ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08g04 |
|---|---|
| Clone Library Name | barley_pub |
>UBLH2_SCHPO (Q9UUB6) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)| Length = 300 Score = 110 bits (275), Expect = 2e-24 Identities = 56/99 (56%), Positives = 72/99 (72%), Gaps = 3/99 (3%) Frame = +1 Query: 187 MSWCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSLSQLQPVYGLIFLFKWMPGGNDE 366 MSW TIESD GVFT+LI+ + VK V+V+ELYSLDVDSL Q +YG+IFLFKW + Sbjct: 1 MSWTTIESDAGVFTDLIENLGVKDVEVDELYSLDVDSLRQFPDIYGIIFLFKW--NSKVD 58 Query: 367 RP---VVSDPXPNLFFARQVITNACATXAILSILMNRPE 474 +P + D N+FFA+QVI NACAT A+LS+L+N + Sbjct: 59 KPDGTMDYDSMDNIFFAKQVINNACATQALLSVLLNHSD 97
>UCHL5_MOUSE (Q9WUP7) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC| 3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37) Length = 329 Score = 110 bits (275), Expect = 2e-24 Identities = 53/92 (57%), Positives = 68/92 (73%), Gaps = 1/92 (1%) Frame = +1 Query: 193 WCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSLSQLQPVYGLIFLFKWMPGGNDERP 372 WC +ESDPGVFTELI+ +G QVEE++SL+ +S +L+PV+GLIFLFKW PG Sbjct: 8 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPESFEKLKPVHGLIFLFKWQPGEEPAGS 67 Query: 373 VVSDP-XPNLFFARQVITNACATXAILSILMN 465 VV D +FFA+QVI NACAT AI+S+L+N Sbjct: 68 VVQDSRLETIFFAKQVINNACATQAIVSVLLN 99
>UCHL5_BOVIN (Q9XSJ0) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC| 3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37) Length = 328 Score = 109 bits (272), Expect = 4e-24 Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 1/92 (1%) Frame = +1 Query: 193 WCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSLSQLQPVYGLIFLFKWMPGGNDERP 372 WC +ESDPGVFTELI+ +G QVEE++SL+ ++ +L+PV+GLIFLFKW PG Sbjct: 8 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGS 67 Query: 373 VVSDP-XPNLFFARQVITNACATXAILSILMN 465 VV D +FFA+QVI NACAT AI+S+L+N Sbjct: 68 VVQDSRLDTIFFAKQVINNACATQAIVSVLLN 99
>UCHL5_HUMAN (Q9Y5K5) Ubiquitin carboxyl-terminal hydrolase isozyme L5 (EC| 3.4.19.12) (UCH-L5) (Ubiquitin thioesterase L5) (Ubiquitin C-terminal hydrolase UCH37) Length = 329 Score = 109 bits (272), Expect = 4e-24 Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 1/92 (1%) Frame = +1 Query: 193 WCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSLSQLQPVYGLIFLFKWMPGGNDERP 372 WC +ESDPGVFTELI+ +G QVEE++SL+ ++ +L+PV+GLIFLFKW PG Sbjct: 8 WCLMESDPGVFTELIKGFGCRGAQVEEIWSLEPENFEKLKPVHGLIFLFKWQPGEEPAGS 67 Query: 373 VVSDP-XPNLFFARQVITNACATXAILSILMN 465 VV D +FFA+QVI NACAT AI+S+L+N Sbjct: 68 VVQDSRLDTIFFAKQVINNACATQAIVSVLLN 99
>UBH4_CAEEL (Q09444) Probable ubiquitin carboxyl-terminal hydrolase ubh-4 (EC| 3.4.19.12) (Ubiquitin C-terminal hydrolase family 1 member 4) (Ubiquitin thioesterase 4) Length = 321 Score = 106 bits (264), Expect = 4e-23 Identities = 53/92 (57%), Positives = 65/92 (70%) Frame = +1 Query: 190 SWCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSLSQLQPVYGLIFLFKWMPGGNDER 369 SWC IESDPGVFTE+++ V G+QVEELYSLD D + +P YGLIFLFKW G DE Sbjct: 6 SWCLIESDPGVFTEMLRGFGVDGLQVEELYSLD-DDKAMTRPTYGLIFLFKWRQG--DET 62 Query: 370 PVVSDPXPNLFFARQVITNACATXAILSILMN 465 + N+FFA Q I NACAT A++++LMN Sbjct: 63 TGIPSDKQNIFFAHQTIQNACATQALINLLMN 94
>BAP1_MOUSE (Q99PU7) Ubiquitin carboxyl-terminal hydrolase BAP1 (EC 3.4.19.12)| (BRCA1-associated protein 1) (Ubiquitin C-terminal hydrolase X4) (UCH-X4) Length = 728 Score = 88.6 bits (218), Expect = 8e-18 Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 10/101 (9%) Frame = +1 Query: 193 WCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSLSQLQPVYGLIFLFKWMPGGNDERP 372 W +ESDPG+FT L+++ VKGVQVEE+Y D+ S Q PVYG IFLFKW+ R Sbjct: 5 WLELESDPGLFTLLVEDFGVKGVQVEEIY--DLQSKCQ-GPVYGFIFLFKWIEERRSRRK 61 Query: 373 VVS----------DPXPNLFFARQVITNACATXAILSILMN 465 V + D N+FFA Q+I N+CAT A+LS+L+N Sbjct: 62 VSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLN 102
