ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart08g03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030H08, full insert sequence Length = 1405 Score = 272 bits (137), Expect = 1e-69 Identities = 182/197 (92%) Strand = Plus / Plus Query: 319 cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgccagc 378 |||| ||||||||||||| ||| || ||||||||||||||| |||||||||||||||| Sbjct: 257 cgccacatggccgtcggcgccccggcgttcgccctcctcttcgccgcctccctcgccagc 316 Query: 379 gcgacggggcagtacttctacttcatggggctgcatctcgcgtcgccgtccatggcccgg 438 |||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||| || Sbjct: 317 gcgacgggtctgtacttctacttcctggggctgcagctcgcgtcgccgtccatggccagg 376 Query: 439 gccaccaccaacctcgcccccggcatcaccttcgccatcgccgccgtcatcgggttggag 498 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 377 gccaccaccaacctcgcccccggcattaccttcgccatcgccgccgtaatcgggttggag 436 Query: 499 aaggtggacttgaggag 515 |||||||| |||||||| Sbjct: 437 aaggtggatttgaggag 453 Score = 115 bits (58), Expect = 2e-22 Identities = 100/114 (87%) Strand = Plus / Plus Query: 150 gccgtgcgtggccatggtgctggtgcagctcttctactcgctggtggacatggcgctcaa 209 ||||||||||| |||||| |||||||| |||||| || |||||||||||||||||| Sbjct: 85 gccgtgcgtggggatggtgatggtgcagtggttctacgcggcggtggacatggcgctcaa 144 Query: 210 gacggcctacgggctcggcatgcgccccatcgtcttcgtcgcctaccgccaggg 263 | |||| |||||| | || ||||||||||||||||||||||||||||||||||| Sbjct: 145 ggcggcgtacgggatggggatgcgccccatcgtcttcgtcgcctaccgccaggg 198
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 180 bits (91), Expect = 3e-42 Identities = 112/119 (94%) Strand = Plus / Minus Query: 375 cagcgcgacggggcagtacttctacttcatggggctgcatctcgcgtcgccgtccatggc 434 |||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||||| Sbjct: 15394923 cagcgcgacgggtctgtacttctacttcctggggctgcagctcgcgtcgccgtccatggc 15394864 Query: 435 ccgggccaccaccaacctcgcccccggcatcaccttcgccatcgccgccgtcatcgggt 493 | |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 15394863 cagggccaccaccaacctcgcccccggcattaccttcgccatcgccgccgtaatcgggt 15394805 Score = 115 bits (58), Expect = 2e-22 Identities = 100/114 (87%) Strand = Plus / Minus Query: 150 gccgtgcgtggccatggtgctggtgcagctcttctactcgctggtggacatggcgctcaa 209 ||||||||||| |||||| |||||||| |||||| || |||||||||||||||||| Sbjct: 15395247 gccgtgcgtggggatggtgatggtgcagtggttctacgcggcggtggacatggcgctcaa 15395188 Query: 210 gacggcctacgggctcggcatgcgccccatcgtcttcgtcgcctaccgccaggg 263 | |||| |||||| | || ||||||||||||||||||||||||||||||||||| Sbjct: 15395187 ggcggcgtacgggatggggatgcgccccatcgtcttcgtcgcctaccgccaggg 15395134 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 319 cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgccag 377 |||| ||||||||||||| ||| || ||||||||||||||| ||||||||||||||| Sbjct: 15395075 cgccacatggccgtcggcgccccggcgttcgccctcctcttcgccgcctccctcgccag 15395017 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Minus Query: 226 ggcatgcgccccatcgtcttcgtcgcctaccgccagg 262 |||||| || |||| |||||||||| ||||||||||| Sbjct: 15414001 ggcatgagcaccatggtcttcgtcgtctaccgccagg 15413965 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 491 ggttggagaaggtggacttgaggag 515 |||||||||||||||| |||||||| Sbjct: 15394586 ggttggagaaggtggatttgaggag 15394562
