ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08g10 |
|---|---|
| Clone Library Name | barley_pub |
>RLA0_ORYSA (P41095) 60S acidic ribosomal protein P0| Length = 318 Score = 200 bits (509), Expect = 1e-51 Identities = 101/111 (90%), Positives = 107/111 (96%) Frame = +3 Query: 141 AIKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTL 320 AIKRTKAEKK+AYD+KLCQLL+EYTKVLIAVADNVGS QLQEIRKGLRGDSIVLMGKNTL Sbjct: 1 AIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTL 60 Query: 321 IRRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 IRRCIKVH++ TGNK+FLEL LLVGNVGLIFTKGDLKEVREEVAKYKVGA Sbjct: 61 IRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGA 111
>RLA0_MAIZE (O24573) 60S acidic ribosomal protein P0| Length = 318 Score = 190 bits (482), Expect = 2e-48 Identities = 96/111 (86%), Positives = 105/111 (94%) Frame = +3 Query: 141 AIKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTL 320 AIKRTKAEKKIAYD+KLC LL+EYTKVLIA+ADNVGSKQLQ+IR+GLRGDS+VLMGKNTL Sbjct: 1 AIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNTL 60 Query: 321 IRRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 IRRCIKV++EKTGN F L +LLVGNVGLIFTKGDLKEVREEVAKYKVGA Sbjct: 61 IRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGA 111
>RLA0A_ARATH (O04204) 60S acidic ribosomal protein P0-A| Length = 317 Score = 171 bits (432), Expect = 1e-42 Identities = 82/112 (73%), Positives = 97/112 (86%) Frame = +3 Query: 138 MAIKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNT 317 MA+K TKAEKKI YD KLCQLL EY+++L+ ADNVGS QLQ IRKGLRGDS+VLMGKNT Sbjct: 1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60 Query: 318 LIRRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 +++R +++H++KTGN+ FL L LL GNVGLIFTKGDLKEV EEVAKYKVGA Sbjct: 61 MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGA 112
>RLA0_LUPLU (P50345) 60S acidic ribosomal protein P0| Length = 322 Score = 169 bits (428), Expect = 3e-42 Identities = 83/112 (74%), Positives = 98/112 (87%) Frame = +3 Query: 138 MAIKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNT 317 MA K TKAEKKI YD KLCQLL+EYT++L+ ADNVGSKQLQ IR+GLRGDS+VLMGKNT Sbjct: 1 MAPKATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNT 60 Query: 318 LIRRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 +++R +++H+EKTGN+ FL L LL+GNVGLIFTKG LKEV EEVAKYKVGA Sbjct: 61 MMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGA 112
>RLA0_SOYBN (P50346) 60S acidic ribosomal protein P0| Length = 320 Score = 167 bits (424), Expect = 1e-41 Identities = 82/112 (73%), Positives = 97/112 (86%) Frame = +3 Query: 138 MAIKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNT 317 MA K+TKAEKKIAYD KLC L+EEY ++L+ +DNVGS QLQ IRKGLRGDS+VLMGKNT Sbjct: 1 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 60 Query: 318 LIRRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 +++R +++H+EKTGN +L L LLVGNVGLIFTKGDLKEV EEVAKYKVGA Sbjct: 61 MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGA 112
>RLA0B_ARATH (Q42112) 60S acidic ribosomal protein P0-B| Length = 320 Score = 167 bits (423), Expect = 1e-41 Identities = 81/110 (73%), Positives = 94/110 (85%) Frame = +3 Query: 144 IKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLI 323 +K TKAEKKIAYD KLCQL++EYT++L+ ADNVGS QLQ IRKGLRGDS+VLMGKNT++ Sbjct: 2 VKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM 61 Query: 324 RRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 +R +++HSE TGN L L LL GNVGLIFTKGDLKEV EEVAKYKVGA Sbjct: 62 KRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGA 111
>RLA0C_ARATH (P57691) 60S acidic ribosomal protein P0-C| Length = 323 Score = 166 bits (419), Expect = 4e-41 Identities = 80/110 (72%), Positives = 94/110 (85%) Frame = +3 Query: 144 IKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLI 323 +K TKAEKKIAYD KLCQL++EYT++L+ ADNVGS QLQ IRKGLRGDS+VLMGKNT++ Sbjct: 2 VKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM 61 Query: 324 RRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 +R +++HSE +GN L L LL GNVGLIFTKGDLKEV EEVAKYKVGA Sbjct: 62 KRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGA 111
>RLA0_CHERU (P29764) 60S acidic ribosomal protein P0 (Light-induced 34 kDa| protein) Length = 321 Score = 163 bits (413), Expect = 2e-40 Identities = 80/112 (71%), Positives = 97/112 (86%) Frame = +3 Query: 138 MAIKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNT 317 MA+K TKAEKKIAYDQKLCQLL+EY++VLIA ADNVGS QLQ IR GLRGDSIVLMGKNT Sbjct: 1 MAVKPTKAEKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNT 60 Query: 318 LIRRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 +++R I++H+E TGN++ + L + NVGLIFTKGDL +VREE++KYKVGA Sbjct: 61 MMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGA 112
