagggagatcgagtcggcgcaagacctcgc 76569 Query: 383 cgactcgttggctaacgccggcgacaggctcgtcgttgttgacttcttctcccctggctg 442 |||||| | ||||||||||||| ||||||||| || |||||||||||||| ||||| Sbjct: 76568 cgactccctcctcaacgccggcgacaagctcgtcgtcgtcgacttcttctccccgggctg 76509 Query: 443 cggcggctgccgtgccctccaccc 466 ||| |||||||| ||||| ||||| Sbjct: 76508 cggtggctgccgcgccctacaccc 76485
>dbj|AK105051.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C01, full insert sequence Length = 1233 Score = 119 bits (60), Expect = 8e-24 Identities = 123/144 (85%) Strand = Plus / Plus Query: 323 gtggtgggaaaagggtctgaagcccaacatgagggagatcgagtccgcccaggacctcgt 382 ||||||||| ||| | ||| ||||||||||||||||||||||||| || || ||||||| Sbjct: 422 gtggtgggagaagtgcctgcagcccaacatgagggagatcgagtcggcgcaagacctcgc 481 Query: 383 cgactcgttggctaacgccggcgacaggctcgtcgttgttgacttcttctcccctggctg 442 |||||| | ||||||||||||| ||||||||| || |||||||||||||| ||||| Sbjct: 482 cgactccctcctcaacgccggcgacaagctcgtcgtcgtcgacttcttctccccgggctg 541 Query: 443 cggcggctgccgtgccctccaccc 466 ||| |||||||| ||||| ||||| Sbjct: 542 cggtggctgccgcgccctacaccc 565
>dbj|AK104552.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-E07, full insert sequence Length = 1167 Score = 119 bits (60), Expect = 8e-24 Identities = 123/144 (85%) Strand = Plus / Plus Query: 323 gtggtgggaaaagggtctgaagcccaacatgagggagatcgagtccgcccaggacctcgt 382 ||||||||| ||| | ||| ||||||||||||||||||||||||| || || ||||||| Sbjct: 375 gtggtgggagaagtgcctgcagcccaacatgagggagatcgagtcggcgcaagacctcgc 434 Query: 383 cgactcgttggctaacgccggcgacaggctcgtcgttgttgacttcttctcccctggctg 442 |||||| | ||||||||||||| ||||||||| || |||||||||||||| ||||| Sbjct: 435 cgactccctcctcaacgccggcgacaagctcgtcgtcgtcgacttcttctccccgggctg 494 Query: 443 cggcggctgccgtgccctccaccc 466 ||| |||||||| ||||| ||||| Sbjct: 495 cggtggctgccgcgccctacaccc 518
>dbj|AK066094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056B07, full insert sequence Length = 1183 Score = 119 bits (60), Expect = 8e-24 Identities = 123/144 (85%) Strand = Plus / Plus Query: 323 gtggtgggaaaagggtctgaagcccaacatgagggagatcgagtccgcccaggacctcgt 382 ||||||||| ||| | ||| ||||||||||||||||||||||||| || || ||||||| Sbjct: 391 gtggtgggagaagtgcctgcagcccaacatgagggagatcgagtcggcgcaagacctcgc 450 Query: 383 cgactcgttggctaacgccggcgacaggctcgtcgttgttgacttcttctcccctggctg 442 |||||| | ||||||||||||| ||||||||| || |||||||||||||| ||||| Sbjct: 451 cgactccctcctcaacgccggcgacaagctcgtcgtcgtcgacttcttctccccgggctg 510 Query: 443 cggcggctgccgtgccctccaccc 466 ||| |||||||| ||||| ||||| Sbjct: 511 cggtggctgccgcgccctacaccc 534
>gb|AY105197.1| Zea mays PCO089198 mRNA sequence Length = 797 Score = 103 bits (52), Expect = 5e-19 Identities = 103/120 (85%) Strand = Plus / Plus Query: 347 caacatgagggagatcgagtccgcccaggacctcgtcgactcgttggctaacgccggcga 406 ||||||| | ||| |||||||||| |||||||| | ||||||| || | ||||||||| Sbjct: 47 caacatgcgcgaggtcgagtccgcgcaggacctggccgactcgctgctcagcgccggcga 106 Query: 407 caggctcgtcgttgttgacttcttctcccctggctgcggcggctgccgtgccctccaccc 466 || |||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 107 caagctcgtggtcgtcgacttcttctccccaggctgcggcggctgccgcgccctccaccc 166
>gb|L18909.1|LILTHIORED Lilium longiflorum potential thioredoxin mRNA, complete cds Length = 1429 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 324 tggtgggaaaagggtctgaagcccaacatgagggagatcgagtccgcccaggacctcgtc 383 |||||||||||||||||| | || ||||||| ||||||| || |||||||| |||||| Sbjct: 250 tggtgggaaaagggtctgcatccgaacatgaaggagatcacctcagcccaggatctcgtc 309 Query: 384 gactc 388 |||| Sbjct: 310 tactc 314
>ref|XM_466591.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1242 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 67 tggcgacggcgcaggcggtggccaagg 93 |||||||||||||||||| |||||||| Sbjct: 919 tggcgacggcgcaggcggaggccaagg 945
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 67 tggcgacggcgcaggcggtggccaagg 93 |||||||||||||||||| |||||||| Sbjct: 23580735 tggcgacggcgcaggcggaggccaagg 23580761 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 170 gtcgccctgcgcgccggcggcggtgcgg 197 ||||||||||||||| ||||||| |||| Sbjct: 19743869 gtcgccctgcgcgcccgcggcggcgcgg 19743842