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 180 bits (91), Expect = 3e-42 Identities = 112/119 (94%) Strand = Plus / Minus Query: 375 cagcgcgacggggcagtacttctacttcatggggctgcatctcgcgtcgccgtccatggc 434 |||||||||||| | ||||||||||||| |||||||||| |||||||||||||||||||| Sbjct: 44215 cagcgcgacgggtctgtacttctacttcctggggctgcagctcgcgtcgccgtccatggc 44156 Query: 435 ccgggccaccaccaacctcgcccccggcatcaccttcgccatcgccgccgtcatcgggt 493 | |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 44155 cagggccaccaccaacctcgcccccggcattaccttcgccatcgccgccgtaatcgggt 44097 Score = 115 bits (58), Expect = 2e-22 Identities = 100/114 (87%) Strand = Plus / Minus Query: 150 gccgtgcgtggccatggtgctggtgcagctcttctactcgctggtggacatggcgctcaa 209 ||||||||||| |||||| |||||||| |||||| || |||||||||||||||||| Sbjct: 44539 gccgtgcgtggggatggtgatggtgcagtggttctacgcggcggtggacatggcgctcaa 44480 Query: 210 gacggcctacgggctcggcatgcgccccatcgtcttcgtcgcctaccgccaggg 263 | |||| |||||| | || ||||||||||||||||||||||||||||||||||| Sbjct: 44479 ggcggcgtacgggatggggatgcgccccatcgtcttcgtcgcctaccgccaggg 44426 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 319 cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgccag 377 |||| ||||||||||||| ||| || ||||||||||||||| ||||||||||||||| Sbjct: 44367 cgccacatggccgtcggcgccccggcgttcgccctcctcttcgccgcctccctcgccag 44309 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Minus Query: 226 ggcatgcgccccatcgtcttcgtcgcctaccgccagg 262 |||||| || |||| |||||||||| ||||||||||| Sbjct: 63293 ggcatgagcaccatggtcttcgtcgtctaccgccagg 63257 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 491 ggttggagaaggtggacttgaggag 515 |||||||||||||||| |||||||| Sbjct: 43878 ggttggagaaggtggatttgaggag 43854
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 319 cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgcc 375 |||| ||||||||||||| ||| || ||||||||||||||| ||||||||||||| Sbjct: 108358 cgccacatggccgtcggcaccccggcgttcgccctcctcttcgccgcctccctcgcc 108414
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 319 cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgcc 375 |||| ||||||||||||| ||| || ||||||||||||||| ||||||||||||| Sbjct: 21415447 cgccacatggccgtcggcaccccggcgttcgccctcctcttcgccgcctccctcgcc 21415503
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 319 cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgcc 375 |||| ||||||||||||| ||| || ||||||||||||||| ||||||||||||| Sbjct: 21408476 cgccacatggccgtcggcaccccggcgttcgccctcctcttcgccgcctccctcgcc 21408532
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 319 cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgcc 375 |||| ||||| ||||||| ||| || ||||||||||||||| ||||||||||||| Sbjct: 33218653 cgccacatggtcgtcggcgccccggcgttcgccctcctcttcgccgcctccctcgcc 33218709
>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1070A12 Length = 148449 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 319 cgccccatggccgtcggcccccgtgccttcgccctcctcttcctcgcctccctcgcc 375 |||| ||||| ||||||| ||| || ||||||||||||||| ||||||||||||| Sbjct: 11900 cgccacatggtcgtcggcgccccggcgttcgccctcctcttcgccgcctccctcgcc 11956
>gb|AC158405.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1366F05, complete sequence Length = 171022 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 162 catggtgctggtgcagctcttct 184 ||||||||||||||||||||||| Sbjct: 119435 catggtgctggtgcagctcttct 119457
>dbj|AK107311.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D08, full insert sequence Length = 1370 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 162 catggtgctggtgcagctcttct 184 ||||||||||||||||||||||| Sbjct: 182 catggtgctggtgcagctcttct 204
>gb|AC157775.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0064O05, complete sequence Length = 28847 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 162 catggtgctggtgcagctcttct 184 ||||||||||||||||||||||| Sbjct: 14814 catggtgctggtgcagctcttct 14792
>ref|XM_813167.1| Trypanosoma cruzi strain CL Brener DNA repair and recombination protein RAD54 (Tc00.1047053508647.290) partial mRNA Length = 3138 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 351 cctcctcttcctcgcctccctc 372 |||||||||||||||||||||| Sbjct: 427 cctcctcttcctcgcctccctc 406
