ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart08g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476301.2| Oryza sativa (japonica cultivar-group), mRNA 208 9e-51
2gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete se... 208 9e-51
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 208 9e-51
4dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic D... 208 9e-51
5dbj|AK105690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 9e-51
6dbj|AK068474.1| Oryza sativa (japonica cultivar-group) cDNA clon... 208 9e-51
7gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence 145 1e-31
8ref|NM_124534.2| Arabidopsis thaliana unknown protein AT5G51550 ... 42 1.2
9ref|NM_191206.1| Oryza sativa (japonica cultivar-group), predic... 42 1.2
10gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosyntheti... 42 1.2
11emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 1.2
12emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 42 1.2
13gb|AY103306.1| Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, co... 42 1.2
14gb|AE011873.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.2
15gb|AY058883.1| Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, co... 42 1.2
16gb|AF428325.1|AF428325 Arabidopsis thaliana AT5g51550/K17N15_10 ... 42 1.2
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
18emb|BX821853.1|CNS0A8AB Arabidopsis thaliana Full-length cDNA Co... 42 1.2
19emb|BX832775.1|CNS0A0KF Arabidopsis thaliana Full-length cDNA Co... 42 1.2
20emb|BX831378.1|CNS0A0O9 Arabidopsis thaliana Full-length cDNA Co... 42 1.2
21dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
22gb|AY087269.1| Arabidopsis thaliana clone 33455 mRNA, complete s... 42 1.2
23gb|AE005107.1| Halobacterium sp. NRC-1 section 138 of 170 of the... 42 1.2
24dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 1.2
25gb|AY666490.1| Anas platyrhynchos voucher 1B-3367 cytochrome oxi... 40 4.6
26gb|AY666496.1| Anas platyrhynchos voucher 1B-3638 cytochrome oxi... 40 4.6
27gb|AY666221.1| Anas rubripes voucher 1B-726 cytochrome oxidase s... 40 4.6
28gb|AY666211.1| Anas rubripes voucher 1B-711 cytochrome oxidase s... 40 4.6
29gb|AY666405.1| Anas crecca voucher 1B-2590 cytochrome oxidase su... 40 4.6
30ref|XM_466501.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.6
31ref|NM_190003.1| Oryza sativa (japonica cultivar-group), predic... 40 4.6
32ref|XM_478424.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.6
33ref|XM_478215.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.6
34ref|XM_883530.1| Leishmania major strain Friedlin hypothetical p... 40 4.6
35emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 40 4.6
36gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 4.6
37gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.6
38dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
40dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
41dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
42dbj|AP003234.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
43gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.6
44dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
45dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
46dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
47dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
48dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
49dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
50dbj|AK121812.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
51dbj|AK069976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
52dbj|AK064235.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
53gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 4.6
54gb|AY662783.1| Pterophyllum scalare cytochrome oxidase subunit I... 40 4.6 
>ref|XM_476301.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1348

 Score =  208 bits (105), Expect = 9e-51
 Identities = 150/165 (90%)
 Strand = Plus / Plus

                                                                       
Query: 173 tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 232
           |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 217 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 276

                                                                       
Query: 233 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 292
           ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 277 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 336

                                                        
Query: 293 accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 337
           | |||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 337 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 381
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>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence
          Length = 136866

 Score =  208 bits (105), Expect = 9e-51
 Identities = 150/165 (90%)
 Strand = Plus / Plus

                                                                          
Query: 173    tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 232
              |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 109368 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 109427

                                                                          
Query: 233    gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 292
              ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 109428 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 109487

                                                           
Query: 293    accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 337
              | |||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 109488 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 109532
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  208 bits (105), Expect = 9e-51
 Identities = 150/165 (90%)
 Strand = Plus / Plus

                                                                           
Query: 173     tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 232
               |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 1789152 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 1789211

                                                                           
Query: 233     gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 292
               ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 1789212 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 1789271

                                                            
Query: 293     accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 337
               | |||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 1789272 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 1789316
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>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0679C08
          Length = 156266

 Score =  208 bits (105), Expect = 9e-51
 Identities = 150/165 (90%)
 Strand = Plus / Plus

                                                                          
Query: 173    tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 232
              |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 114301 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 114360

                                                                          
Query: 233    gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 292
              ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 114361 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 114420

                                                           
Query: 293    accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 337
              | |||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 114421 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 114465
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>dbj|AK105690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C03, full
           insert sequence
          Length = 1482

 Score =  208 bits (105), Expect = 9e-51
 Identities = 150/165 (90%)
 Strand = Plus / Plus

                                                                       
Query: 173 tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 232
           |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 245 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 304

                                                                       
Query: 233 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 292
           ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 305 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggcccgccg 364