>BAP1_HUMAN (Q92560) Ubiquitin carboxyl-terminal hydrolase BAP1 (EC 3.4.19.12)| (BRCA1-associated protein 1) (Cerebral protein 6) Length = 729 Score = 88.6 bits (218), Expect = 8e-18 Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 10/101 (9%) Frame = +1 Query: 193 WCTIESDPGVFTELIQEMQVKGVQVEELYSLDVDSLSQLQPVYGLIFLFKWMPGGNDERP 372 W +ESDPG+FT L+++ VKGVQVEE+Y D+ S Q PVYG IFLFKW+ R Sbjct: 5 WLELESDPGLFTLLVEDFGVKGVQVEEIY--DLQSKCQ-GPVYGFIFLFKWIEERRSRRK 61 Query: 373 VVS----------DPXPNLFFARQVITNACATXAILSILMN 465 V + D N+FFA Q+I N+CAT A+LS+L+N Sbjct: 62 VSTLVDDTSVIDDDIVNNMFFAHQLIPNSCATHALLSVLLN 102
>UCHL_DROME (P35122) Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)| (Ubiquitin thioesterase) Length = 227 Score = 43.1 bits (100), Expect = 4e-04 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 10/106 (9%) Frame = +1 Query: 187 MSWCTIESDPGVFTELIQEMQVKGV-QVEELYSLDVDSLSQL-QPVYGLIFLF------- 339 ++W +ES+P V T+ I ++ V V ++ L+ D+L + +PV I LF Sbjct: 2 LTWTPLESNPEVLTKYIHKLGVSPAWSVTDVIGLEDDTLEWIPRPVKAFILLFPCSETYE 61 Query: 340 KWMPGGNDERPVVSDPXP-NLFFARQVITNACATXAILSILMNRPE 474 K +D V + P +LF+ RQ NAC T A++ + N E Sbjct: 62 KHRAEEHDRIKEVEEQHPEDLFYMRQFTHNACGTVALIHSVANNKE 107
>UCHL_APLCA (O01391) Ubiquitin carboxyl-terminal hydrolase (EC 3.4.19.12)| (Ubiquitin thioesterase) Length = 214 Score = 39.7 bits (91), Expect = 0.004 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%) Frame = +1 Query: 193 WCTIESDPGVFTELIQEMQVK-GVQVEELYSLDVDSLSQL-QPVYGLIFLFKWMPGGNDE 366 W +ES+P V + + + + G +++ LD + L+ + +P L+ LF D+ Sbjct: 7 WIPLESNPKVLNKYVHNLGMDAGWNFVDVFGLDPELLAMVPRPAAALVLLFP------DD 60 Query: 367 RPVV--------SDPXPNLFFARQVITNACATXAILSILMN 465 + V SD +L++ +Q I NAC T AI+ L N Sbjct: 61 KETVNQLIGEYQSDYPDSLYYTKQTIGNACGTVAIVHALAN 101
>UBL1_YEAST (P35127) Ubiquitin carboxyl-terminal hydrolase YUH1 (EC 3.4.19.12)| (Ubiquitin thioesterase) Length = 236 Score = 33.1 bits (74), Expect = 0.39 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%) Frame = +1 Query: 202 IESDPGVFTELIQEMQVKGVQVE-ELYSLDVDSLSQL--QPVYGLIFLFKWMPGGNDERP 372 IES+P VFT ++ +K ++YSL L +PV ++ LF P D + Sbjct: 11 IESNPEVFTNFAHKLGLKNEWAYFDIYSLTEPELLAFLPRPVKAIVLLF---PINEDRKS 67 Query: 373 VVSDPXPNLF---FARQVITNACATXAILSILMN 465 S + + + +Q + NAC AIL L N Sbjct: 68 STSQQITSSYDVIWFKQSVKNACGLYAILHSLSN 101
>AMPA_PHOLL (Q7MZ27) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine| aminopeptidase) (LAP) (Leucyl aminopeptidase) Length = 506 Score = 29.6 bits (65), Expect = 4.3 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = +3 Query: 222 FHRVDSGDASKRCTGG---GALLSRCGLS*STTASVWVNFSLQVDAWR 356 F ++DS A TGG GA+ + C LS T W + + AWR Sbjct: 427 FEQIDSNFADLANTGGSGGGAITAACFLSRFATKYHWAHLDIAGTAWR 474
>SEC2_YEAST (P17065) Rab guanine nucleotide exchange factor SEC2 (GDP-GTP| exchange factor SEC2) Length = 759 Score = 28.5 bits (62), Expect = 9.6 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = +3 Query: 132 SPRFASLARCCAVGGSSEDVVVHDRVR-PRCFHRVDSGDASKRCTGGGALLSRCGLS*ST 308 SP A A C G S +D++ H R+ + H+ D D ++ T L C L Sbjct: 325 SPPVAVHAACSFCGESRDDIIEHARMYILKTLHKTD--DGKEQVTNTYPLCHWCLLKLRQ 382 Query: 309 TASVWVNF-SLQVDAW 353 T ++ SL+V AW Sbjct: 383 TCEIFAFLRSLKVGAW 398 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,391,841 Number of Sequences: 219361 Number of extensions: 920159 Number of successful extensions: 2256 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2244 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