>RLA0_CERCA (Q9U3U0) 60S acidic ribosomal protein P0 (CcP0)| Length = 317 Score = 97.8 bits (242), Expect = 1e-20 Identities = 53/110 (48%), Positives = 71/110 (64%) Frame = +3 Query: 144 IKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLI 323 ++ KA K Y K+ +L +EY K I ADNVGSKQ+Q IR LRG +VLMGKNT++ Sbjct: 2 VRENKAAWKAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMM 61 Query: 324 RRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 R+ I+ H E N +L + GNVG +FTKGDL EVR+++ + KV A Sbjct: 62 RKAIRGHLE--NNAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRA 109
>RLA0_DROME (P19889) 60S acidic ribosomal protein P0 (DNA-(apurinic or| apyrimidinic site) lyase) (EC 4.2.99.18) (Apurinic-apyrimidinic endonuclease) Length = 317 Score = 96.3 bits (238), Expect = 4e-20 Identities = 52/110 (47%), Positives = 72/110 (65%) Frame = +3 Query: 144 IKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLI 323 ++ KA K Y K+ +L +E+ K I ADNVGSKQ+Q IR LRG ++VLMGKNT++ Sbjct: 2 VRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMM 61 Query: 324 RRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 R+ I+ H E N +L + GNVG +FTKGDL EVR+++ + KV A Sbjct: 62 RKAIRGHLE--NNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRA 109
>RLA0_NEUCR (Q96TJ5) 60S acidic ribosomal protein P0| Length = 313 Score = 95.9 bits (237), Expect = 5e-20 Identities = 49/106 (46%), Positives = 68/106 (64%) Frame = +3 Query: 156 KAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCI 335 K+ K Y KL LLE+Y + I DNV S+Q+ EIR+ LRG+++VLMGKNT++RR + Sbjct: 4 KSANKAGYFDKLKGLLEDYRSIFIVSVDNVSSQQMHEIRQSLRGEAVVLMGKNTMVRRAL 63 Query: 336 KVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 K T ++ L + GNVG +FT GDLKEVR+++ KV A Sbjct: 64 KTFVADT--PEYERLLPFVKGNVGFVFTNGDLKEVRDKILANKVAA 107
>RLA0_RANSY (Q9DG68) 60S acidic ribosomal protein P0 (L10E)| Length = 315 Score = 93.2 bits (230), Expect = 3e-19 Identities = 52/109 (47%), Positives = 70/109 (64%) Frame = +3 Query: 147 KRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 + +A K Y K+ QLL++Y K I ADNVGSKQ+Q+IR LRG ++VLMGKNT++R Sbjct: 3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62 Query: 327 RCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 + I+ H E N +L + GNVG +FTK DL EVR+ + KV A Sbjct: 63 KAIRGHLE--NNSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPA 109
>RLA0_CHICK (P47826) 60S acidic ribosomal protein P0 (L10E)| Length = 316 Score = 92.4 bits (228), Expect = 5e-19 Identities = 50/109 (45%), Positives = 70/109 (64%) Frame = +3 Query: 147 KRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 + +A K Y K+ QLL++Y K + ADNVGSKQ+Q+IR LRG ++VLMGKNT++R Sbjct: 3 REDRATWKSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62 Query: 327 RCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 + I+ H E N +L + GNVG +FTK DL E+R+ + KV A Sbjct: 63 KAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPA 109
>RLA0_RAT (P19945) 60S acidic ribosomal protein P0 (L10E)| Length = 317 Score = 92.0 bits (227), Expect = 7e-19 Identities = 51/109 (46%), Positives = 70/109 (64%) Frame = +3 Query: 147 KRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 + +A K Y K+ QLL++Y K I ADNVGSKQ+Q+IR LRG ++VLMGKNT++R Sbjct: 3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62 Query: 327 RCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 + I+ H E N +L + GNVG +FTK DL E+R+ + KV A Sbjct: 63 KAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPA 109
>RLA0_MOUSE (P14869) 60S acidic ribosomal protein P0 (L10E)| Length = 317 Score = 92.0 bits (227), Expect = 7e-19 Identities = 51/109 (46%), Positives = 70/109 (64%) Frame = +3 Query: 147 KRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 + +A K Y K+ QLL++Y K I ADNVGSKQ+Q+IR LRG ++VLMGKNT++R Sbjct: 3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62 Query: 327 RCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 + I+ H E N +L + GNVG +FTK DL E+R+ + KV A Sbjct: 63 KAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPA 109
>RLA0_HUMAN (P05388) 60S acidic ribosomal protein P0 (L10E)| Length = 317 Score = 92.0 bits (227), Expect = 7e-19 Identities = 51/109 (46%), Positives = 70/109 (64%) Frame = +3 Query: 147 KRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 + +A K Y K+ QLL++Y K I ADNVGSKQ+Q+IR LRG ++VLMGKNT++R Sbjct: 3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMR 62 Query: 327 RCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 + I+ H E N +L + GNVG +FTK DL E+R+ + KV A Sbjct: 63 KAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPA 109