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 151 gcgccgtggcggcccgcatgtcgccct 177 |||||||||||||| |||||||||||| Sbjct: 1322017 gcgccgtggcggccggcatgtcgccct 1322043
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 67 tggcgacggcgcaggcggtggccaagg 93 |||||||||||||||||| |||||||| Sbjct: 146418 tggcgacggcgcaggcggaggccaagg 146444
>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01 Length = 140019 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 67 tggcgacggcgcaggcggtggccaagg 93 |||||||||||||||||| |||||||| Sbjct: 21835 tggcgacggcgcaggcggaggccaagg 21861
>dbj|AK103400.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128B04, full insert sequence Length = 1242 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 67 tggcgacggcgcaggcggtggccaagg 93 |||||||||||||||||| |||||||| Sbjct: 919 tggcgacggcgcaggcggaggccaagg 945
>gb|BC050912.1| Mus musculus diencephalon/mesencephalon homeobox 1, transcript variant 2, mRNA (cDNA clone MGC:63291 IMAGE:6417663), complete cds Length = 4016 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 gctgcggcggctgccgtgccct 460 |||||||||||||||||||||| Sbjct: 902 gctgcggcggctgccgtgccct 923
>gb|AE009371.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 141 of 187 of the complete sequence Length = 10837 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 182 gccggcggcggtgcggatcggcagga 207 |||| ||||||||||||||||||||| Sbjct: 5586 gccgtcggcggtgcggatcggcagga 5561
>gb|AE008243.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 47 of 187 of the complete sequence Length = 11874 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 182 gccggcggcggtgcggatcggcagga 207 |||| ||||||||||||||||||||| Sbjct: 5253 gccgtcggcggtgcggatcggcagga 5278
>gb|AF499446.1| Mus musculus PRD class homeobox protein (Dmbx1) mRNA, complete cds Length = 5796 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 gctgcggcggctgccgtgccct 460 |||||||||||||||||||||| Sbjct: 2707 gctgcggcggctgccgtgccct 2728
>dbj|AK141654.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030007M14 product:orthodenticle homolog 3 (Drosophila), full insert sequence Length = 4028 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 gctgcggcggctgccgtgccct 460 |||||||||||||||||||||| Sbjct: 941 gctgcggcggctgccgtgccct 962
>gb|AF463513.1|AF463513 Mus musculus cerebellar-diencephalic-mesencephalic homeobox protein (Cdmx) mRNA, complete cds Length = 1146 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 gctgcggcggctgccgtgccct 460 |||||||||||||||||||||| Sbjct: 886 gctgcggcggctgccgtgccct 907
>gb|AF421858.1| Mus musculus paired-like homeobox protein DMBX1 (Dmbx1) mRNA, complete cds; alternatively spliced Length = 1131 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 gctgcggcggctgccgtgccct 460 |||||||||||||||||||||| Sbjct: 871 gctgcggcggctgccgtgccct 892
>gb|AF421857.1| Mus musculus paired-like homeobox protein DMBX1 (Dmbx1) mRNA, complete cds; alternatively spliced Length = 1146 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 gctgcggcggctgccgtgccct 460 |||||||||||||||||||||| Sbjct: 886 gctgcggcggctgccgtgccct 907
>ref|NM_130865.3| Mus musculus diencephalon/mesencephalon homeobox 1 (Dmbx1), transcript variant 1, mRNA Length = 4054 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 gctgcggcggctgccgtgccct 460 |||||||||||||||||||||| Sbjct: 940 gctgcggcggctgccgtgccct 961
>ref|NM_001025567.1| Mus musculus diencephalon/mesencephalon homeobox 1 (Dmbx1), transcript variant 2, mRNA Length = 4039 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 gctgcggcggctgccgtgccct 460 |||||||||||||||||||||| Sbjct: 925 gctgcggcggctgccgtgccct 946
>gb|AF448118.1| Mus musculus Mbx mRNA, complete cds Length = 1557 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 gctgcggcggctgccgtgccct 460 |||||||||||||||||||||| Sbjct: 924 gctgcggcggctgccgtgccct 945
>dbj|AB037698.1| Mus musculus mPaxB mRNA, partial cds Length = 1598 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 439 gctgcggcggctgccgtgccct 460 |||||||||||||||||||||| Sbjct: 906 gctgcggcggctgccgtgccct 927