                                                        
Query: 293 accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 337
           | |||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 365 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 409
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>dbj|AK068474.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155H19, full
           insert sequence
          Length = 1351

 Score =  208 bits (105), Expect = 9e-51
 Identities = 150/165 (90%)
 Strand = Plus / Plus

                                                                       
Query: 173 tcggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgg 232
           |||| |||||||||||||||||||||||||| ||  ||||||||||  ||||||||||||
Sbjct: 219 tcggggcgtccaagaagttcgaggggtcgtcggatttcgtcaagctgcagtaccacatgg 278

                                                                       
Query: 233 gccccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccg 292
           ||||||||||||||||||||||||| |||||||||||||||||||||   ||||| ||||
Sbjct: 279 gccccgtcctcgccgccgacatcacggtccacccgatctggtacggccggtggccagccg 338

                                                        
Query: 293 accagaagcgcaccatccgcgccttcctccgctccctctcgccgc 337
           | |||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 339 agcagaagcgcaccatccgcgcgttcctccggtcgctctcgccgc 383
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>gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence
          Length = 130987

 Score =  145 bits (73), Expect = 1e-31
 Identities = 139/161 (86%)
 Strand = Plus / Plus

                                                                          
Query: 175    ggcgcgtccaagaagttcgaggggtcgtccgacctcgtcaagctcgagtaccacatgggc 234
              ||||| || |||||||||||||| ||||| ||  |||| ||||| |||||||||||||| 
Sbjct: 101784 ggcgcttcaaagaagttcgagggctcgtcggagttcgtgaagctagagtaccacatgggt 101843

                                                                          
Query: 235    cccgtcctcgccgccgacatcaccgtccacccgatctggtacggcgcctggccggccgac 294
              |||||||| ||  ||| |||||| || |||||||||||||| ||||||||||| ||||  
Sbjct: 101844 cccgtcctggcgtccgccatcacggtgcacccgatctggtatggcgcctggcccgccgcg 101903

                                                       
Query: 295    cagaagcgcaccatccgcgccttcctccgctccctctcgcc 335
              ||||||||||| |||||||| ||||||||||||||| ||||
Sbjct: 101904 cagaagcgcacgatccgcgcgttcctccgctccctcgcgcc 101944
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>ref|NM_124534.2| Arabidopsis thaliana unknown protein AT5G51550 mRNA, complete cds
          Length = 1402

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 251 acatcaccgtccacccgatctggtacggc 279
           |||||||||| ||||| ||||||||||||
Sbjct: 286 acatcaccgttcacccaatctggtacggc 314
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>ref|NM_191206.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1071

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 gtggccgccctcggcgcgtcc 183
           |||||||||||||||||||||
Sbjct: 529 gtggccgccctcggcgcgtcc 549
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>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster,
             complete sequence
          Length = 135638

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   cgccgtggccgccctcggcgc 179
             |||||||||||||||||||||
Sbjct: 34902 cgccgtggccgccctcggcgc 34882
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 264     cccgatctggtacggcgcctggccg 288
               |||||||||| ||||||||||||||
Sbjct: 2892204 cccgatctgggacggcgcctggccg 2892228
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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 30     cggtaaaccgcgcgtcattcc 50
              |||||||||||||||||||||
Sbjct: 772616 cggtaaaccgcgcgtcattcc 772596
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>gb|AY103306.1| Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, complete cds
          Length = 1014

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 251 acatcaccgtccacccgatctggtacggc 279
           |||||||||| ||||| ||||||||||||
Sbjct: 197 acatcaccgttcacccaatctggtacggc 225
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>gb|AE011873.1| Xanthomonas axonopodis pv. citri str. 306,  section 251 of 469 of the
            complete genome
          Length = 10565

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 264  cccgatctggtacggcgcctggccg 288
            |||||||||| ||||||||||||||
Sbjct: 7807 cccgatctgggacggcgcctggccg 7831
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>gb|AY058883.1| Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, complete cds
          Length = 1221

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 251 acatcaccgtccacccgatctggtacggc 279
           |||||||||| ||||| ||||||||||||
Sbjct: 285 acatcaccgttcacccaatctggtacggc 313
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>gb|AF428325.1|AF428325 Arabidopsis thaliana AT5g51550/K17N15_10 mRNA, complete cds
          Length = 1211

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 251 acatcaccgtccacccgatctggtacggc 279
           |||||||||| ||||| ||||||||||||
Sbjct: 282 acatcaccgttcacccaatctggtacggc 310
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 163      gtggccgccctcggcgcgtcc 183
                |||||||||||||||||||||
Sbjct: 31314509 gtggccgccctcggcgcgtcc 31314489