>RLA0_PODAN (Q9C3Z6) 60S acidic ribosomal protein P0| Length = 314 Score = 91.7 bits (226), Expect = 9e-19 Identities = 47/106 (44%), Positives = 65/106 (61%) Frame = +3 Query: 156 KAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCI 335 K+ K Y KL LLEEY + I DNV S+Q+ EIR+ LR +VLMGKNT++RR + Sbjct: 4 KSANKAGYFDKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRAL 63 Query: 336 KVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 K + ++ L + GNVG +FT GDLKE+R+++ KV A Sbjct: 64 KTF--LVDSPEYERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAA 107
>RLA0_CAEEL (Q93572) 60S acidic ribosomal protein P0| Length = 311 Score = 91.3 bits (225), Expect = 1e-18 Identities = 48/110 (43%), Positives = 71/110 (64%) Frame = +3 Query: 144 IKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLI 323 ++ ++ K Y KL +L EEY K L+ DNVGSKQ+QEIR+ +RG + +LMGKNT+I Sbjct: 1 VREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMI 60 Query: 324 RRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 R+ ++ H K N +L +V NVG +FTK DL E+R ++ + + GA Sbjct: 61 RKALRGHLGK--NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGA 108
>RLA0_BOVIN (Q95140) 60S acidic ribosomal protein P0 (L10E) (Fragment)| Length = 309 Score = 90.9 bits (224), Expect = 2e-18 Identities = 50/102 (49%), Positives = 67/102 (65%) Frame = +3 Query: 168 KIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHS 347 K Y K+ QLL++Y K I ADNVGSKQ+Q+IR LRG ++VLMGKNT++R+ I+ H Sbjct: 1 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 60 Query: 348 EKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 E N +L + GNVG +FTK DL E+R+ + KV A Sbjct: 61 E--NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPA 100
>RLA0_ICTPU (Q90YX1) 60S acidic ribosomal protein P0 (L10E)| Length = 317 Score = 90.5 bits (223), Expect = 2e-18 Identities = 53/109 (48%), Positives = 68/109 (62%) Frame = +3 Query: 147 KRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 + +A K Y K+ QLL +Y K I ADNVGSKQ+Q IR LRG +IVLMGKNT++R Sbjct: 3 REDRATWKSNYFLKIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMR 62 Query: 327 RCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 + I+ H E N +L + GNVG +FTK DL EVR+ + KV A Sbjct: 63 KAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPA 109
>RLA0_BRARE (Q9PV90) 60S acidic ribosomal protein P0 (L10E)| Length = 319 Score = 88.6 bits (218), Expect = 8e-18 Identities = 51/109 (46%), Positives = 68/109 (62%) Frame = +3 Query: 147 KRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 + +A K Y K+ QLL+++ K I ADNVGSKQ+Q IR LRG ++VLMGKNT++R Sbjct: 3 REDRATWKSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMR 62 Query: 327 RCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 + I+ H E N L + GNVG +FTK DL EVR+ + KV A Sbjct: 63 KAIRGHLE--NNPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPA 109
>RLA0_PLAF8 (Q94660) 60S acidic ribosomal protein P0| Length = 316 Score = 80.9 bits (198), Expect = 2e-15 Identities = 43/106 (40%), Positives = 65/106 (61%) Frame = +3 Query: 147 KRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 K +K +KK Y +KL L+++Y+K+LI DNVGS Q+ +RK LRG + +LMGKNT IR Sbjct: 3 KLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIR 62 Query: 327 RCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYK 464 +K + + + +L L+ N+G +F K DL E+R + K Sbjct: 63 TALKKNLQAVPQIE--KLLPLVKLNMGFVFCKDDLSEIRNIILDNK 106
>RLA0_YEAST (P05317) 60S acidic ribosomal protein P0 (L10E)| Length = 312 Score = 79.7 bits (195), Expect = 3e-15 Identities = 43/104 (41%), Positives = 62/104 (59%) Frame = +3 Query: 162 EKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKV 341 EKK Y KL + LEEY + + DNV S+Q+ E+RK LRG ++VLMGKNT++RR I+ Sbjct: 6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIR- 64 Query: 342 HSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 + DF +L + G VG +FT L E++ + +V A Sbjct: 65 -GFLSDLPDFEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAA 107
>RLA0_PIG (Q29214) 60S acidic ribosomal protein P0 (L10E) (Fragment)| Length = 93 Score = 79.0 bits (193), Expect = 6e-15 Identities = 43/92 (46%), Positives = 59/92 (64%) Frame = +3 Query: 147 KRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 + +A K Y K+ QLL++Y K I ADNVGSKQ+Q+IR LRG ++VLMGKNT++R Sbjct: 3 REDRAPWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMXLRGKAVVLMGKNTMMR 62 Query: 327 RCIKVHSEKTGNKDFLELSNLLVGNVGLIFTK 422 + I+ H E N +L + GNVG +F K Sbjct: 63 KAIRGHLE--NNPALGKLLPQIRGNVGFVFXK 92
>RLA0_SCHPO (O74864) 60S acidic ribosomal protein P0| Length = 312 Score = 77.8 bits (190), Expect = 1e-14 Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Frame = +3 Query: 138 MAIKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNT 317 MAI + E K Y +KL L E+Y + + DNV S+Q+ +RK LRG + ++MGKNT Sbjct: 1 MAISK---ESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNT 57 Query: 318 LIRRCIKVHSEKTGNKDFLELSNLLV---GNVGLIFTKGDLKEVREEVAKYKVGA 473 +IRR ++ D EL LL GNVG +FT DLKEVRE + + A Sbjct: 58 MIRRAMRGII-----NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAA 107