>ref|NM_195386.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041L14.13), mRNA Length = 207 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 161 ccatggtgctggtgcagctcttctactcg 189 |||||||| |||||||||||||| ||||| Sbjct: 56 ccatggtgttggtgcagctcttcaactcg 84
>gb|AC013791.9| Homo sapiens chromosome 11, clone RP11-19N21, complete sequence Length = 174569 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 156 cgtggccatggtgctggtgcagctc 180 ||||||||||||||||| ||||||| Sbjct: 30648 cgtggccatggtgctggagcagctc 30624
>gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 genomic sequence, complete sequence Length = 158742 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 161 ccatggtgctggtgcagctcttctactcg 189 |||||||| |||||||||||||| ||||| Sbjct: 55741 ccatggtgttggtgcagctcttcaactcg 55713
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 tcgccatcgccgccgtcatcg 490 ||||||||||||||||||||| Sbjct: 1362953 tcgccatcgccgccgtcatcg 1362933
>gb|AC001228.1|HSAC001228 244Kb Contig from Human Chromosome 11p15.5 spanning D11S1 through D11S25, complete sequence Length = 244254 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 156 cgtggccatggtgctggtgcagctc 180 ||||||||||||||||| ||||||| Sbjct: 91313 cgtggccatggtgctggagcagctc 91337
>gb|AC005950.1|AC005950 Homo sapiens Chromosome 11p15.5 PAC clone pDJ754h15 containing cdk-inhibitor p57/KIP2 (CDKN1C) gene, complete sequence Length = 137932 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 156 cgtggccatggtgctggtgcagctc 180 ||||||||||||||||| ||||||| Sbjct: 115272 cgtggccatggtgctggagcagctc 115296
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 161 ccatggtgctggtgcagctcttctactcg 189 |||||||| |||||||||||||| ||||| Sbjct: 6546439 ccatggtgttggtgcagctcttcaactcg 6546467
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 cctcctcttcctcgcctccctcgcc 375 |||||||||||||||| |||||||| Sbjct: 704236 cctcctcttcctcgccaccctcgcc 704212
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 460 ggcatcaccttcgccatcgccgccg 484 |||||||||||||| |||||||||| Sbjct: 1419247 ggcatcaccttcgcgatcgccgccg 1419223 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 atcaccttcgccatcgccgc 482 |||||||||||||||||||| Sbjct: 3320581 atcaccttcgccatcgccgc 3320562
>dbj|AK070341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050L03, full insert sequence Length = 3713 Score = 42.1 bits (21), Expect = 1.8 Identities = 33/37 (89%) Strand = Plus / Plus Query: 226 ggcatgcgccccatcgtcttcgtcgcctaccgccagg 262 |||||| || |||| |||||||||| ||||||||||| Sbjct: 2470 ggcatgagcgccatggtcttcgtcgtctaccgccagg 2506
>gb|AY704201.1| Chlamydomonas reinhardtii strain 169.84 vector insertion site adjacent to insertional marker genomic sequence Length = 206 Score = 42.1 bits (21), Expect = 1.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 227 gcatgcgccccatcgtcttcgtcgcctaccgcc 259 ||||||||||||||||| |||||||| ||||| Sbjct: 11 gcatgcgccccatcgtcaccgtcgcctgccgcc 43
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 161 ccatggtgctggtgcagctcttctactcg 189 |||||||| |||||||||||||| ||||| Sbjct: 6548825 ccatggtgttggtgcagctcttcaactcg 6548853
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 cctcctcttcctcgcctccctcgcc 375 |||||||||||||||| |||||||| Sbjct: 374915 cctcctcttcctcgccaccctcgcc 374891 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 348 cgccctcctcttcctcgcctccctc 372 ||||||||||||||||||| ||||| Sbjct: 125371 cgccctcctcttcctcgcccccctc 125347
>gb|DQ176871.1| Streptomyces aureofaciens strain Tu117 lipomycin biosynthesis gene cluster, complete sequence Length = 66871 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 cttcctcgcctccctcgcca 376 |||||||||||||||||||| Sbjct: 1531 cttcctcgcctccctcgcca 1512
>ref|XM_638890.1| Dictyostelium discoideum hypothetical protein (DDB0217499), partial mRNA Length = 2760 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tcctcttcctcgcctccctc 372 |||||||||||||||||||| Sbjct: 602 tcctcttcctcgcctccctc 583