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 308      tccgcgccttcctccgctccctct 331
                |||||||| |||||||||||||||
Sbjct: 40763888 tccgcgccctcctccgctccctct 40763865



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 236      ccgtcctcgccgccgacatc 255
                ||||||||||||||||||||
Sbjct: 25998071 ccgtcctcgccgccgacatc 25998052
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>emb|BX821853.1|CNS0A8AB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL7ZB01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 978

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 251 acatcaccgtccacccgatctggtacggc 279
           |||||||||| ||||| ||||||||||||
Sbjct: 554 acatcaccgttcacccaatctggtacggc 526
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>emb|BX832775.1|CNS0A0KF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL10ZD05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1193

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 251 acatcaccgtccacccgatctggtacggc 279
           |||||||||| ||||| ||||||||||||
Sbjct: 264 acatcaccgttcacccaatctggtacggc 292
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>emb|BX831378.1|CNS0A0O9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS84ZD11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1234

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 251 acatcaccgtccacccgatctggtacggc 279
           |||||||||| ||||| ||||||||||||
Sbjct: 268 acatcaccgttcacccaatctggtacggc 296
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>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0481E12
          Length = 161563

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 163   gtggccgccctcggcgcgtcc 183
             |||||||||||||||||||||
Sbjct: 68792 gtggccgccctcggcgcgtcc 68772
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>gb|AY087269.1| Arabidopsis thaliana clone 33455 mRNA, complete sequence
          Length = 1272

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 251 acatcaccgtccacccgatctggtacggc 279
           |||||||||| ||||| ||||||||||||
Sbjct: 286 acatcaccgttcacccaatctggtacggc 314
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>gb|AE005107.1| Halobacterium sp. NRC-1 section 138 of 170 of the complete genome
          Length = 13368

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   ccgtggccgccctcggcgcgt 181
             |||||||||||||||||||||
Sbjct: 12048 ccgtggccgccctcggcgcgt 12028
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>dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17N15
          Length = 81293

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 251   acatcaccgtccacccgatctggtacggc 279
             |||||||||| ||||| ||||||||||||
Sbjct: 39185 acatcaccgttcacccaatctggtacggc 39157
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>gb|AY666490.1| Anas platyrhynchos voucher 1B-3367 cytochrome oxidase subunit 1
           (COI) gene, partial cds; mitochondrial
          Length = 694

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 234 ccccgtcctcgccgccgacatcac 257
           ||||||||||||||||| ||||||
Sbjct: 547 ccccgtcctcgccgccggcatcac 570
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>gb|AY666496.1| Anas platyrhynchos voucher 1B-3638 cytochrome oxidase subunit 1
           (COI) gene, partial cds; mitochondrial
          Length = 694

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 234 ccccgtcctcgccgccgacatcac 257
           ||||||||||||||||| ||||||
Sbjct: 547 ccccgtcctcgccgccggcatcac 570
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>gb|AY666221.1| Anas rubripes voucher 1B-726 cytochrome oxidase subunit 1 (COI)
           gene, partial cds; mitochondrial
          Length = 692

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 234 ccccgtcctcgccgccgacatcac 257
           ||||||||||||||||| ||||||
Sbjct: 545 ccccgtcctcgccgccggcatcac 568
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>gb|AY666211.1| Anas rubripes voucher 1B-711 cytochrome oxidase subunit 1 (COI)
           gene, partial cds; mitochondrial
          Length = 694

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 234 ccccgtcctcgccgccgacatcac 257
           ||||||||||||||||| ||||||
Sbjct: 547 ccccgtcctcgccgccggcatcac 570
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>gb|AY666405.1| Anas crecca voucher 1B-2590 cytochrome oxidase subunit 1 (COI)
           gene, partial cds; mitochondrial
          Length = 649

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 234 ccccgtcctcgccgccgacatcac 257
           ||||||||||||||||| ||||||
Sbjct: 502 ccccgtcctcgccgccggcatcac 525
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>ref|XM_466501.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1861

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 ccgcgccttcctccgctccc 328
           ||||||||||||||||||||
Sbjct: 421 ccgcgccttcctccgctccc 440
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>ref|NM_190003.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1494

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 308 tccgcgccttcctccgctccctct 331
           |||||||| |||||||||||||||
Sbjct: 86  tccgcgccctcctccgctccctct 109
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>ref|XM_478424.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2115

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 atgggccccgtcctcgccgc 248
           ||||||||||||||||||||
Sbjct: 186 atgggccccgtcctcgccgc 167
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>ref|XM_478215.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1361