>RLA0_EIMTE (Q967Y7) 60S acidic ribosomal protein P0| Length = 314 Score = 70.9 bits (172), Expect = 2e-12 Identities = 45/105 (42%), Positives = 61/105 (58%) Frame = +3 Query: 159 AEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIK 338 A K+ Y +L QL+ E+ +VL+ AD+VGSKQL IR LRG + VLMGKNT IR ++ Sbjct: 6 AAKRREYFPRLLQLVLEHPRVLVVSADHVGSKQLAGIRVALRGQATVLMGKNTKIRTALR 65 Query: 339 VHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 ++ L L+ NVG IF + D VR V ++KV A Sbjct: 66 QQLQQ--QPQLQALLPLVRLNVGFIFCRADPAAVRAVVQQHKVPA 108
>RLA0_DICDI (P22685) 60S acidic ribosomal protein P0| Length = 305 Score = 70.1 bits (170), Expect = 3e-12 Identities = 40/105 (38%), Positives = 63/105 (60%) Frame = +3 Query: 159 AEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIK 338 +++K + +K +L Y K+++A AD VGS QLQ+IRK +RG VLMGK T+IR+ I+ Sbjct: 6 SKRKKLFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIR 65 Query: 339 VHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 ++ D L+ L N +IF K ++ EV+ + +VGA Sbjct: 66 DLADSKPELD--ALNTYLKQNTCIIFCKDNIAEVKRVINTQRVGA 108
>RLA0_LEICH (P39096) 60S acidic ribosomal protein P0| Length = 322 Score = 61.6 bits (148), Expect = 1e-09 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%) Frame = +3 Query: 168 KIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHS 347 K Y+++L L +Y+ VL DNV S+Q+ ++R+G RG + +MGK TL + ++ + Sbjct: 8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRGCRGKAEFIMGKKTLQAKIVEKRA 67 Query: 348 -------EKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 E D E NLL GN GLIFT ++E+ + ++V A Sbjct: 68 QAKDASPEAKPFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDGHRVKA 116
>RLA0_TRYCR (P26796) 60S acidic ribosomal protein P0| Length = 323 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 7/112 (6%) Frame = +3 Query: 159 AEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIK 338 +E K Y+++ L +Y +VL + DNV S+Q+ ++R+ LRG ++MGK TL ++ ++ Sbjct: 5 SEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVE 64 Query: 339 VHSEKTGNKDFLEL-------SNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 +E + +L LL GN LIFT ++ + + K++V A Sbjct: 65 RRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQA 116
>RLA0_LEIIN (P39097) 60S acidic ribosomal protein P0| Length = 323 Score = 55.5 bits (132), Expect = 7e-08 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 7/107 (6%) Frame = +3 Query: 168 KIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHS 347 K Y+++L L +Y+ VL DNV S+Q+ ++ + LR + +MGK TL + ++ + Sbjct: 8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVGRALRAKAEFMMGKKTLQGKIVEKRA 67 Query: 348 -------EKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKV 467 E D E NLL GN GLIFT ++E+ + ++V Sbjct: 68 QAKDASPEAKHFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDAHRV 114
>RLA0_METTL (O52705) Acidic ribosomal protein P0 homolog (L10E)| Length = 338 Score = 53.5 bits (127), Expect = 3e-07 Identities = 32/84 (38%), Positives = 48/84 (57%) Frame = +3 Query: 168 KIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHS 347 KI KL +LL+ V + V ++QLQEIR +RG + M +NTLI R IK + Sbjct: 14 KIEEVNKLKELLKNGQIVALVDMMEVPARQLQEIRDKIRGTMTLKMSRNTLIERAIKEVA 73 Query: 348 EKTGNKDFLELSNLLVGNVGLIFT 419 E+TGN +F +L++ + +I T Sbjct: 74 EETGNPEFAKLADYIDKGAAIITT 97
>MRT4_YEAST (P33201) mRNA turnover protein 4| Length = 236 Score = 48.5 bits (114), Expect = 9e-06 Identities = 30/105 (28%), Positives = 55/105 (52%) Frame = +3 Query: 147 KRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 K+ + K+ +D+ + + L+ Y V + D+V + LQEIR G ++ MGK +++ Sbjct: 17 KKGRENKERIFDE-VREALDTYRYVWVLHLDDVRTPVLQEIRTSWAGSKLI-MGKRKVLQ 74 Query: 327 RCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKY 461 + + E+ ++ +LS L G GL+FT D+ V+E Y Sbjct: 75 KALGEKREEEYKENLYQLSKLCSGVTGLLFTDEDVNTVKEYFKSY 119
>RLA0_METVA (P15826) Acidic ribosomal protein P0 homolog (L10E) (ML2)| Length = 336 Score = 46.6 bits (109), Expect = 3e-05 Identities = 27/85 (31%), Positives = 46/85 (54%) Frame = +3 Query: 168 KIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHS 347 KI L +LL+ + + V + QLQEIR +R + M +NTLI+R ++ + Sbjct: 14 KIEEVNALKELLKSANVIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLIKRAVEEVA 73 Query: 348 EKTGNKDFLELSNLLVGNVGLIFTK 422 E+TGN +F +L + L ++ T+ Sbjct: 74 EETGNPEFAKLVDYLDKGAAIVVTE 98
>RLA0_HALSA (P13553) Acidic ribosomal protein P0 homolog (L10E)| Length = 352 Score = 46.2 bits (108), Expect = 4e-05 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Frame = +3 Query: 186 KLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGNK 365 +L LLE Y V + + SKQLQ++R+GL G + + M +NTL+ R + E+ G Sbjct: 22 ELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAG-- 75 Query: 366 DFLE-LSNLLVGNVGLIFT 419 D L+ L+ + G VGL+ T Sbjct: 76 DGLDTLTEYVEGEVGLVAT 94