>gb|AC159421.1| Trypanosoma brucei chromosome 7 clone RPCI93-26A24, complete sequence Length = 158050 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 atcaccttcgccatcgccgc 482 |||||||||||||||||||| Sbjct: 21492 atcaccttcgccatcgccgc 21473
>gb|BT018634.1| Zea mays clone EL01N0504B05.d mRNA sequence Length = 1580 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tcgccctcctcttcctcgcc 366 |||||||||||||||||||| Sbjct: 1282 tcgccctcctcttcctcgcc 1263
>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region and partial cds Length = 3196 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gccccatcgtcttcgtcgcc 252 |||||||||||||||||||| Sbjct: 2946 gccccatcgtcttcgtcgcc 2965
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 atcaccttcgccatcgccgc 482 |||||||||||||||||||| Sbjct: 1288631 atcaccttcgccatcgccgc 1288650
>ref|XM_359923.1| Magnaporthe grisea 70-15 hypothetical protein (MG04854.4) partial mRNA Length = 1206 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tggcgctcaagacggcctac 219 |||||||||||||||||||| Sbjct: 239 tggcgctcaagacggcctac 258
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 ctcgcgtcgccgtccatggc 434 |||||||||||||||||||| Sbjct: 2097761 ctcgcgtcgccgtccatggc 2097742
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 cctcctcttcctcgcctccc 370 |||||||||||||||||||| Sbjct: 201327 cctcctcttcctcgcctccc 201308
>ref|XM_818890.1| Trypanosoma brucei TREU927 clone RPCI93-26A24 5'-3' exonuclease XRNA (Tb927.7.4900) partial mRNA Length = 4257 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 atcaccttcgccatcgccgc 482 |||||||||||||||||||| Sbjct: 4116 atcaccttcgccatcgccgc 4097
>gb|AC148397.13| Medicago truncatula clone mth2-22h4, complete sequence Length = 131213 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cagctcttctactcgctggt 194 |||||||||||||||||||| Sbjct: 61447 cagctcttctactcgctggt 61466
>emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete genome; segment 16/16 Length = 123385 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tcgccatcgccgccgtcatc 489 |||||||||||||||||||| Sbjct: 16763 tcgccatcgccgccgtcatc 16782
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tcgccatcgccgccgtcatc 489 |||||||||||||||||||| Sbjct: 152591 tcgccatcgccgccgtcatc 152610
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 tcgccatcgccgccgtcatc 489 |||||||||||||||||||| Sbjct: 131046 tcgccatcgccgccgtcatc 131027
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 435 ccgggccaccaccaacctcgcccccggc 462 ||||||||||| | |||||||||||||| Sbjct: 108539 ccgggccaccatccacctcgcccccggc 108566
>gb|AC007688.15| Homo sapiens 12 BAC RPCI11-392P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161577 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 345 cttcgccctcctcttcctcgcctccctc 372 |||||||||||||||||| |||||||| Sbjct: 106875 cttcgccctcctcttcctttcctccctc 106848
>gb|AC023683.4| Drosophila melanogaster X BAC RP98-29G2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160194 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 gcgtggccatggtgctggtg 174 |||||||||||||||||||| Sbjct: 155291 gcgtggccatggtgctggtg 155310
>gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169124 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gcgtggccatggtgctggtg 174 |||||||||||||||||||| Sbjct: 157165 gcgtggccatggtgctggtg 157146
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 349 gccctcctcttcctcgcctccctc 372 ||||||||||||||| |||||||| Sbjct: 2920641 gccctcctcttcctctcctccctc 2920664
>ref|NM_132391.1| Drosophila melanogaster CG15307-RA (CG15307), mRNA Length = 612 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gcgtggccatggtgctggtg 174 |||||||||||||||||||| Sbjct: 487 gcgtggccatggtgctggtg 468