>emb|AL627105.13| Mouse DNA sequence from clone RP23-383D12 on chromosome 4, complete sequence Length = 190882 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 439 gctgcggcggctgccgtgccct 460 |||||||||||||||||||||| Sbjct: 7149 gctgcggcggctgccgtgccct 7128
>ref|XM_323145.1| Neurospora crassa OR74A hypothetical protein (NCU10027.1) partial mRNA Length = 2757 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 cgtttgcgaaatccaccaagt 324 ||||||||||||||||||||| Sbjct: 2074 cgtttgcgaaatccaccaagt 2054
>ref|XM_952927.1| Neurospora crassa OR74A hypothetical protein (NCU10027.1) partial mRNA Length = 2757 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 cgtttgcgaaatccaccaagt 324 ||||||||||||||||||||| Sbjct: 2074 cgtttgcgaaatccaccaagt 2054
>gb|AF474318.1| Proceraea pseudopicta 18S ribosomal RNA gene, partial sequence Length = 1829 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 gcgccggcggcggtgcggatc 200 ||||||||||||||||||||| Sbjct: 695 gcgccggcggcggtgcggatc 715
>gb|AF474317.1| Proceraea picta 18S ribosomal RNA gene, partial sequence Length = 1831 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 gcgccggcggcggtgcggatc 200 ||||||||||||||||||||| Sbjct: 696 gcgccggcggcggtgcggatc 716
>gb|AF474316.1| Proceraea scapularis 18S ribosomal RNA gene, partial sequence Length = 1831 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 gcgccggcggcggtgcggatc 200 ||||||||||||||||||||| Sbjct: 696 gcgccggcggcggtgcggatc 716
>gb|AC111111.11| Mus musculus chromosome 3, clone RP23-201A9, complete sequence Length = 233326 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 332 aaagggtctgaagcccaacatgagg 356 |||||||||||||||||| |||||| Sbjct: 198758 aaagggtctgaagcccaatatgagg 198782
>gb|AC110040.8| Mus musculus chromosome 3, clone RP23-276J3, complete sequence Length = 202391 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 332 aaagggtctgaagcccaacatgagg 356 |||||||||||||||||| |||||| Sbjct: 175124 aaagggtctgaagcccaatatgagg 175100
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ggcgacggcgcaggcggtggc 88 ||||||||||||||||||||| Sbjct: 850173 ggcgacggcgcaggcggtggc 850193
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541H01 Length = 157519 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ggcgacggcgcaggcggtggc 88 ||||||||||||||||||||| Sbjct: 133307 ggcgacggcgcaggcggtggc 133327
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ggcgacggcgcaggcggtggc 88 ||||||||||||||||||||| Sbjct: 31068 ggcgacggcgcaggcggtggc 31088
>ref|XM_560234.1| Anopheles gambiae str. PEST ENSANGP00000028100 (ENSANGG00000023382), partial mRNA Length = 861 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 181 cgccggcggcggtgcggatcggcag 205 ||||||| ||||||||||||||||| Sbjct: 659 cgccggctgcggtgcggatcggcag 683
>dbj|AK108096.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-A08, full insert sequence Length = 1294 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 ggcgacggcgcaggcggtggc 88 ||||||||||||||||||||| Sbjct: 276 ggcgacggcgcaggcggtggc 296
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cgacggcgcaggcggtggcc 89 |||||||||||||||||||| Sbjct: 1006459 cgacggcgcaggcggtggcc 1006478
>ref|NM_197216.1| Oryza sativa (japonica cultivar-group) putative glutamyl-tRNA reductase (OSJNBb0073N24.1), mRNA Length = 1710 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ggcgcaggcggtggccaagg 93 |||||||||||||||||||| Sbjct: 171 ggcgcaggcggtggccaagg 190
>ref|XM_414964.1| PREDICTED: Gallus gallus similar to CREB-binding protein (LOC416667), mRNA Length = 8061 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 atggcgacggcgcaggcggtggcc 89 |||||||||||||| ||||||||| Sbjct: 6940 atggcgacggcgcaagcggtggcc 6963
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 cggcccgcatgtcgccctgc 179 |||||||||||||||||||| Sbjct: 2398095 cggcccgcatgtcgccctgc 2398114
>gb|AF474321.1| Proceraea hansoni 18S ribosomal RNA gene, partial sequence Length = 1770 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgccggcggcggtgcggatc 200 |||||||||||||||||||| Sbjct: 653 cgccggcggcggtgcggatc 672
>gb|AF474312.1| Proceraea cornuta 18S ribosomal RNA gene, partial sequence Length = 1770 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgccggcggcggtgcggatc 200 |||||||||||||||||||| Sbjct: 654 cgccggcggcggtgcggatc 673