>RLA0_METVO (Q9Y8J3) Acidic ribosomal protein P0 homolog (L10E) (Fragment)| Length = 297 Score = 46.2 bits (108), Expect = 4e-05 Identities = 29/88 (32%), Positives = 46/88 (52%) Frame = +3 Query: 159 AEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIK 338 A K+ L +LL+ + + V S QLQEIR +R + M +NTL++R I+ Sbjct: 11 ASWKVDEVNSLKELLKSGNVIALIDMMEVPSVQLQEIRDTIRDSMTLKMSRNTLMKRAIE 70 Query: 339 VHSEKTGNKDFLELSNLLVGNVGLIFTK 422 +E+TGN F +L + + LI T+ Sbjct: 71 EVAEETGNPSFTKLIDCMEKGAALIATE 98
>MRT4_CANGA (Q6FJ04) mRNA turnover protein 4 homolog| Length = 239 Score = 45.4 bits (106), Expect = 7e-05 Identities = 29/105 (27%), Positives = 54/105 (51%) Frame = +3 Query: 147 KRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 K+ + K+ +D+ + + L+ Y V + D+V + LQEIR+ G + LMGK ++ Sbjct: 17 KKGRENKERIFDE-VREALDTYKYVFVLQLDDVRTPVLQEIREAWVGSKL-LMGKRKVLE 74 Query: 327 RCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKY 461 + + E+ ++ +L+ G +GL+FT L V+E Y Sbjct: 75 KALGTTREQEYKENLSKLTKYCSGVIGLLFTNETLDTVKEYFEAY 119
>RLA0_METKA (Q8TX50) Acidic ribosomal protein P0 homolog (L10E)| Length = 357 Score = 44.7 bits (104), Expect = 1e-04 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 2/100 (2%) Frame = +3 Query: 135 PMAIKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLR-GDSIVLMGK 311 P + AE K ++L +L++EY V + + + + QLQEIR LR D+I+ M + Sbjct: 10 PSGYEPKVAEWKRREVKELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTIIRMSR 69 Query: 312 NTLIRRCIKVHSEKTGNKDFLE-LSNLLVGNVGLIFTKGD 428 NTL+R ++ EK + LE L + + G V IFT D Sbjct: 70 NTLMRIALE---EKLDERPELEPLLDYIEGPVAFIFTNLD 106
>MRT4_NEUCR (Q7S302) mRNA turnover protein 4 homolog| Length = 252 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/101 (26%), Positives = 47/101 (46%) Frame = +3 Query: 144 IKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLI 323 + + E+K + + + + Y + DN+ + L+++RK L D + GK L Sbjct: 15 VTKKNREQKEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKELN-DCRIFFGKTKLT 73 Query: 324 RRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVRE 446 R + E +LS L G+VGLIFT D E+++ Sbjct: 74 ARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKD 114
>RLA0_HALVO (P41198) Acidic ribosomal protein P0 homolog (L10E)| Length = 350 Score = 44.3 bits (103), Expect = 2e-04 Identities = 29/96 (30%), Positives = 45/96 (46%) Frame = +3 Query: 186 KLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGNK 365 +L +E Y V + + S+QLQ +R+ L G + V M +NTL+ R + N Sbjct: 22 ELVDFIESYESVGVVGVAGIPSRQLQSMRRELHGSAAVRMSRNTLVNRAL-----DEVND 76 Query: 366 DFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 F EL + G V LI T + + +E+ K A Sbjct: 77 GFEELKEYIAGQVALIGTNDNPFALFKELEASKTPA 112
>RLA0_METTH (O27717) Acidic ribosomal protein P0 homolog (L10E)| Length = 336 Score = 43.9 bits (102), Expect = 2e-04 Identities = 30/87 (34%), Positives = 48/87 (55%) Frame = +3 Query: 159 AEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIK 338 AE K Q+L L++ Y V IA ++ ++QLQ++R+ LR +++ M K TLI ++ Sbjct: 5 AEWKKKEVQELHDLIKGYEVVGIANLADIPARQLQKMRQTLRDSALIRMSKKTLISLALE 64 Query: 339 VHSEKTGNKDFLELSNLLVGNVGLIFT 419 + N D LS+ + G LIFT Sbjct: 65 KAGRELENVD--SLSDYMEGQPALIFT 89
>RLA0_SULTO (Q971J2) Acidic ribosomal protein P0 homolog (L10E)| Length = 337 Score = 43.5 bits (101), Expect = 3e-04 Identities = 33/114 (28%), Positives = 58/114 (50%) Frame = +3 Query: 126 VAAPMAIKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLM 305 + A + +R A+ KI ++L Q L EY ++IA + + +L +IRK +RG + + + Sbjct: 3 IMAVITQERKIAKWKIEEVKELEQKLREYHTIIIANIEGFPADKLHDIRKKMRGMAEIKV 62 Query: 306 GKNTLIRRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKV 467 KNTL + K D +L L G IFT + E++ ++K+K+ Sbjct: 63 TKNTLFG-----IAAKNAGLDVSKLEPYLTGPNAFIFTNKNPFEIQLFLSKFKL 111
>RLA0_SULSO (P96039) Acidic ribosomal protein P0 homolog (L10E) (Ribosomal| protein L10) Length = 338 Score = 41.2 bits (95), Expect = 0.001 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Frame = +3 Query: 138 MAIKRTK-AEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKN 314 +A+K+ K A K+ ++L +L++ +LI + + +L EIRK LRG + + + KN Sbjct: 6 LALKQRKVASWKLEEVKELTELIKNSNTILIGNLEGFPADKLHEIRKKLRGKATIKVTKN 65 Query: 315 TLIRRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTK 422 TL + + K D +L L G IFTK Sbjct: 66 TLFK-----IAAKNAGIDIEKLEQYLTGPNVFIFTK 96
>RLA0_METJA (P54049) Acidic ribosomal protein P0 homolog (L10E)| Length = 338 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Frame = +3 Query: 213 TKVLIAVAD--NVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGNKDFLELSN 386 +K ++A+ D +V + QLQEIR +R + M +NTLI R +K +E+ N EL+N Sbjct: 26 SKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELAN 85 Query: 387 LLVGNVGLIFT 419 + ++ T Sbjct: 86 YVERGAAILVT 96