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 agtaccacatgggccccgtc 240
           ||||||||||||||||||||
Sbjct: 137 agtaccacatgggccccgtc 156
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>ref|XM_883530.1| Leishmania major strain Friedlin hypothetical protein (L2385.05)
            partial mRNA
          Length = 2631

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  ctcgccgccgacatcaccgt 260
            ||||||||||||||||||||
Sbjct: 1776 ctcgccgccgacatcaccgt 1795
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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    ctcgccgccgacatcaccgt 260
              ||||||||||||||||||||
Sbjct: 194124 ctcgccgccgacatcaccgt 194105
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    cctcgccgccgacatcaccg 259
              ||||||||||||||||||||
Sbjct: 118192 cctcgccgccgacatcaccg 118211
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    cctcgccgccgacatcaccg 259
              ||||||||||||||||||||
Sbjct: 771925 cctcgccgccgacatcaccg 771906
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 229      atgggccccgtcctcgccgc 248
                ||||||||||||||||||||
Sbjct: 19885225 atgggccccgtcctcgccgc 19885206



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 221      agtaccacatgggccccgtc 240
                ||||||||||||||||||||
Sbjct: 18564848 agtaccacatgggccccgtc 18564867
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 309      ccgcgccttcctccgctccc 328
                ||||||||||||||||||||
Sbjct: 22998643 ccgcgccttcctccgctccc 22998662
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>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0052O12
          Length = 167881

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 308   tccgcgccttcctccgctccctct 331
             |||||||| |||||||||||||||
Sbjct: 66534 tccgcgccctcctccgctccctct 66511
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>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0707D10
          Length = 172003

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   ccgtcctcgccgccgacatc 255
             ||||||||||||||||||||
Sbjct: 94138 ccgtcctcgccgccgacatc 94119
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>dbj|AP003234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0038D11
          Length = 156465

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 236  ccgtcctcgccgccgacatc 255
            ||||||||||||||||||||
Sbjct: 1646 ccgtcctcgccgccgacatc 1627
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 160     gccgtggccgccctcggcgc 179
               ||||||||||||||||||||
Sbjct: 3475332 gccgtggccgccctcggcgc 3475313
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>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0005E02
          Length = 89380

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   agtaccacatgggccccgtc 240
             ||||||||||||||||||||
Sbjct: 17390 agtaccacatgggccccgtc 17409
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>dbj|AP004079.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1067_B01
          Length = 100525

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   ccgcgccttcctccgctccc 328
             ||||||||||||||||||||
Sbjct: 23040 ccgcgccttcctccgctccc 23059
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>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0016G10
          Length = 143211

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    ccgcgccttcctccgctccc 328
              ||||||||||||||||||||
Sbjct: 118445 ccgcgccttcctccgctccc 118464
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>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0036M16
          Length = 158880

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   atgggccccgtcctcgccgc 248
             ||||||||||||||||||||
Sbjct: 49875 atgggccccgtcctcgccgc 49856
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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1457_D07
          Length = 103688

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   agtaccacatgggccccgtc 240
             ||||||||||||||||||||
Sbjct: 93604 agtaccacatgggccccgtc 93623
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>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0650C03
          Length = 144337

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    atgggccccgtcctcgccgc 248
              ||||||||||||||||||||
Sbjct: 125384 atgggccccgtcctcgccgc 125365
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>dbj|AK121812.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098C24, full
           insert sequence
          Length = 2185

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 atgggccccgtcctcgccgc 248
           ||||||||||||||||||||
Sbjct: 54  atgggccccgtcctcgccgc 35
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>dbj|AK069976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035N02, full
           insert sequence
          Length = 1861

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 ccgcgccttcctccgctccc 328
           ||||||||||||||||||||
Sbjct: 421 ccgcgccttcctccgctccc 440
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>dbj|AK064235.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H11, full
           insert sequence
          Length = 1361

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 agtaccacatgggccccgtc 240
           ||||||||||||||||||||
Sbjct: 137 agtaccacatgggccccgtc 156
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 276     cggcgcctggccggccgacc 295
               ||||||||||||||||||||
Sbjct: 3408867 cggcgcctggccggccgacc 3408848
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>gb|AY662783.1| Pterophyllum scalare cytochrome oxidase subunit I gene, partial
           cds; mitochondrial
          Length = 649

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 234 ccccgtcctcgccgccgacatcac 257
           ||||||||||||||||| ||||||
Sbjct: 547 ccccgtcctcgccgccggcatcac 570


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,205,457
Number of Sequences: 3902068
Number of extensions: 1205457
Number of successful extensions: 34161
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33451
Number of HSP's gapped (non-prelim): 710
length of query: 345
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 323
effective length of database: 17,147,199,772
effective search space: 5538545526356
effective search space used: 5538545526356
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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