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 ccatggcccgggccaccacc 447 |||||||||||||||||||| Sbjct: 550048 ccatggcccgggccaccacc 550029
>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence Length = 333321 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tcctcttcctcgcctccctc 372 |||||||||||||||||||| Sbjct: 60835 tcctcttcctcgcctccctc 60816
>ref|XM_219944.3| PREDICTED: Rattus norvegicus F-box and WD-40 domain protein 4 (predicted) (Fbxw4_predicted), mRNA Length = 2376 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tcttcctcgcctccctcgcc 375 |||||||||||||||||||| Sbjct: 470 tcttcctcgcctccctcgcc 451
>gb|AC037459.16| Homo sapiens chromosome 8, clone RP11-582J16, complete sequence Length = 174888 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tcgccctcctcttcctcgcc 366 |||||||||||||||||||| Sbjct: 120062 tcgccctcctcttcctcgcc 120081
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 tggccatggtgctggtgcag 177 |||||||||||||||||||| Sbjct: 674771 tggccatggtgctggtgcag 674752
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 cccccggcatcaccttcgcc 474 |||||||||||||||||||| Sbjct: 2603772 cccccggcatcaccttcgcc 2603791
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 caccttcgccatcgccgccg 484 |||||||||||||||||||| Sbjct: 149468 caccttcgccatcgccgccg 149449
>gb|AE004999.1| Halobacterium sp. NRC-1 section 30 of 170 of the complete genome Length = 16155 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 473 ccatcgccgccgtcatcggg 492 |||||||||||||||||||| Sbjct: 14106 ccatcgccgccgtcatcggg 14125
>dbj|AK024522.1| Homo sapiens cDNA: FLJ20869 fis, clone ADKA02377 Length = 2037 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 345 cttcgccctcctcttcctcgcctccctc 372 |||||||||||||||||| |||||||| Sbjct: 775 cttcgccctcctcttcctttcctccctc 802
>ref|XM_319733.2| Anopheles gambiae str. PEST ENSANGP00000019379 (ENSANGG00000016890), partial mRNA Length = 4785 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 cttcgccctcctcttcctcg 364 |||||||||||||||||||| Sbjct: 2017 cttcgccctcctcttcctcg 1998
>gb|AE003450.4| Drosophila melanogaster chromosome X, section 34 of 74 of the complete sequence Length = 232514 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gcgtggccatggtgctggtg 174 |||||||||||||||||||| Sbjct: 82026 gcgtggccatggtgctggtg 82007
>dbj|AB091769.1| Rattus norvegicus DMN mRNA for desmuslin, complete cds Length = 6447 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ccttcgccctcctcttcctc 363 |||||||||||||||||||| Sbjct: 2501 ccttcgccctcctcttcctc 2482
>gb|AC005331.2| Homo sapiens chromosome 19, cosmid R31341, complete sequence Length = 35581 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 353 tcctcttcctcgcctccctcgcca 376 ||||||||||||||||||| |||| Sbjct: 27613 tcctcttcctcgcctcccttgcca 27590
>dbj|BA000024.1| Beta vulgaris subsp. vulgaris mitochondrial genomic DNA, complete sequence Length = 501020 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 ggccaccaccaacctcgcccccgg 461 |||||||||| ||||||||||||| Sbjct: 290777 ggccaccacccacctcgcccccgg 290754 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 ggccaccaccaacctcgcccccgg 461 |||||||||| ||||||||||||| Sbjct: 98261 ggccaccacccacctcgcccccgg 98238 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,944,616 Number of Sequences: 3902068 Number of extensions: 2944616 Number of successful extensions: 79580 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78255 Number of HSP's gapped (non-prelim): 1325 length of query: 537 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 514 effective length of database: 17,143,297,704 effective search space: 8811655019856 effective search space used: 8811655019856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