>RLA0_HALMA (P15825) 50S ribosomal protein L10E (Ribosomal protein L10) (Acidic| ribosomal protein P0 homolog) (L10E) (HMal10) Length = 348 Score = 39.3 bits (90), Expect = 0.005 Identities = 26/95 (27%), Positives = 49/95 (51%) Frame = +3 Query: 189 LCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGNKD 368 + +++E Y V + + S+QLQ++R+ L G + + + +NTL+ R + G +D Sbjct: 23 IVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL--DDVDDGLED 80 Query: 369 FLELSNLLVGNVGLIFTKGDLKEVREEVAKYKVGA 473 L+ + G VGLI T + + +E+ K A Sbjct: 81 ---LNGYITGQVGLIGTDDNPFSLFQELEASKTPA 112
>RL10_SYNSC (Q3AGT1) 50S ribosomal protein L10| Length = 175 Score = 39.3 bits (90), Expect = 0.005 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Frame = +3 Query: 186 KLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRG-DSIVLMGKNTLIRRCIKVHSEKTGN 362 +L +LL + L+ + K++ ++R LR DS+ + KNTL+RR I G+ Sbjct: 14 ELKELLADAELALVLDFKGLSIKEMSDLRDRLRASDSVCKVTKNTLMRRAI------DGD 67 Query: 363 KDFLELSNLLVGNVGLIFTKGDL 431 ++ L +LL G + KGD+ Sbjct: 68 SNWASLDSLLTGTNAFVLVKGDV 90
>RLA0_PYRKO (Q5JH36) Acidic ribosomal protein P0 homolog (L10E)| Length = 340 Score = 38.1 bits (87), Expect = 0.012 Identities = 21/88 (23%), Positives = 46/88 (52%) Frame = +3 Query: 159 AEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIK 338 AE K ++L +++ Y + + V + L ++R LRG +++ + +NTLI IK Sbjct: 5 AEWKKKEVEELANIIKSYPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIK 64 Query: 339 VHSEKTGNKDFLELSNLLVGNVGLIFTK 422 +++ G + +L + + G ++ T+ Sbjct: 65 RAAQELGQPELEKLIDHIQGGAAILATE 92
>RL10_TROWT (Q83FL0) 50S ribosomal protein L10| Length = 166 Score = 37.7 bits (86), Expect = 0.015 Identities = 25/91 (27%), Positives = 45/91 (49%) Frame = +3 Query: 189 LCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGNKD 368 L +L + ++ + + QL+ +R LRGD+ L+ KNTL R + +++ G D Sbjct: 10 LVGVLSDAQAIVFTEYRGLSAAQLRALRILLRGDASYLIAKNTLAR----IAAQQVGFND 65 Query: 369 FLELSNLLVGNVGLIFTKGDLKEVREEVAKY 461 F E L G ++ GD+ V + + K+ Sbjct: 66 FAE---FLRGPTAIVAVDGDIVSVAKSLRKF 93
>RL10_TROW8 (Q83HB1) 50S ribosomal protein L10| Length = 166 Score = 37.7 bits (86), Expect = 0.015 Identities = 25/91 (27%), Positives = 45/91 (49%) Frame = +3 Query: 189 LCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGNKD 368 L +L + ++ + + QL+ +R LRGD+ L+ KNTL R + +++ G D Sbjct: 10 LVGVLSDAQAIVFTEYRGLSAAQLRALRILLRGDASYLIAKNTLAR----IAAQQVGFND 65 Query: 369 FLELSNLLVGNVGLIFTKGDLKEVREEVAKY 461 F E L G ++ GD+ V + + K+ Sbjct: 66 FAE---FLRGPTAIVAVDGDIVSVAKSLRKF 93
>RLA0_SULAC (P35023) Acidic ribosomal protein P0 homolog (L10E) (Ribosomal| protein L10) Length = 335 Score = 37.7 bits (86), Expect = 0.015 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%) Frame = +3 Query: 138 MAIKRTKAEKKIAYDQ--KLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGK 311 +A+ TK K D+ +L + L+ + ++IA + + +L EIRK LRG + + + K Sbjct: 4 LAVTTTKKIAKWKVDEVAELTEKLKTHKTIIIANIEGFPADKLHEIRKKLRGKADIKVTK 63 Query: 312 NTLIRRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKYKV 467 N L + K D + L G IFT + E++ ++K+K+ Sbjct: 64 NNLFNIAL-----KNAGYDTKLFESYLTGPNAFIFTDTNPFELQLFLSKFKL 110
>RLA0_ARCFU (O28781) Acidic ribosomal protein P0 homolog (L10E)| Length = 339 Score = 37.4 bits (85), Expect = 0.020 Identities = 24/91 (26%), Positives = 49/91 (53%) Frame = +3 Query: 141 AIKRTKAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTL 320 A++ + E K+ +++ +++ V I NV + Q+Q+IR+ RG + + + KNTL Sbjct: 3 AVRGSPPEYKVRAVEEIKRMISSKPVVAIVSFRNVPAGQMQKIRREFRGKAEIKVVKNTL 62 Query: 321 IRRCIKVHSEKTGNKDFLELSNLLVGNVGLI 413 + R + + G D+L+L + L + +I Sbjct: 63 LERAL----DALGG-DYLKLKDYLGDQIAII 88
>MRT4_SCHPO (Q9USZ6) mRNA turnover protein 4 homolog| Length = 241 Score = 35.8 bits (81), Expect = 0.058 Identities = 27/93 (29%), Positives = 46/93 (49%) Frame = +3 Query: 162 EKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKV 341 E K A + Q L+ + + I N+ + L+ IR +G S + MGK ++ + + Sbjct: 21 EGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTKVMAKALGH 79 Query: 342 HSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEV 440 E+ ++ +L+ LL G VGL+FT EV Sbjct: 80 TPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEV 112
>MRT4_MOUSE (Q9D0I8) mRNA turnover protein 4 homolog| Length = 239 Score = 35.0 bits (79), Expect = 0.099 Identities = 24/93 (25%), Positives = 45/93 (48%) Frame = +3 Query: 183 QKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGN 362 ++L + ++ Y + I N+ + +L++IR + S + GKN ++ + Sbjct: 28 EELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWK-HSRMFFGKNKVMMVALGRSPSDEYK 86 Query: 363 KDFLELSNLLVGNVGLIFTKGDLKEVREEVAKY 461 + ++S L G VGL+FT +EV E KY Sbjct: 87 DNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKY 119
