ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart08g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
15NG4_PINTA (Q6J163) Auxin-induced protein 5NG4 35 0.10
2NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 prec... 30 3.3
3NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 pr... 30 3.3
4PPDK_GIALA (P51776) Pyruvate, phosphate dikinase (EC 2.7.9.1) (P... 30 5.6

>5NG4_PINTA (Q6J163) Auxin-induced protein 5NG4|
          Length = 410

 Score = 35.4 bits (80), Expect = 0.10
 Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
 Frame = +1

Query: 139 ERHKPCVAMVLVQLFYSLVDMALKTAYGLGMRPIVFVAYRQGIXXXXXXXXXXXXRGLTL 318
           ER K   AM+ +Q  Y+   +  + A  +G+  +VF  YR  I                 
Sbjct: 15  ERVKLHAAMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRN-ILALMLIGPCAYFLEKKE 73

Query: 319 RPMAVGPRXXXXXXXXXXXXXTGQY-FYFMGLHLASPSMARATTNLAPGITFAIAAVIGL 495
           RP A+                TGQ     + + L  P+ A A  N  P ITF +AA + L
Sbjct: 74  RP-ALTLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRL 132

Query: 496 EKVDLRSSRSIAQI 537
           EKV +     +A+I
Sbjct: 133 EKVHISRRDGLAKI 146



to top

>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch 1)|
            [Contains: Notch 1 extracellular truncation; Notch 1
            intracellular domain]
          Length = 2531

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 37   WLPRVRRGGIPGQWSLLAPGIS 102
            WLPR++ G +P Q++ L PG++
Sbjct: 2300 WLPRLQNGMVPSQYNPLRPGVT 2321



to top

>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch 1)|
            (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular
            truncation; Notch 1 intracellular domain]
          Length = 2531

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 37   WLPRVRRGGIPGQWSLLAPGIS 102
            WLPR++ G +P Q++ L PG++
Sbjct: 2300 WLPRLQNGMVPSQYNPLRPGVT 2321



to top

>PPDK_GIALA (P51776) Pyruvate, phosphate dikinase (EC 2.7.9.1) (Pyruvate,|
           orthophosphate dikinase)
          Length = 884

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 228 AEPVGRLERHVHQRVEELHQ 169
           AE + +  RH+H+RVE+LH+
Sbjct: 647 AEDMNKKHRHIHERVEDLHE 666


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,717,812
Number of Sequences: 219361
Number of extensions: 557685
Number of successful extensions: 1803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1801
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top