>gb|AF474311.1| Proceraea prismatica 18S ribosomal RNA gene, partial sequence Length = 1769 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgccggcggcggtgcggatc 200 |||||||||||||||||||| Sbjct: 653 cgccggcggcggtgcggatc 672
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 398 cgccggcgacaggctcgtcgttgt 421 ||||||||||||||||| |||||| Sbjct: 211631 cgccggcgacaggctcgccgttgt 211654
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ggcgcaggcggtggccaagg 93 |||||||||||||||||||| Sbjct: 6494 ggcgcaggcggtggccaagg 6475
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 cgccctgcgcgccggcggcg 191 |||||||||||||||||||| Sbjct: 27000 cgccctgcgcgccggcggcg 26981
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 cctggctgcggcggctgccg 454 |||||||||||||||||||| Sbjct: 2975421 cctggctgcggcggctgccg 2975402
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gcgcgccggcggcggtgcgg 197 |||||||||||||||||||| Sbjct: 86047 gcgcgccggcggcggtgcgg 86066
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 gggcgccgtggcggcccgca 168 |||||||||||||||||||| Sbjct: 2032653 gggcgccgtggcggcccgca 2032672
>gb|AF212179.2|AF212179 Proceraea cornuta 18S ribosomal RNA gene, complete sequence Length = 1803 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgccggcggcggtgcggatc 200 |||||||||||||||||||| Sbjct: 655 cgccggcggcggtgcggatc 674
>gb|AC164653.3| Gallus gallus BAC clone CH261-187D17 from chromosome unknown, complete sequence Length = 224272 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tggagcccggcggcggggcg 153 |||||||||||||||||||| Sbjct: 73479 tggagcccggcggcggggcg 73498
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ggcgcaggcggtggccaagg 93 |||||||||||||||||||| Sbjct: 18645216 ggcgcaggcggtggccaagg 18645197
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 cggcggcggggcgccgtggc 160 |||||||||||||||||||| Sbjct: 18893922 cggcggcggggcgccgtggc 18893941
>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G07 Length = 149119 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 170 gtcgccctgcgcgccggcggcggtgcgg 197 ||||||||||||||| ||||||| |||| Sbjct: 52420 gtcgccctgcgcgcccgcggcggcgcgg 52393
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1136H02 Length = 145086 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 170 gtcgccctgcgcgccggcggcggtgcgg 197 ||||||||||||||| ||||||| |||| Sbjct: 100627 gtcgccctgcgcgcccgcggcggcgcgg 100600
>dbj|AK099393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F15, full insert sequence Length = 2128 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ggcgcaggcggtggccaagg 93 |||||||||||||||||||| Sbjct: 402 ggcgcaggcggtggccaagg 421
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gccggcggcggtgcggatcg 201 |||||||||||||||||||| Sbjct: 4709584 gccggcggcggtgcggatcg 4709565
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 cgccctgcgcgccggcggcg 191 |||||||||||||||||||| Sbjct: 1115291 cgccctgcgcgccggcggcg 1115272
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ggcgcaggcggtggccaagg 93 |||||||||||||||||||| Sbjct: 18656069 ggcgcaggcggtggccaagg 18656050
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 cgccctgcgcgccggcggcg 191 |||||||||||||||||||| Sbjct: 3873770 cgccctgcgcgccggcggcg 3873789
>dbj|AB011416.1| Oryza sativa (indica cultivar-group) mRNA for glutamyl-tRNA reductase, complete cds Length = 1703 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ggcgcaggcggtggccaagg 93 |||||||||||||||||||| Sbjct: 242 ggcgcaggcggtggccaagg 261
>emb|AL603867.7| Mouse DNA sequence from clone RP23-237G11 on chromosome 15, complete sequence Length = 112729 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ggaaaagcccgtttcttggc 224 |||||||||||||||||||| Sbjct: 72635 ggaaaagcccgtttcttggc 72616 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,850,434 Number of Sequences: 3902068 Number of extensions: 2850434 Number of successful extensions: 63581 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61930 Number of HSP's gapped (non-prelim): 1647 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