>MRT4_HUMAN (Q9UKD2) mRNA turnover protein 4 homolog| Length = 239 Score = 35.0 bits (79), Expect = 0.099 Identities = 24/93 (25%), Positives = 45/93 (48%) Frame = +3 Query: 183 QKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGN 362 ++L + ++ Y + I N+ + +L++IR + S + GKN ++ + Sbjct: 28 EELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWK-HSRMFFGKNKVMMVALGRSPSDEYK 86 Query: 363 KDFLELSNLLVGNVGLIFTKGDLKEVREEVAKY 461 + ++S L G VGL+FT +EV E KY Sbjct: 87 DNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKY 119
>RL10_PROMM (Q7V477) 50S ribosomal protein L10| Length = 175 Score = 33.5 bits (75), Expect = 0.29 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Frame = +3 Query: 162 EKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDS-IVLMGKNTLIRRCIK 338 E K ++L LL E L+ + K++ ++R L+ + + + KNTL+R I Sbjct: 6 ESKQQIVEELKGLLGEAEMALVLDYQGLSIKEMSDLRTRLQASNGVCKVTKNTLMRHAIN 65 Query: 339 VHSEKTGNKDFLELSNLLVGNVGLIFTKGDL 431 GN + L +LL G + KGD+ Sbjct: 66 ------GNGAWSNLESLLTGTNAFVLIKGDV 90
>RL10_SYNJB (Q2JM49) 50S ribosomal protein L10| Length = 187 Score = 33.1 bits (74), Expect = 0.37 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Frame = +3 Query: 165 KKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLR-GDSIVLMGKNTLIRRCIKV 341 KK K+ LL+ VL+ + ++ ++R LR DS+ ++ KNTL+RR I Sbjct: 8 KKAEIVDKVRSLLQASQMVLVIDYKGLTVAEMDQLRAELRKSDSVCMVVKNTLMRRAI-- 65 Query: 342 HSEKTGNKDFLELSNLLVGNVGLIFTKGDL 431 K + + L G I +GD+ Sbjct: 66 ----ADQKAWAGIIPFLAGPTAFILIRGDI 91
>RL10_THEFY (Q47LI3) 50S ribosomal protein L10| Length = 175 Score = 32.3 bits (72), Expect = 0.64 Identities = 28/93 (30%), Positives = 45/93 (48%) Frame = +3 Query: 159 AEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIK 338 AE K + +L EY + +A QL E+R+ L ++ + KNTL K Sbjct: 11 AELKEEFQTSSGAVLTEYRGLTVA--------QLTELRRSLGQNARFRVAKNTL----TK 58 Query: 339 VHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKE 437 + +++ G D E+ +LL G + F KGD+ E Sbjct: 59 IAAKEAGVTD-SEVLDLLKGPSAIAFVKGDVVE 90
>RL10_CORGL (Q8NT29) 50S ribosomal protein L10| Length = 171 Score = 31.2 bits (69), Expect = 1.4 Identities = 27/101 (26%), Positives = 46/101 (45%) Frame = +3 Query: 159 AEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIK 338 AE K + + +L EY + +A Q E+RK L D + KNTL +K Sbjct: 11 AELKARFAETDTVVLTEYRGLTVA--------QTTELRKALGFDVQYSVAKNTL----VK 58 Query: 339 VHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKY 461 + + + G + L +LL G + F KG+ + + + K+ Sbjct: 59 IAANEAGVEG---LDDLLTGPTAVAFIKGEAVDTAKVLKKF 96
>RL10_COREF (Q8FSA1) 50S ribosomal protein L10| Length = 171 Score = 31.2 bits (69), Expect = 1.4 Identities = 26/101 (25%), Positives = 47/101 (46%) Frame = +3 Query: 159 AEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIK 338 AE K + + +L EY + +A Q E+R+ L D + KNTL +K Sbjct: 11 AELKAQFAETDSIVLTEYRGLTVA--------QTTELRRALGDDVQYSVAKNTL----VK 58 Query: 339 VHSEKTGNKDFLELSNLLVGNVGLIFTKGDLKEVREEVAKY 461 + +++ G + L +LL G + F KG+ + + + K+ Sbjct: 59 IAAQEAGVEG---LDDLLTGPTAVAFIKGEAVDTAKVLKKF 96
>RL10_MYCTU (P66044) 50S ribosomal protein L10| Length = 178 Score = 31.2 bits (69), Expect = 1.4 Identities = 26/91 (28%), Positives = 40/91 (43%) Frame = +3 Query: 156 KAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCI 335 +A+K A Q +E T LI + L E+R+ L G + + KNTLI+R Sbjct: 3 RADKATAVADIAAQF-KESTATLITEYRGLTVANLAELRRSLTGSATYAVAKNTLIKRA- 60 Query: 336 KVHSEKTGNKDFLELSNLLVGNVGLIFTKGD 428 + + G + L L VG + F G+ Sbjct: 61 ---ASEAGIEG---LDELFVGPTAIAFVTGE 85
>RL10_MYCBO (P66045) 50S ribosomal protein L10| Length = 178 Score = 31.2 bits (69), Expect = 1.4 Identities = 26/91 (28%), Positives = 40/91 (43%) Frame = +3 Query: 156 KAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCI 335 +A+K A Q +E T LI + L E+R+ L G + + KNTLI+R Sbjct: 3 RADKATAVADIAAQF-KESTATLITEYRGLTVANLAELRRSLTGSATYAVAKNTLIKRA- 60 Query: 336 KVHSEKTGNKDFLELSNLLVGNVGLIFTKGD 428 + + G + L L VG + F G+ Sbjct: 61 ---ASEAGIEG---LDELFVGPTAIAFVTGE 85
>RL10_NOCFA (Q5YPC7) 50S ribosomal protein L10| Length = 176 Score = 30.8 bits (68), Expect = 1.9 Identities = 23/91 (25%), Positives = 44/91 (48%) Frame = +3 Query: 156 KAEKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCI 335 KAEK A + + + + T ++ + +L E+R+ L ++ + KNTL++R Sbjct: 3 KAEKVTAVAE-IAEQFKSSTATVVTEYRGLSVGKLTELRRALGAEATYSVAKNTLVKRA- 60 Query: 336 KVHSEKTGNKDFLELSNLLVGNVGLIFTKGD 428 + + G + L +L VG + F KG+ Sbjct: 61 ---AAEAGVEG---LDDLFVGPTAITFIKGE 85
>SYNE2_HUMAN (Q8WXH0) Nesprin-2 (Nuclear envelope spectrin repeat protein 2)| (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus and actin connecting element protein) (NUANCE protein) Length = 6885 Score = 30.4 bits (67), Expect = 2.4 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%) Frame = +3 Query: 168 KIAYDQKLCQLLEEYTKVLIAVADNVGSKQL---QEIRKGLRGDSIVLMGKNTLIRRCI- 335 ++ + K C+ E T L AD++ +L QE+ KG++ + L + T I+ CI Sbjct: 2937 EVEHKIKFCRQFHEKTSALQEEADSIQRNELLLNQEVNKGVKEEIYNLKDRLTAIKCCIL 2996 Query: 336 ------KVHSEKTGNKDFLELSNL 389 KV N DF +L L Sbjct: 2997 QVLKLKKVFDYIGLNWDFSQLDQL 3020
>RL10_CORDI (Q6NJG6) 50S ribosomal protein L10| Length = 171 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/69 (27%), Positives = 36/69 (52%) Frame = +3 Query: 255 QLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGNKDFLELSNLLVGNVGLIFTKGDLK 434 Q+ E+R+ L D + KNTLI K+ +++ G + L ++L G + F KG+ Sbjct: 35 QITELRRALGSDVQYSVAKNTLI----KLAAKEAGIEG---LDDILTGPTAVAFIKGEAV 87 Query: 435 EVREEVAKY 461 + + + K+ Sbjct: 88 DAAKAMKKF 96
>IF2_PORGI (Q7MXE4) Translation initiation factor IF-2| Length = 979 Score = 29.6 bits (65), Expect = 4.1 Identities = 10/25 (40%), Positives = 20/25 (80%) Frame = -3 Query: 79 ERRVDEDQAREKSEADGLRRRRRFN 5 +++ ED+ RE+++ADG ++R+R N Sbjct: 257 KKKTKEDRQREQNDADGKKKRKRIN 281
>BRCA2_RAT (O35923) Breast cancer type 2 susceptibility protein homolog (Fanconi| anemia group D1 protein homolog) Length = 3343 Score = 28.9 bits (63), Expect = 7.1 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +3 Query: 243 VGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGNKDFLELSNLLV 395 VG L + +K LR S L +NT+ +C+K H+E E S +++ Sbjct: 1655 VGESSLSKGKKWLREQSDKLGTRNTIEIQCVKEHTEDFAGNALYEHSLVII 1705
>PSPC_HUMAN (P11686) Pulmonary surfactant-associated protein C precursor (SP-C)| (SP5) (Pulmonary surfactant-associated proteolipid SPL(Val)) Length = 197 Score = 28.9 bits (63), Expect = 7.1 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = +2 Query: 176 VRPEALPVARGVHQGAHRRRRQCRLQAAPGDPQGSPR*LHRAHGQEHPDPP 328 + PE++P +++ H + +C LQA P P L +A G++ P Sbjct: 126 IAPESIPSLEALNRKVHNFQMECSLQAKPAVPTSK---LGQAEGRDAGSAP 173
>EGO_ECOLI (P77257) Putative ABC transporter ATP-binding protein ego (EGO10A)| Length = 511 Score = 28.9 bits (63), Expect = 7.1 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +3 Query: 240 NVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGNKDFLELSNLLVGNVGLIFT 419 +V +Q+ EI +GL DS +L+ L + +T + F L LL VG++F Sbjct: 142 DVADRQMVEILRGLMRDSRILI----LDEPTASLTPAET-ERLFSRLQELLATGVGIVFI 196 Query: 420 KGDLKEVRE 446 L E+R+ Sbjct: 197 SHKLPEIRQ 205
>RL10_CORJK (Q4JT29) 50S ribosomal protein L10| Length = 171 Score = 28.5 bits (62), Expect = 9.2 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%) Frame = +3 Query: 162 EKKIAYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKV 341 E K ++Q LL EY + +A + E+R+ L D + KNT+ IK+ Sbjct: 12 ELKARFEQAQSTLLTEYRGLSVA--------ETTELRRALGSDVTYSVAKNTM----IKL 59 Query: 342 HSEKTGNKDFLEL-SNLLVGNVGLIFTKGD 428 + + G +EL +LL G + F G+ Sbjct: 60 AAREAG----IELDESLLTGPTAIAFVNGE 85
>NIR_NEUCR (P38681) Nitrite reductase [NAD(P)H] (EC 1.7.1.4)| Length = 1176 Score = 28.5 bits (62), Expect = 9.2 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 231 VADNVG-SKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGNKDF 371 V D+VG + +L+E KGLRG + G + R C + GNKDF Sbjct: 727 VGDSVGMAVRLEERYKGLRGPHKIKGGVSGCTREC-----AEAGNKDF 769
>SYA_MYCGE (P47534) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 900 Score = 28.5 bits (62), Expect = 9.2 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +3 Query: 174 AYDQKLCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIR 326 A +QKL QL E KVL + ++ +L+E+++ L D +L K T +R Sbjct: 716 AENQKLIQLKSELEKVLSLIDSSIFKVELKELQQRL--DKFILPEKITQLR 764
>RL10_MYCPA (Q73SE9) 50S ribosomal protein L10| Length = 196 Score = 28.5 bits (62), Expect = 9.2 Identities = 20/80 (25%), Positives = 35/80 (43%) Frame = +3 Query: 189 LCQLLEEYTKVLIAVADNVGSKQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHSEKTGNKD 368 + + +E T LI + L E+R+ L G + + KNTL++R + + G + Sbjct: 13 IAEQFKEATATLITEYRGLTVANLAELRRSLSGAATYSVAKNTLVKRA----ASEAGIEG 68 Query: 369 FLELSNLLVGNVGLIFTKGD 428 L L G + F G+ Sbjct: 69 ---LDELFAGPTAIAFVTGE 85
>Y037_MYCPN (P75077) Hypothetical protein MPN037 (B01_orf147)| Length = 147 Score = 28.5 bits (62), Expect = 9.2 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Frame = -3 Query: 277 PLRISWSCLEPTLSATAM---STLVYSSSNWQSFWSYAIFFSALVLLIAIGAATGWTEAL 107 P I+ S TLS+T + L S S + S WS+ +S L + TG T L Sbjct: 28 PWTITTSVSRSTLSSTTWILWTWLFNSVSIFVSRWSFDFLYSLNSLRVTYSVFTGITGLL 87 Query: 106 TLDC 95 +L+C Sbjct: 88 SLNC 91 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,947,222 Number of Sequences: 219361 Number of extensions: 766944 Number of successful extensions: 3141 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 3048 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3121 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
